# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/FtsJ.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FtsJ [M=177] Accession: PF01728.18 Description: FtsJ-like methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-69 231.4 0.0 1e-68 231.2 0.0 1.1 1 tr|F6Q075|F6Q075_MONDO Putative tRNA (cytidine(32)/guanosine 4.6e-56 190.0 0.1 8.4e-56 189.1 0.1 1.5 1 tr|F6UUX8|F6UUX8_MONDO pre-rRNA processing protein FTSJ3 OS= 8.7e-35 120.6 0.0 1.8e-34 119.6 0.0 1.6 1 tr|F7DTG4|F7DTG4_MONDO E3 ubiquitin-protein ligase RNF8 OS=M 7.1e-29 101.4 0.0 8.5e-27 94.6 0.0 2.3 2 tr|F6XIP7|F6XIP7_MONDO Cap methyltransferase 2 OS=Monodelphi 5e-07 30.2 0.0 1.2e-06 29.0 0.0 1.5 1 tr|F7FNT7|F7FNT7_MONDO NOP2/Sun RNA methyltransferase family 0.00041 20.8 0.0 0.00089 19.6 0.0 1.5 1 tr|F6U5C4|F6U5C4_MONDO Uncharacterized protein OS=Monodelphi 0.00094 19.6 0.0 0.0016 18.8 0.0 1.4 1 tr|F6WS57|F6WS57_MONDO NOP2/Sun RNA methyltransferase family 0.0043 17.4 0.0 0.0073 16.7 0.0 1.5 1 tr|F7EVA4|F7EVA4_MONDO Uncharacterized protein OS=Monodelphi 0.0066 16.8 0.1 0.017 15.5 0.0 1.7 2 tr|F7EYH0|F7EYH0_MONDO Protein arginine methyltransferase 3 0.0069 16.8 0.0 0.015 15.7 0.0 1.5 1 tr|F6QCU8|F6QCU8_MONDO NOP2/Sun RNA methyltransferase family ------ inclusion threshold ------ 0.044 14.1 0.0 0.11 12.9 0.0 1.6 1 tr|F6YAE8|F6YAE8_MONDO Fibrillarin OS=Monodelphis domestica 0.077 13.3 0.0 0.13 12.6 0.0 1.3 1 tr|F6RHT5|F6RHT5_MONDO NOP2/Sun RNA methyltransferase family 0.13 12.6 0.0 0.23 11.8 0.0 1.4 1 tr|F6YIJ3|F6YIJ3_MONDO Uncharacterized protein OS=Monodelphi 0.14 12.5 0.0 0.38 11.1 0.0 1.8 1 tr|F7FVJ3|F7FVJ3_MONDO Protein-L-isoaspartate O-methyltransf Domain annotation for each sequence (and alignments): >> tr|F6Q075|F6Q075_MONDO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Monodelphis domestica OX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 231.2 0.0 6.6e-72 1e-68 1 177 [] 21 200 .. 21 200 .. 0.98 Alignments for each domain: == domain 1 score: 231.2 bits; conditional E-value: 6.6e-72 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT......-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqpmaplpgvttiqgditdpetiekikeals 84 +r+Rsa+KLl++de+f+lf+ ++++vDl+aaPG+wsqvl+++lg+ + +vavDlq maplpgv +iqgdit+ +t+++i +++ tr|F6Q075|F6Q075_MONDO 21 WRARSAFKLLQLDEEFQLFSGVRRAVDLCAAPGSWSQVLSRKLGEdesPACIVAVDLQAMAPLPGVVQIQGDITKASTAQEIIGHFE 107 79*****************************************88554499************************************ PP HSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEE CS FtsJ 85 erkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseef 171 ++++dlvv+Dgapdv+g hd+dey+q+qLllaal++a+++lkpgg+fv+kifrg++++ l++ql+ fF +v ++kP+ssr++s e+f tr|F6Q075|F6Q075_MONDO 108 GQPADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNIAIHVLKPGGSFVAKIFRGRDVTLLYSQLRIFFPDVVCAKPRSSRNSSIEAF 194 *************************************************************************************** PP EEEEEE CS FtsJ 172 lvcrgf 177 vcrgf tr|F6Q075|F6Q075_MONDO 195 AVCRGF 200 ****98 PP >> tr|F6UUX8|F6UUX8_MONDO pre-rRNA processing protein FTSJ3 OS=Monodelphis domestica OX=13616 GN=FTSJ3 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 189.1 0.1 5.6e-59 8.4e-56 1 177 [] 24 200 .. 24 200 .. 