# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Dictyostelium_discoideum.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-66 222.3 0.0 4.1e-66 222.0 0.0 1.1 1 sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine
7.2e-54 182.1 0.0 1.3e-53 181.2 0.0 1.5 1 sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Di
6.7e-49 165.9 0.0 1.3e-48 164.9 0.0 1.5 1 sp|Q86AH1|MRM2_DICDI rRNA methyltransferase 2, mitochondri
5.2e-31 107.6 0.0 8e-31 107.0 0.0 1.3 1 sp|Q54WR1|MTR1_DICDI Cap-specific mRNA (nucleoside-2'-O-)-
2.2e-07 30.7 0.0 5.1e-07 29.5 0.0 1.7 1 tr|Q54X18|Q54X18_DICDI Uncharacterized protein OS=Dictyostel
6.9e-06 25.8 0.0 0.0003 20.5 0.0 2.5 1 tr|Q55DF6|Q55DF6_DICDI Uncharacterized protein OS=Dictyostel
1.2e-05 25.1 0.0 2.7e-05 23.9 0.0 1.6 1 tr|Q54HM4|Q54HM4_DICDI Uncharacterized protein OS=Dictyostel
1.2e-05 25.0 0.0 2.3e-05 24.1 0.0 1.4 1 tr|Q54FX0|Q54FX0_DICDI Uncharacterized protein OS=Dictyostel
0.00015 21.5 0.0 0.00032 20.4 0.0 1.5 1 sp|Q54EF2|ANM1_DICDI Protein arginine N-methyltransferase
0.00052 19.7 0.1 0.00097 18.8 0.1 1.5 1 tr|Q54TL4|Q54TL4_DICDI Uncharacterized protein OS=Dictyostel
0.00054 19.6 0.0 0.005 16.5 0.0 2.2 2 sp|Q54HI0|ANM2_DICDI Protein arginine N-methyltransferase
0.00078 19.1 0.0 0.001 18.7 0.0 1.2 1 sp|Q55CW0|FBRL_DICDI rRNA 2'-O-methyltransferase fibrillar
------ inclusion threshold ------
0.014 15.0 0.0 0.028 14.0 0.0 1.4 1 tr|Q55G09|Q55G09_DICDI Uncharacterized protein OS=Dictyostel
0.016 14.8 0.0 0.042 13.5 0.0 1.4 1 tr|Q54BE3|Q54BE3_DICDI Uncharacterized protein OS=Dictyostel
0.025 14.2 0.0 0.064 12.9 0.0 2.0 1 tr|Q55GC0|Q55GC0_DICDI Uncharacterized protein OS=Dictyostel
0.029 14.0 0.1 0.08 12.6 0.0 1.8 2 tr|C7G023|C7G023_DICDI NOL1/NOP2/Sun family protein OS=Dicty
0.049 13.2 0.0 0.1 12.2 0.0 1.6 1 tr|Q54M56|Q54M56_DICDI rRNA adenine N(6)-methyltransferase O
0.06 13.0 0.1 0.13 11.9 0.1 1.7 1 tr|Q54LU3|Q54LU3_DICDI Uncharacterized protein OS=Dictyostel
0.07 12.7 0.0 0.22 11.1 0.0 1.9 1 tr|Q54EP8|Q54EP8_DICDI Uncharacterized protein OS=Dictyostel
0.079 12.6 0.0 0.19 11.3 0.0 1.6 1 tr|Q54C42|Q54C42_DICDI Uncharacterized protein OS=Dictyostel
0.09 12.4 0.0 0.14 11.8 0.0 1.2 1 tr|Q869L6|Q869L6_DICDI Uncharacterized protein OS=Dictyostel
Domain annotation for each sequence (and alignments):
>> sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyostelium discoideum O
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 222.0 0.0 6.8e-69 4.1e-66 1 177 [] 21 202 .. 21 202 .. 0.97
Alignments for each domain:
== domain 1 score: 222.0 bits; conditional E-value: 6.8e-69
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT........-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl...ga..kgkvvavDlqpmaplpgvttiqgditdpetiekikeals 84
+r+Rsa+KL++ide++++f+ +k+vvDl+aaPG+wsqvl++r+ g+ + k+vavDlq+mapl+gv +i+gdit+ et ++i +++
sp|Q54VA8|TRM7_DICDI 21 WRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLSRRIygdGKdpDVKIVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFD 109
79*****************************************655223459************************************* PP
HSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEE CS
FtsJ 85 erkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflv 173
++ +dl++sDgapdv+g hd+d y qsqL+l+al++++++lk ggtfv+k+f+g++ + +++q+k fFe+vs vkP+ssr++s e f++
sp|Q54VA8|TRM7_DICDI 110 GSLADLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSRESSLENFIL 198
