# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-68 231.1 0.1 1.5e-68 230.7 0.1 1.1 1 tr|Q8CBC7|Q8CBC7_MOUSE Putative tRNA (cytidine(32)/guanosine
5.7e-56 189.7 0.0 1.1e-55 188.9 0.0 1.5 1 sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=
1.9e-51 175.0 0.0 2.2e-51 174.8 0.0 1.0 1 sp|Q9CPY0|MRM2_MOUSE rRNA methyltransferase 2, mitochondri
1.1e-38 133.5 0.0 2.5e-38 132.2 0.0 1.7 1 sp|Q9DBC3|CMTR1_MOUSE Cap-specific mRNA (nucleoside-2'-O-)-
1.7e-29 103.5 0.1 2.2e-27 96.6 0.0 2.5 2 sp|Q8BWQ4|CMTR2_MOUSE Cap-specific mRNA (nucleoside-2'-O-)-
1.9e-06 28.4 0.0 3.8e-06 27.4 0.0 1.4 1 sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=M
0.00068 20.1 0.0 0.0012 19.3 0.0 1.4 1 sp|Q8K4F6|NSUN5_MOUSE Probable 28S rRNA (cytosine-C(5))-met
0.0018 18.7 0.0 0.0035 17.8 0.0 1.4 1 sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-met
0.0062 17.0 0.0 0.015 15.7 0.0 1.6 1 sp|Q8CCT7|NSUN3_MOUSE tRNA (cytosine(34)-C(5))-methyltransf
0.0065 16.9 0.4 0.022 15.2 0.1 2.0 2 sp|Q922H1|ANM3_MOUSE Protein arginine N-methyltransferase
------ inclusion threshold ------
0.021 15.2 0.0 0.049 14.1 0.0 1.6 1 sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransf
0.023 15.1 0.1 0.062 13.7 0.1 1.7 1 sp|P35550|FBRL_MOUSE rRNA 2'-O-methyltransferase fibrillar
0.027 14.9 0.0 0.046 14.1 0.0 1.4 1 sp|Q91WU5|AS3MT_MOUSE Arsenite methyltransferase OS=Mus mus
0.044 14.2 0.0 0.092 13.2 0.0 1.5 1 sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O
0.093 13.1 0.0 0.18 12.2 0.0 1.6 1 sp|Q6NZB1|ANM6_MOUSE Protein arginine N-methyltransferase
Domain annotation for each sequence (and alignments):
>> tr|Q8CBC7|Q8CBC7_MOUSE Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Mus musculus OX=10090 GN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 230.7 0.1 9.8e-72 1.5e-68 1 177 [] 21 199 .. 21 199 .. 0.98
Alignments for each domain:
== domain 1 score: 230.7 bits; conditional E-value: 9.8e-72
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.....-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga..kgkvvavDlqpmaplpgvttiqgditdpetiekikealse 85
+r+Rsa+KLl++de+f+lfk +k++vDl+aaPG+wsqvl+q++g +g+vvavDlq maplpgv +iqgdit+ +t+++i +++++
tr|Q8CBC7|Q8CBC7_MOUSE 21 WRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGqgSGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEG 107
79*****************************************76556*************************************** PP
SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEE CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseefl 172
++dlvv+Dgapdv+g hd+dey+q+qLllaal++a+++lk gg+fv+kifrg++++ l++ql+ fF++v ++kPkssr++s e+f
tr|Q8CBC7|Q8CBC7_MOUSE 108 CPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNSSIEAFA 194
*************************************************************************************** PP
EEEEE CS
FtsJ 173 vcrgf 177
vc+g+
tr|Q8CBC7|Q8CBC7_MOUSE 195 VCQGY 199
**986 PP
>> sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus OX=10090 GN=Ftsj3 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 188.9 0.0 7.1e-59 1.1e-55 1 177 [] 24 200 .. 24 200 .. 0.99
Alignments for each domain:
== domain 1 score: 188.9 bits; conditional E-value: 7.1e-59
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEE CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvd 89
yrsRsa+KL++++ +f+++++ ++ +Dl+aaPGgw qv+++ + ++ +v+vDl p++plp+v t+q dit+++ ++++++ l+ kvd
sp|Q9DBE9|SPB1_MOUSE 24 YRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
9****************99************************999******************************************* PP
EEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 90 lvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+v+ Dgap+v ++ d+y q++L l al+la++ l++gg+f++k+fr+++ + ll ++++F++v+ +kP++sr es+e+f+vc+gf
sp|Q9DBE9|SPB1_MOUSE 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQGF 200
**************************************************************************************98 PP
>> sp|Q9CPY0|MRM2_MOUSE rRNA methyltransferase 2, mitochondrial OS=Mus musculus OX=10090 GN=Mrm2 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 174.8 0.0 1.5e-54 2.2e-51 1 176 [. 52 236 .. 52 237 .. 0.96
Alignments for each domain:
== domain 1 score: 174.8 bits; conditional E-value: 1.5e-54