0.99 Alignments for each domain: == domain 1 score: 189.1 bits; conditional E-value: 5.6e-59 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87 +rsRsa+KL++++ +f+++++ ++ +Dl+aaPGgw qv+++ + ++ +v+vDl p++p+p+v t+q dit+++ ++++++ l+ k tr|F6UUX8|F6UUX8_MONDO 24 FRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVASKFMPVSSLIVGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELKTWK 110 79***************99************************999***************************************** PP EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174 vd+v+ Dgap+v ++ d+y q++L l al+la++ l++gg+f++k+fr+++ + ll ++++F++v+ +kP++sr+es+e+f++c tr|F6UUX8|F6UUX8_MONDO 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRHVQATKPQASRQESAEIFVIC 197 *************************************************************************************** PP EEE CS FtsJ 175 rgf 177 +gf tr|F6UUX8|F6UUX8_MONDO 198 QGF 200 *98 PP >> tr|F7DTG4|F7DTG4_MONDO E3 ubiquitin-protein ligase RNF8 OS=Monodelphis domestica OX=13616 GN=RNF8 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 119.6 0.0 1.2e-37 1.8e-34 2 175 .. 1119 1333 .. 1118 1335 .. 0.86 Alignments for each domain: == domain 1 score: 119.6 bits; conditional E-value: 1.2e-37 TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--........... CS FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm........... 57 +R+a+K+++id f+ +f+ p + + D++a+PGg+s+++l+r + ++k ++++l +p+ tr|F7DTG4|F7DTG4_MONDO 1119 LNRAAMKMANIDFVFDrMFTnPKDSlgnsllkdrspellyFADVCAGPGGFSEYVLWRKKWHAKGFGMTLkGPNdfkledfyaas 1203 68*************8677634433666777777788888******************75589*******888888776666655 PP ....---TT-EEE..E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEE CS FtsJ 58 ....aplpgvtti..qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfv 132 +p g i gd+t+p +i ++++++ + ++v+++++Dg+++v+ +++l+e+l+ qLll+++ ++l+++++gg+f+ tr|F7DTG4|F7DTG4_MONDO 1204 selfEPYYGDGGIdgDGDVTRPGNITAFRNFILDntdrKGVHFMMADGGFSVEKQENLQEILSKQLLLCQFLTGLSVIRTGGHFI 1288 544444445555599***********88866655566599********************************************* PP EEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEE CS FtsJ 133 lkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcr 175 +k+f+ ++ ++ +l++ l ++Fe+vs++kP +sr+++se+++vc+ tr|F7DTG4|F7DTG4_MONDO 1289 CKTFDlFTPFSvGLIYLLYTCFERVSLFKPVTSRPANSERYVVCK 1333 ******999999********************************8 PP >> tr|F6XIP7|F6XIP7_MONDO Cap methyltransferase 2 OS=Monodelphis domestica OX=13616 GN=CMTR2 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.6 0.0 5.6e-30 8.5e-27 4 176 .. 113 319 .. 110 320 .. 0.83 2 ? 4.5 0.1 0.026 40 97 176 .. 609 689 .. 575 690 .. 0.84 Alignments for each domain: == domain 1 score: 94.6 bits; conditional E-value: 5.6e-30 HHHHHHHHHHHHH--S-TT......-EEEEES-TT-HHHHHHTTT........-SEEEEEESS--........---TT-EEE..... CS FtsJ 4 RsayKLleidekfklfkpg......ktvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm........aplpgvtti..... 