***************************************************************************************** PP
EEEE CS
FtsJ 174 crgf 177
cr++
sp|Q54VA8|TRM7_DICDI 199 CRNY 202
**96 PP
>> sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum OX=44689 GN=fsjC PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 181.2 0.0 2.1e-56 1.3e-53 1 177 [] 25 201 .. 25 201 .. 0.99
Alignments for each domain:
== domain 1 score: 181.2 bits; conditional E-value: 2.1e-56
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEE CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvd 89
yrsR+a+KL+++++k++++ k+++Dl+aaPGgw+qv+++ + ++ +v+vDl p++++ ++ ++ dit+++ + +ik+al+ kvd
sp|Q54NX0|SPB1_DICDI 25 YRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASKYMPVQSLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVD 113
9****************999***********************999******************************************* PP
EEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 90 lvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+ ++Dgap++ +++d+y+q++L l al+la++ l +gg fv+k+frg++ ++l+ ++k+F+kv+ +kP+ssr++s+e+f+vc+gf
sp|Q54NX0|SPB1_DICDI 114 VCLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNKLFKKVESTKPPSSRNASAEIFVVCQGF 201
**************************************************************************************98 PP
>> sp|Q86AH1|MRM2_DICDI rRNA methyltransferase 2, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=fsjB PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 164.9 0.0 2.2e-51 1.3e-48 2 177 .] 409 637 .. 408 637 .. 0.97
Alignments for each domain:
== domain 1 score: 164.9 bits; conditional E-value: 2.2e-51
TSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH..... CS
FtsJ 2 rsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse..... 85
sR+ayK+++ide+ +lfkpg+ vvDlgaaPGgws+++ +r++++g v++vD+ ++ +l++ +i+gd+t et++ki e+++
sp|Q86AH1|MRM2_DICDI 409 ISRAAYKIINIDEQIQLFKPGQIVVDLGAAPGGWSKYIQERVTNRGLVISVDTSSNFQLDKDCFIHGDFTLTETQNKIFELTKFkslnd 497
69****************************************999*********************************98665588999 PP
................................................SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEE CS
FtsJ 86 ................................................rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllk 126
+vd+vvsD+ap+ sg +++d+ + ++L + al +a+k+lk
sp|Q86AH1|MRM2_DICDI 498 lklykhslihsdskiqnlienggangngsgngdlqkqpidnmfkqksaCYVDVVVSDMAPSYSGLQQVDHSRLIDLQRLALFFAFKTLK 586
********************************************999888*************************************** PP
EEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 127 pggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+ggtfv+k+ rg e ++++k l++ F +v+ +kP +srses e++++ +++
sp|Q86AH1|MRM2_DICDI 587 KGGTFVCKVSRGGEEKKFFKLLESNFISVKSMKPGASRSESTEIYYIGKNY 637
***********************************************9986 PP
>> sp|Q54WR1|MTR1_DICDI Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Dictyostelium discoideum OX=44689 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 107.0 0.0 1.3e-33 8e-31 1 177 [] 215 437 .. 215 437 .. 0.84
Alignments for each domain:
== domain 1 score: 107.0 bits; conditional E-value: 1.3e-33
TTSHHHHHHHHHHHHH--S-TT-E..........EEEES-TT-HHHHHHTTT...........-.......SEEEEEES.S--...... CS
FtsJ 1 yrsRsayKLleidekfklfkpgkt..........vvDlgaaPGgwsqvllqrl........gak.......gkvvavDl.qpm...... 57
+ +R+a+K+++id+ +l++p + D++a+PGg+++++ ++ + + k +++++ +++