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.......-....SEEEEEESS-----TT-EEE.E--TTSSSHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga....k....gkvvavDlqpmaplpgvtti.qgditdpetiekik 80
yr+Rsa+KLle++ek+++++pg +v+D+gaaPG+wsqv++qr++a + g v++vDl ++ pl g t++ +d+tdp+t +ki+
sp|Q9CPY0|MRM2_MOUSE 52 YRCRSAFKLLEMNEKHQILRPGLRVLDCGAAPGAWSQVAVQRVNAtgadSsspvGFVLGVDLLHIFPLAGATFLcPADVTDPRTFQKIL 140
9******************************************7755541566799******************99************* PP
HHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------E CS
FtsJ 81 ealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesse 169
e+l r++d+++sD+ap+ +g++dld+ + ++L+l + +a+++l pggt+++k++ g+++ l k+l + F++ +vvkP++sr+esse
sp|Q9CPY0|MRM2_MOUSE 141 ELLPSRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLLQKRLTQEFQSTRVVKPEASRKESSE 229
****************************************************************99*********************** PP
EEEEEEE CS
FtsJ 170 eflvcrg 176
++l++++
sp|Q9CPY0|MRM2_MOUSE 230 VYLLATQ 236
***9987 PP
>> sp|Q9DBC3|CMTR1_MOUSE Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Mus musculus OX=10090 GN=Cmtr1 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 132.2 0.0 1.7e-41 2.5e-38 2 176 .. 232 447 .. 231 448 .. 0.85
Alignments for each domain:
== domain 1 score: 132.2 bits; conditional E-value: 1.7e-41
TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--.............- CS
FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.............a 58
+R+a+K++++d f+ +f+ p + + D++a+PGg+s+++l+r + ++k ++++l +p+
sp|Q9DBC3|CMTR1_MOUSE 232 LNRAAMKMANMDFVFDrMFTnPLDSsgkpllkesdidllyFADVCAGPGGFSEYVLWRKKWHAKGFGMTLkGPNdfkledfysasseL 319
68*************8666533322555666677777777******************75589*******878887666555544430 PP
--TT-EEE...........E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEE CS
FtsJ 59 plpgvtti...........qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtf 131
+ gdit+pe+i+++++++ + ++v++v++Dg+++v+g+++l+e+l+ qLll+++ +al+++++gg+f
sp|Q9DBC3|CMTR1_MOUSE 320 -------FepyygeggvdgDGDITRPENINAFRNFVLDntdrKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHF 400
.......144455555599***********99976666666699******************************************** PP
EEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
FtsJ 132 vlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
v+k+f+ ++ ++ +l++ l ++Fe+v ++kP +sr+++se+++vc+g
sp|Q9DBC3|CMTR1_MOUSE 401 VCKTFDlFTPFSvGLIYLLYCCFERVCLFKPITSRPANSERYVVCKG 447
*******999999********************************97 PP
>> sp|Q8BWQ4|CMTR2_MOUSE Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 OS=Mus musculus OX=10090 GN=Cmtr2 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 96.6 0.0 1.5e-30 2.2e-27 3 177 .] 112 320 .. 110 320 .. 0.85
2 ? 4.2 0.0 0.034 51 96 162 .. 608 675 .. 584 690 .. 0.80
Alignments for each domain:
== domain 1 score: 96.6 bits; conditional E-value: 1.5e-30
SHHHHHHHHHHHHH--S-TT......-EEEEES-TT-HHHHHHTTT........-SEEEEEESS--...........---TT-EEE.. CS
FtsJ 3 sRsayKLleidekfklfkpg......ktvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm...........aplpgvtti.. 66
+++++K +ei+ f l+ ++ + ++l+ aPG+++ l++ l+ ++ +va l+p+ +
sp|Q8BWQ4|CMTR2_MOUSE 112 TQAWCKFQEILCSFPLIPQEafqsgrLNSLHLCEAPGAFIASLNHYLKShrfpcEWSWVANSLNPYheandnlrmitD-------Drl 192
57999*********98754334444455******************965555556***********765555544441.......033 PP
..............E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.S CS
FtsJ 67 ..............qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.g 138
+gdi++ + ++++ls+ ++++lv++Dg++d++g+ +e+l s+L + +al +l+ gg+fvlk+f+ +
sp|Q8BWQ4|CMTR2_MOUSE 193 mantlhcwyfgpdnTGDIMTLKYLTGLQDFLSGmSPIHLVTADGSFDCQGNPGEQEALVSSLHYCEAVTALITLGDGGSFVLKMFTlF 280
344445558999999999999999999999998889***************999999999**************************** PP
TTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 139 eete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
e+++ +l++ l++ F++v+v+kP++s+ ++se+++vc+++
sp|Q8BWQ4|CMTR2_MOUSE 281 EHCSvNLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLRY 320
****9********************************975 PP
== domain 2 score: 4.2 bits; conditional E-value: 0.034
-----S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE---- CS