66 ++++K e++ f l+ ++ + v+l+ aPG+++ l++ l ++++va +l+p+ i tr|F6XIP7|F6XIP7_MONDO 113 QAWCKFHEVLCSFPLIPQEafqngeLNSVHLCEAPGAFIASLNHYLRShnipcDWNWVANTLNPYheandnlmM-------Imddrl 192 688888888888886643323333355*****************9954444446***********755554440.......334444 PP ..............E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-. CS FtsJ 67 ..............qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr. 137 +gdi++ + ++ ++s+ + v+lv++Dg++d++g+ +e+l s L + + +al +l++gg+fvlk+f+ tr|F6XIP7|F6XIP7_MONDO 193 iantlpwwyfgpdnTGDIMTLKHLTGLQHFISNmSTVHLVTADGSFDCQGNPGEQEALVSPLHYCEVVTALMTLGNGGSFVLKMFTl 279 45555777777**9****999999999987777788*************************************************** PP STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS FtsJ 138 geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176 +e+++ +l++ l++ Fe+++v+kP++s+ ++se+++vc+ tr|F6XIP7|F6XIP7_MONDO 280 FEHCSiNLMYLLNCSFEEIHVFKPATSKAGNSEVYVVCLY 319 *****9********************************85 PP == domain 2 score: 4.5 bits; conditional E-value: 0.026 ----S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS FtsJ 97 pdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176 +++s+ hd + q q +l + +l l++g++++l ++ ++++ +++ l ++F+ ++ P ss + s + l+c g tr|F6XIP7|F6XIP7_MONDO 609 FCCSLLHDGKPEYQ-QVFLDCFLRSLPRLQKGDVLILPVLScFTRFMaGMVFVLHSCFRFITFSCPTSSEPLSTCAVLLCVG 689 45566666666666.5777777778999**********999888888799999*******************9999999977 PP >> tr|F7FNT7|F7FNT7_MONDO NOP2/Sun RNA methyltransferase family member 6 OS=Monodelphis domestica OX=13616 GN=NSUN6 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 0.0 7.7e-10 1.2e-06 21 147 .. 234 385 .. 224 391 .. 0.73 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 7.7e-10 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..---.TT-EEEE--TTSSSHHHHHHHHHHH............SSEEEEE CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl.pgvttiqgditdpetiekikealse............rkvdlvv 92 pg++++D +aaPGg + ++ + +g v+a+D p +++ ++ ++q + + + k al++ + +d ++ tr|F7FNT7|F7FNT7_MONDO 234 PGEKILDMCAAPGGKTTHIAALMRDQGEVIAMDKIPSkvEKIkQNAALLQLNCIRAFCCNGTK-ALGKiedgqggppfspESFDRIL 319 8999*******************999********99866444456666666654444444222.23334445667888887888888 PP E----.......---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHHH CS FtsJ 93 sDgap.......dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr...geeteallkq 147 D +++ +++l+e+++ L ++ +++a++llkpgg++v +++ e+ e+++ + tr|F7FNT7|F7FNT7_MONDO 320 LDAPCsgmgqrpNMTYTWTLKEVMSYqPLQRKLFTVAVQLLKPGGVLVYSTCTitlAENEEQVAWA 385 8853244555559999999999999769********************887776656666666555 PP >> tr|F6U5C4|F6U5C4_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 GN=NSUN3 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.0 5.9e-07 0.00089 19 149 .. 130 282 .. 116 290 .. 0.68 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 5.9e-07 S-TT-EEEEES-TT-HHHHHHTTT..............-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE- CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrl...........gakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsD 94 +++g++v+D +aaPGg s llq + ++k++ +l + p p +++i+ +d + i +++ + +d v+ D tr|F6U5C4|F6U5C4_MONDO 130 IQNGERVLDMCAAPGGKSVALLQCAypgyfhcneydNLRSKWLKQTLESFIPQPMMNIIKVSELDGREIGDLQPEM----FDKVLVD 212 46899****************9999666666544332258999999999999999999988888888888888755....8888888 PP ---..........---S-HHHHHHHH.......HHHHHHHHHH...HHHHEEEEEEEEEEEE-..STTHHHHHHH.HG CS FtsJ 95 gap..........dvsgvhdldeylq.......sqLllaalel...alkllkpggtfvlkifr..geeteallkq.lk 149 d +++ + + l +lel a+k l+pgg++v +++ ++e +++++q l+ tr|F6U5C4|F6U5C4_MONDO 213 APCsndrswlfssD----TQKAS--YrlnqrkeL--PLVQLELlrsAIKALRPGGSLVYSTCTlsKAENSEVISQvLN 282 64344444443221....22222..133455333..33333332236688********99999865555577777554 PP >> tr|F6WS57|F6WS57_MONDO NOP2/Sun RNA methyltransferase family member 5 OS=Monodelphis domestica OX=13616 GN=NSUN5 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.0 1.1e-06 0.0016 21 96 .. 