sp|Q54WR1|MTR1_DICDI 215 FINRAAVKMANIDKLADLLTPIIPvpgkprdfiyFGDVCAGPGGFTEYVYWKKtrggkikgE-EgldlddvVKGFGFTIkGQCdwnvek 302
579**************99977444445577777******************8666555541.13444455889999996666999988 PP
..---TT-EEE.......E--TTSSSHHHHHH....HHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE CS
FtsJ 58 ..aplpgvtti.......qgditdpetiekik....ealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvl 133
+++p +++ +g+i++ e+i+ ++ +++ + +l ++Dg+ ++ g+++l+e++ qL+l+++ ++++++++gg+fv+
sp|Q54WR1|MTR1_DICDI 303 fsKQIPIHNFVkeyglddTGNILKSENIRDFSskvfYNTNGFGLQLFLADGGINTDGKESLQELMLQQLILCQILTMFETIGRGGNFVC 391
7766677777788899******999999966633223345589********************************************** PP
EEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 134 kifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
kif+ ++ ++ +ll+ + ++F+++s+vkP +sr+ +se++++c++f
sp|Q54WR1|MTR1_DICDI 392 KIFDtFTPFTiGLLYLVYQHFQSFSIVKPFTSRPLNSERYIICKNF 437
****9899999*********************************98 PP
>> tr|Q54X18|Q54X18_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0205684 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.5 0.0 8.4e-10 5.1e-07 3 116 .. 467 583 .. 465 622 .. 0.72
Alignments for each domain:
== domain 1 score: 29.5 bits; conditional E-value: 8.4e-10
SHHHHHHHHHHHHH-.......-S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.....---..TT-EEEE--TTSSSH CS
FtsJ 3 sRsayKLleidekfk.......lfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....apl..pgvttiqgditdpet 75
sRs +KL e+ +kf +kp++tv+Dlg++PGgw+ + l + g ++v ++D p ++ ++++++++ ++ +
tr|Q54X18|Q54X18_DICDI 467 SRSFLKLFELFQKFPpnltpfpSMKPNETVIDLGSSPGGWTLFSLLQ-G--CHVTSIDKSPLnskclDLNdsRNLKFLEMNAFEFNP 550
8*************876664444568899************998877.4..89******9997755422244678888888877776 PP
HHHHHHHHHHSSEEEEEE---.----S-HHHHHHHHHHHHHH CS
FtsJ 76 iekikealserkvdlvvsDga.pdvsgvhdldeylqsqLlla 116
+ +d + D+ p ++ ld+ l+++L+++
tr|Q54X18|Q54X18_DICDI 551 ES---------SFDWLIIDMKvPPMKSLILLDQWLNLKLCRN 583
66.........3556666665455555556666666655554 PP
>> tr|Q55DF6|Q55DF6_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0190459 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.5 0.0 4.9e-07 0.0003 20 150 .. 163 468 .. 150 483 .. 0.73
Alignments for each domain:
== domain 1 score: 20.5 bits; conditional E-value: 4.9e-07
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---TT-EEE.....E--TTSSSHHHHHHHHHHH..... CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........aplpgvtti.....qgditdpetiekikealse..... 85
kpg++v+D+++aPG +++ l+ +g + +vD+ + ++p+ +++ + + + p+ e+i
tr|Q55DF6|Q55DF6_DICDI 163 KPGDNVLDICCAPGTKLCMISDLLEGNGTITGVDISESrlgtcktilkkYKIPNARLFicdgtKFNSLAPNSSETIP----Mekvqa 245
5899********************888********999899998877653446666663343333333333333322....022334 PP
....................................................................................... CS
FtsJ 86 ....................................................................................... 85
tr|Q55DF6|Q55DF6_DICDI 246 kkklklnnnnnittttttttttsinnfkekedekedekedekedekedekdnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 332
556666777888888888888888888999999****************************************************** PP
......................................................SSEEEEEE----..................... CS
FtsJ 86 ......................................................rkvdlvvsDgap..................... 97