225 306 .. 206 364 .. 0.77 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 1.1e-06 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---...TT-EEE...E--TTSSSHHHHHHHHHHHSSEEEEEE-- CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......apl...pgvtti...qgditdpetiekikealserkvdlvvsDg 95 pg +v+D +aaPG+ + l+ l+++gk++a+Dl + + l gv++ + d+++ + + ++v+ ++ D tr|F6WS57|F6WS57_MONDO 225 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAGrlaamaT-LltrAGVSCCeiaNEDFLSISPSNPRY-----SRVQYILLDP 305 7899*******************999********9996755432.133455555555566666555554222.....3466666665 PP - CS FtsJ 96 a 96 + tr|F6WS57|F6WS57_MONDO 306 S 306 5 PP >> tr|F7EVA4|F7EVA4_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 4.8e-06 0.0073 21 96 .. 431 509 .. 351 581 .. 0.70 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 4.8e-06 TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.......SSEEEEEE--- CS FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.......rkvdlvvsDga 96 + ++++D ++aPGg + +++q ++++g+++a D + +++++ g+ + + ++i + ++ ++d v+ D tr|F7EVA4|F7EVA4_MONDO 431 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAE----RLKSVVGNLHRLGVTNTIISHDDGrhfpkvvGGFDRVLLDAP 509 45679******************98888888887764....444444444444444444432222333334433555555544 PP >> tr|F7EYH0|F7EYH0_MONDO Protein arginine methyltransferase 3 OS=Monodelphis domestica OX=13616 GN=PRMT3 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.1 4.9 7.5e+03 53 76 .. 189 212 .. 188 225 .. 0.75 2 ! 15.5 0.0 1.1e-05 0.017 17 66 .. 259 315 .. 241 355 .. 0.75 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 4.9 ESS-----TT-EEEE--TTSSSHH CS FtsJ 53 Dlqpmaplpgvttiqgditdpeti 76 Dlq m+++ + ++++d+++ + tr|F7EYH0|F7EYH0_MONDO 189 DLQRMKQFAQDFVMNADVRTNSSS 212 899999999999999999666544 PP == domain 2 score: 15.5 bits; conditional E-value: 1.1e-05 --S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---TT-EEE CS FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........aplpgvtti 66 ++f ++k v+D+g+++G s ++++ ga ++v++vD+ ++ ++l+g+ t+ tr|F7EYH0|F7EYH0_MONDO 259 HIF-KDKVVLDVGCGTGILSMFAAKA-GA-KQVIGVDQSEIiyqamdiirlNKLEGIITL 315 556.6789******************.88.99******9998855444333233344333 PP >> tr|F6QCU8|F6QCU8_MONDO NOP2/Sun RNA methyltransferase family member 2 OS=Monodelphis domestica OX=13616 GN=NSUN2 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 9.8e-06 0.015 20 137 .. 181 328 .. 149 346 .. 0.69 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 9.8e-06 -TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---...TT-EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........apl...pgvttiqgditdpetiekikealserk 87 +p ++++D +aaPG+ + l + l+a +g v+a D+ + + + p + +++ d + + i ++++k tr|F6QCU8|F6QCU8_MONDO 181 QPHHKILDMCAAPGSKTAQLIEMLHAdmnvsfpEGFVIANDVDNKrcyllvhqaK-RlssPCIMVVNHDASSIPRLQ-ID--MNGKK 263 57899*******************7766666666********7766888887743.334555555577766555555.22..23322 PP ....EEEEEE----........