tr|Q55DF6|Q55DF6_DICDI 333 nnnnnnnnnnnnnsivsdlvekkrkskraskkktfdledlyfcntffmrysvggG----------Lydkvivdaecsldasirhllk 409
********96666666666666666666655555555555555555555555444..........0555555554577777777777 PP
..---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHH.HGG CS
FtsJ 98 ..dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr..geeteallkq.lkk 150
++s + dl++ +q+ +L + +e ++kllkpgg++v ++ +++ e++++ l+k
tr|Q55DF6|Q55DF6_DICDI 410 ysKISRNLDLEKSKQLiNLQKGLIENGFKLLKPGGHLVYSTCSfsKDQNESVVQYlLNK 468
777777777777777559999999**************888775355555777664444 PP
>> tr|Q54HM4|Q54HM4_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0188379 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.9 0.0 4.4e-08 2.7e-05 3 97 .. 436 559 .. 435 585 .. 0.75
Alignments for each domain:
== domain 1 score: 23.9 bits; conditional E-value: 4.4e-08
SHHHHHHHHHHHHH--S-.TT-EEEEES-TT-HHHHHHTTT.........................-....SEEEEEESS--....- CS
FtsJ 3 sRsayKLleidekfklfk.pgktvvDlgaaPGgwsqvllqrl......................gak....gkvvavDlqpm....a 58
sR+ KL+e + ++ pg t+v+lg++PGgw+ +l++ + + a+D + +
tr|Q54HM4|Q54HM4_DICDI 436 SRAYKKLIESFQLMGKTPtPGSTIVELGSSPGGWTSILNRLYeydedhysnnndnnknnnngdnI-EsippFEIHAIDRSKLdagfN 521
89**********9995546*******************555555666655555555544443330.134448999999998865444 PP
--TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE---- CS
FtsJ 59 plpgvttiqgditdpetiekikealserkvdlvvsDgap 97
+++ ++q + t+ + + + l+ ++v v+ D++
tr|Q54HM4|Q54HM4_DICDI 522 DCNNIFQYQENGTKWLPTNHLDD-LESNPVGWVLNDMSI 559
44888888999999999999997.556799999999994 PP
>> tr|Q54FX0|Q54FX0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0188951 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.0 3.8e-08 2.3e-05 20 142 .. 270 435 .. 255 462 .. 0.67
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 3.8e-08
-TT-EEEEES-TT-HHHHHH...........TTT............-SEEEEEESS--.........---...TT-EEEE--T...T CS
FtsJ 20 kpgktvvDlgaaPGgwsqvl...........lqrl.....ga....kgkvvavDlqpm.........apl...pgvttiqgdi...t 71
k g++++D +aaPGg + + + ++ k+ ++a+D +++ + l + vt++ d t
tr|Q54FX0|Q54FX0_DICDI 270 KLGDKIIDMCAAPGGKTTLIasliqqfeinnN--QnnqkyQNnneiKTEIFALDKNKGkvkkiidlcKRLsldKYVTCLAKDSsklT 354
36889***************555555555541..0434431134456********99988888877733345689****77763313 PP
SSSHHH...HHHHHHHHSSEEEEEE-------S-HHHHHHHH..........HHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH CS
FtsJ 72 dpetie...kikealserkvdlvvsDgapdvsgvhdldeylq..........sqLllaalelalkllkpggtfvlkifr.geete 142
++++++ ki ++ + +d v+ Dg +sg + + +++ s+ ++ + a++llkpgg++v ++ ++e +
tr|Q54FX0|Q54FX0_DICDI 355 KENQQDpldKI--RFQSNSFDKVLLDGP--CSGLGSRPRLIEssslvdltnsSEFQKKLIDQAVSLLKPGGILVYSTCSiNPEEN 435
33333332222..356699********7..666555555555444444444478888888888889********88887644444 PP
>> sp|Q54EF2|ANM1_DICDI Protein arginine N-methyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=prmt1 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.4 0.0 5.3e-07 0.00032 15 93 .. 53 131 .. 45 153 .. 0.76
Alignments for each domain:
== domain 1 score: 20.4 bits; conditional E-value: 5.3e-07
HH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.....SSEEEEEE CS
FtsJ 15 kfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.....rkvdlvvs 93
klf +gk v+D+g+++G + +++q ga ++v++vD +m p+ + + ++ + ti +ik ++e kvd+++s
sp|Q54EF2|ANM1_DICDI 53 NRKLF-EGKVVLDVGCGTGILCMFAAQA-GA-KMVIGVDNSEMLPIAQKIITANNFDK--TITLIKGKMEEvvlpvDKVDIIIS 131
45666.8999******************.88.9**********999666665555533..444555555555555666777766 PP
>> tr|Q54TL4|Q54TL4_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0204605 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.8 0.1 1.6e-06 0.00097 21 94 .. 358 434 .. 339 514 .. 0.73
Alignments for each domain:
== domain 1 score: 18.8 bits; conditional E-value: 1.6e-06
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.......SSEEEEEE- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.......rkvdlvvsD 94
p+++v+D +a+PGg + +++ ++++g +va D+++ +++++ ++i + +++ + l++ +++d v+ D
tr|Q54TL4|Q54TL4_DICDI 358 PNERVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKD----RIKSLVANIHRLGVKNCMVSNLDGrqypsvlSGFDRVLVD 434
7889*******************999********995....5666666666555555554444444444444445555555 PP
>> sp|Q54HI0|ANM2_DICDI Protein arginine N-methyltransferase 2 OS=Dictyostelium discoideum OX=44689 GN=prmt2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.0 8.2e-06 0.005 12 66 .. 150 201 .. 140 260 .. 0.78
2 ? 0.3 0.0 0.76 4.6e+02 18 43 .. 428 457 .. 411 486 .. 0.73
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 8.2e-06
HHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE CS
FtsJ 12 idekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti 66
i + ++f ++k v+D+g+++G s ++++ ga +kv+avD ma + + +
sp|Q54HI0|ANM2_DICDI 150 ISKSKNIF-KDKVVLDVGCGTGILSCFVAKA-GA-KKVYAVDASDMAHRAELIVQ 201
45555666.7889***************999.88.9**********877554444 PP
== domain 2 score: 0.3 bits; conditional E-value: 0.76
-S-TT-EEEEES-TT-H....HHHHHTTT. CS
FtsJ 18 lfkpgktvvDlgaaPGg....wsqvllqrl 43
+fk+ +v++l aPG w qvl +
sp|Q54HI0|ANM2_DICDI 428 FFKQSSNVLELSTAPGTgdqhWKQVLFLNS 457
4688999*********54444888886664 PP
>> sp|Q55CW0|FBRL_DICDI rRNA 2'-O-methyltransferase fibrillarin OS=Dictyostelium discoideum OX=44689 GN=fbl PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.7 0.0 1.7e-06 0.001 1 98 [. 152 252 .. 152 310 .. 0.87
Alignments for each domain:
== domain 1 score: 18.7 bits; conditional E-value: 1.7e-06
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekik 80
+rs+ a L ++ + +kpg +v+ +gaa G + ++ +g++g+v+++ l + +++ +v i d ++p++ +++
sp|Q55CW0|FBRL_DICDI 152 FRSKIAAGLHRGVDEIH-IKPGSKVLYIGAASGTTISHVSDIVGPTGVVYGIELSHRpgrdligmaKKRTNVIPIIEDARHPQKYRMLI 239
67888888999999999.99**********************************888889888876666899999***********999 PP
HHHHHSSEEEEEE----- CS
FtsJ 81 ealserkvdlvvsDgapd 98
vd+v +D+a
sp|Q55CW0|FBRL_DICDI 240 G-----MVDVVFADVAQP 252
6.....59*******953 PP
>> tr|Q55G09|Q55G09_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0189607 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.0 0.0 4.7e-05 0.028 21 102 .. 256 343 .. 232 360 .. 0.75
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 4.7e-05
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---.TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE-- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........apl.pgvttiqgditdpetiekikealserkvdlvvsDg 95
pg ++D ++aPG+ + l+ +++++gk++a+ + l ++++ti+ +++ + + + + + v+ +++D
tr|Q55G09|Q55G09_DICDI 256 PGSVCIDSCSAPGNKTSLLSAQMKNTGKIFAIEKDTKrcgtlikltkrS-LcKNIETINDSFLNLKHDD---PKF--KDVEYILCDP 336
7889*******************999******88666568777665433.2477777777776655554...223..3599*****9 PP
-----S- CS
FtsJ 96 apdvsgv 102
+ + sg+
tr|Q55G09|Q55G09_DICDI 337 SCSGSGI 343
8655554 PP