---S-HHHHHHHH......HHHHHHHHHHHH...HHEEEEEEEEEEEE- CS FtsJ 88 ....vdlvvsDgap........dvsgvhdldeylq......sqLllaalelal...kllkpggtfvlkifr 137 d +++D+ + +d ++ +qL +l++a+ ++l++gg +v ++ tr|F6QCU8|F6QCU8_MONDO 264 evlfYDRILCDVPCsgdgtmrkN------IDVWKKwttlnsLQLHGLQLRIATrgvEQLAEGGRMVYSTCS 328 23339999***854454444443......444444555554888888888876222688899999977666 PP >> tr|F6YAE8|F6YAE8_MONDO Fibrillarin OS=Monodelphis domestica OX=13616 GN=FBL PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 7.1e-05 0.11 13 98 .. 151 240 .. 139 295 .. 0.81 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 7.1e-05 HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdl 90 ++ + ++pg +v+ lgaa G ++ +g++g v+av + +++ ++ + d ++p + +++ vd+ tr|F6YAE8|F6YAE8_MONDO 151 VDQIH-IRPGAKVLYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRsgrdlinvaKKRTNIIPVIEDARHPHKYRMLIG-----MVDV 231 57777.88**********************************999787665543344555555999999999998886.....59** PP EEE---.-- CS FtsJ 91 vvsDga.pd 98 + +D+a pd tr|F6YAE8|F6YAE8_MONDO 232 IFADVAqPD 240 ****99444 PP >> tr|F6RHT5|F6RHT5_MONDO NOP2/Sun RNA methyltransferase family member 4 OS=Monodelphis domestica OX=13616 GN=NSUN4 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 8.5e-05 0.13 19 132 .. 184 316 .. 176 339 .. 0.62 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 8.5e-05 S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----..TT-EEE.........E--TTSSSHHHHHHHHHHHSSEEEEEE- CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl..pgvtti.........qgditdpetiekikealserkvdlvvsD 94 ++pg+tv+Dl+a+PGg + ll g ++ a D+ + + ++v + q +t+++ ++ l+++ d v+ D tr|F6RHT5|F6RHT5_MONDO 184 VQPGDTVLDLCAGPGGKTLALLLT-GCCRHLAANDISTSRTRrlKQV--LhsyvpqdvsQVRVTSQDGRK--WGDLERSTYDRVLVD 265 4699************99888877.4447788888877744423222..222353333344444443333..233556788888888 PP ------S-HHHHHHHH.............HHHHHHHHHHHH.HHEEEEEEEE CS FtsJ 95 gapdvsgvhdldeylq.............sqLllaalelal.kllkpggtfv 132 + +++ +h++ e + + +l+ +l +a kpgg+ v tr|F6RHT5|F6RHT5_MONDO 266 VP-CTTDRHSVLEEDNnifkrsrkverqmMPMLQVQLLVAGlLATKPGGVAV 316 84.6666655555555466666666666555555555554324555666655 PP >> tr|F6YIJ3|F6YIJ3_MONDO Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 0.00015 0.23 19 42 .. 129 152 .. 115 160 .. 0.86 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00015 S-TT-EEEEES-TT-HHHHHHTTT CS FtsJ 19 fkpgktvvDlgaaPGgwsqvllqr 42 +++g++v+D +aaPGg s llq tr|F6YIJ3|F6YIJ3_MONDO 129 LQNGERVLDMCAAPGGKSVALLQC 152 56899***********98888875 PP >> tr|F7FVJ3|F7FVJ3_MONDO Protein-L-isoaspartate O-methyltransferase OS=Monodelphis domestica OX=13616 GN=PCMT1 PE=3 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00025 0.38 16 57 .. 139 180 .. 131 250 .. 0.75 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00025 H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57 f+ ++ g +++D+g++ G + + ++ +ga+gkv+++D + tr|F7FVJ3|F7FVJ3_MONDO 139 FDQLHDGAKALDVGSGSGILTACFARMVGATGKVIGIDHIKE 180 45567999******************************8553 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (177 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 549 (0.0258086); expected 425.4 (0.02) Passed bias filter: 486 (0.0228469); expected 425.4 (0.02) Passed Vit filter: 43 (0.00202144); expected 21.3 (0.001) Passed Fwd filter: 14 (0.000658142); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08 # Mc/sec: 24926.57 // [ok]