>> tr|Q54BE3|Q54BE3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0192083 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.5 0.0 6.9e-05 0.042 18 79 .. 37 94 .. 18 123 .. 0.70
Alignments for each domain:
== domain 1 score: 13.5 bits; conditional E-value: 6.9e-05
-S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHH CS
FtsJ 18 lfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetieki 79
++ ++++v+Dlg++ G ++ + ++ g ++++vD+ + +++++ ++ d ++ ++ ++
tr|Q54BE3|Q54BE3_DICDI 37 II-KNGNVIDLGCGNGWFCREMIEK-GV-NQIIGVDISE-KLIKKAIELNKDNNNNNNNNNN 94
44.5669******************.88.99******99.4554444444444333333333 PP
>> tr|Q55GC0|Q55GC0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0189501 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.0 0.00011 0.064 13 43 .. 40 69 .. 33 224 .. 0.89
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 0.00011
HHHH--S-TT-EEEEES-TT-HHHHHHTTT. CS
FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrl 43
+++fk ++ + +v+Dl+a++G +++ l++
tr|Q55GC0|Q55GC0_DICDI 40 KAEFK-LNDNSKVLDLAAGTGKFTELLAKSK 69
56788.789999***************9874 PP
>> tr|C7G023|C7G023_DICDI NOL1/NOP2/Sun family protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0295715 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 0.00013 0.08 21 139 .. 211 387 .. 170 413 .. 0.62
2 ? -3.2 0.1 9.2 5.6e+03 32 78 .. 479 526 .. 478 563 .. 0.64
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.00013
TT-EEEEES-TT-HHHHHHTTT.................-SEEEEEESS--..---...TT-EEEE--TTSSSHHHHHHHHHHH... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrl..............gakgkvvavDlqpm..apl...pgvttiqgditdpetiekikealse... 85
+++D +aaPG+ + +l+ l kv + D ++ +p p+ +i d+ + + ++ +++ +
tr|C7G023|C7G023_DICDI 211 SHYNILDMCAAPGSKTTQILEDLhmkhnleneeiikrS--LKVDGGDSGSSneKPSiyiPKGCIIANDVDTNRCYMLVTQTT-Rlgs 294
3367***************9999777777665555430..555555555443322223355555555555555555555433.2356 PP
...........................SSEEEEEE-------S-.HHHHHHHH.......HHHHHHHHHH...HHHHEEEEEEEEEE CS
FtsJ 86 ...........................rkvdlvvsDgapdvsgv.hdldeylq.......sqLllaalel...alkllkpggtfvlk 134
++d +++D+ + g+ ++ +e+ + + L + ++++ +++llk gg +v
tr|C7G023|C7G023_DICDI 295 paiivtnheaqnfpllysknsdgsespIYMDRILCDVPCSGDGTtRKNPEVWKkwthagsIGLHQLQIKIatrGCQLLKVGGRMVYS 381
66666666666666666667888887788999****975555543455555557777776444444444422267899999999987 PP
EE-.ST CS
FtsJ 135 ifr.ge 139
++ ++
tr|C7G023|C7G023_DICDI 382 TCSmNP 387
777433 PP
== domain 2 score: -3.2 bits; conditional E-value: 9.2
T-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHH CS
FtsJ 32 PGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiek 78
+Gg+ +l+++ ++ ++ ++p +++ + t+i++ t+ +t ++
tr|C7G023|C7G023_DICDI 479 TGGFFIAVLEKVSDCPNQIGKKTGPLNQIdNDQTIITTTATTTTTDNT 526
577777777777656777888888887773334444444444444443 PP
>> tr|Q54M56|Q54M56_DICDI rRNA adenine N(6)-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=DDB0186850 PE=3 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 0.00017 0.1 23 82 .. 55 122 .. 14 208 .. 0.75
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00017
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---..TT-EEEE--TTSSSHHHHHHHH CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........apl..pgvttiqgditdpetiekikea 82
tv+++ga+PGg + ll+ ga +kv+av + p + ++++i ++ +d + ++++++a
tr|Q54M56|Q54M56_DICDI 55 CTVIEVGAGPGGLTRSLLTS-GA-KKVIAVEMDPRfypalkmleE-SsgGRMSLIMANMMDVDEAKLLRDA 122
45******************.88.9*****999887665533321.1234777777777777777766654 PP
>> tr|Q54LU3|Q54LU3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0186961 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.1 0.00021 0.13 19 97 .. 75 171 .. 21 240 .. 0.77
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 0.00021
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--........---TT-EEEE--TTSSSHHHHHHHHHHH.........SS CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm........aplpgvttiqgditdpetiekikealse.........rk 87
++pg++v+D+g++ G l ++ +g vv++D+ ++m + lp+v+++ gd + ++ +a
tr|Q54LU3|Q54LU3_DICDI 75 LQPGQKVMDCGCGAGKDLGRLESMVEGNGIVVGMDIsREMvecaksrmSHLPNVKIFIGDASRIPIDDNYFDAYVIrcerllqhvIN 161
578999*********9999999999878********8889*9998655555*********977776664433222223333333434 PP
EEEEEE---- CS
FtsJ 88 vdlvvsDgap 97
dlv+s +
tr|Q54LU3|Q54LU3_DICDI 162 PDLVISEMTR 171
5666665554 PP
>> tr|Q54EP8|Q54EP8_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0183875 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.1 0.0 0.00036 0.22 12 93 .. 41 140 .. 38 251 .. 0.75
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 0.00036
HHHHH--S-.TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--.............---..TT-EEEE--T.TSSSHHHHHH CS
FtsJ 12 idekfklfk.pgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.............apl..pgvttiqgdi.tdpetiekik 80
i ++f+ + k +++++++PG+ ++ +lq + ++k ++ D+ ++m + + ++ ++ q++ + p + +
tr|Q54EP8|Q54EP8_DICDI 41 ITSQFGSAQnSCKSILEVACGPGAGTKLCLQYKNDSSKFISTDIsNEMiqltkqclgmtngDEIpeKNFKIQQCNAeKLPFPDNSFD 127
55667755447789******************9889********8888777665555555422222444444666633344444555 PP
HHHHHSSEEEEEE CS
FtsJ 81 ealserkvdlvvs 93
+++s+++ +lv+s
tr|Q54EP8|Q54EP8_DICDI 128 RYFSNYCLHLVTS 140
6666666666655 PP
>> tr|Q54C42|Q54C42_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0191845 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00032 0.19 20 64 .. 426 467 .. 402 484 .. 0.83
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00032
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-E CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvt 64
++++t +D+++++G q++++++ +kv+++ + p a ++ ++
tr|Q54C42|Q54C42_DICDI 426 SQDTTLLDICCGTGTIGQCISKKV---KKVIGLEISPDAVIDSIN 467
467899*****************8...58*****99987665554 PP
>> tr|Q869L6|Q869L6_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0167345 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.8 0.0 0.00023 0.14 42 100 .. 32 98 .. 18 123 .. 0.75
Alignments for each domain:
== domain 1 score: 11.8 bits; conditional E-value: 0.00023
T...-SEEEEEESS--........---TT-EEEE--TTSSSHHH.HHHHHHHH.SSEEEEEE------- CS
FtsJ 42 rlgakgkvvavDlqpm........aplpgvttiqgditdpetie.kikealse.rkvdlvvsDgapdvs 100
+ +++kvva++ +p ++l++v +i++d+t++e + ik+++++ ++d+vv ++ +
tr|Q869L6|Q869L6_DICDI 32 K--PNTKVVAITRNPAetksridpELLENVFIIKADVTNEESVKeSIKQTMEKfGRIDCVVNNAGFGIA 98
2..259**********998887544559*********88877662555555446678888877666555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 12739 (6856946 residues searched)
Passed MSV filter: 385 (0.0302222); expected 254.8 (0.02)
Passed bias filter: 271 (0.0212733); expected 254.8 (0.02)
Passed Vit filter: 47 (0.00368946); expected 12.7 (0.001)
Passed Fwd filter: 21 (0.00164848); expected 0.1 (1e-05)
Initial search space (Z): 12739 [actual number of targets]
Domain search space (domZ): 21 [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.06
# Mc/sec: 20227.99
//
[ok]