FtsJ 96 apdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPks 162
a+++s+ hd d + q +L+l l +l+ l +g+++vl i+ ++++ +l l +F+ ++ P s
sp|Q8BWQ4|CMTR2_MOUSE 608 AFSCSLLHDGDPAYQ-HLFLDCLLHSLRRLHRGDVMVLPILScFTRFMaGLTFVLHGCFRFITFSCPTS 675
4589999*******9.7***********************99877887455555999998887777765 PP
>> sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus OX=10090 GN=Nsun6 PE=2 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.4 0.0 2.6e-09 3.8e-06 21 150 .. 234 390 .. 223 392 .. 0.75
Alignments for each domain:
== domain 1 score: 27.4 bits; conditional E-value: 2.6e-09
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES..S--......---TT-EEE...E--TTSSSHHHHHHHHHHH.....SSEEEEE CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDl..qpm......aplpgvtti...qgditdpetiekikealse.....rkvdlvv 92
pg++++D +aaPGg + + ++ kg v+a+D ++ a l g+++i + d t+ + ++ ++ + +d ++
sp|Q7TS68|NSUN6_MOUSE 234 PGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKilTKVnklkqnASLLGLHSIrafCFDATKALKLDTTDGIEGGppflpESFDRII 321
8999*******************999*******8534446555443333444445559999988888877765555888887777777 PP
E----.......---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHHHHGG CS
FtsJ 93 sDgap.......dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr...geeteallkqlkk 150
D ++ +++l+e+++ L ++ l++a++llkpgg++v +++ e+ e+++ +l++
sp|Q7TS68|NSUN6_MOUSE 322 LDAPCsgmgqrpNMACTWTLKEVTSYqPLQRKLLHVAVQLLKPGGVLVYSTCTitlAENEEQVAWALRT 390
7743234444559999999999999768********************887777667777787777765 PP
>> sp|Q8K4F6|NSUN5_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun5 PE=2 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.3 0.0 7.8e-07 0.0012 21 101 .. 226 312 .. 207 364 .. 0.79
Alignments for each domain:
== domain 1 score: 19.3 bits; conditional E-value: 7.8e-07
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---...TT-EEE...E--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......apl...pgvtti...qgditdpetiekikealserkvdlvvsDga 96
pg +v+D +aaPG+ + +++ l+++gk++a+D+ + l gv++ + d+++ + ++ ++v+ ++ D +
sp|Q8K4F6|NSUN5_MOUSE 226 PGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKrlaamaT-LvarAGVSCCelaEKDFLTVSPSDQRY-----SQVQYILLDPS 307
7899*******************999********8776765541.134477777788888888877777444.....35888888877 PP
----S CS
FtsJ 97 pdvsg 101
+ sg
sp|Q8K4F6|NSUN5_MOUSE 308 CSGSG 312
54444 PP
>> sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nop2 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.8 0.0 2.3e-06 0.0035 21 132 .. 369 498 .. 350 518 .. 0.67
Alignments for each domain:
== domain 1 score: 17.8 bits; conditional E-value: 2.3e-06
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.......SSEEEEEE-------S- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.......rkvdlvvsDgapdvsgv 102
+ ++++D ++aPGg + +++q ++++g+++a D + ++++++ g+ + + ++i + ++ ++d v+ D + +gv
sp|Q922K7|NOP2_MOUSE 369 EHERILDMCCAPGGKTSYIAQLMKNTGVILANDANA----DRLKSVVGNLHRLGVTNTIISHYDGrqfpkvvGGFDRVLLDAPCSGTGV 453
45679******************8878888888776....5666666666666666666655555555556544555555554444444 PP
HHHHHHHH...............HHHHHHHHHHHHHHEEEEEEEE CS
FtsJ 103 hdldeylq...............sqLllaalelalkllkpggtfv 132
++d +++ +Lll+a+ + k+gg +v
sp|Q922K7|NOP2_MOUSE 454 ISKDPAVKtnkdekdiqrcahlqKELLLSAIDSVNAASKTGGYLV 498
444444444444444444444444677777766666666666665 PP
>> sp|Q8CCT7|NSUN3_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial OS=Mus musculus OX=10090 GN=Nsun3 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 1e-05 0.015 20 138 .. 130 269 .. 108 285 .. 0.63
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 1e-05
-TT-EEEEES-TT-HHHHHHTTT..............-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrl...........gakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDga 96
+ g++v+Dl+aaPGg s llq ++g+++ +l + p p +++i+ +d + + ++a +d v+ D
sp|Q8CCT7|NSUN3_MOUSE 130 RDGEAVLDLCAAPGGKSVALLQCAypgyllcneydRPRGRWLRQTLESFIPQPLINVIKVSELDGREMGDAQPA----TFDKVLVDAP 213
46789***************999866666654443225899999999988888888887666666666666664....3777777753 PP
-..........---S-HHHHHHHH..........HHHHHHHHHHHHHHEEEEEEEEEEEE-..S CS
FtsJ 97 p..........dvsgvhdldeylq..........sqLllaalelalkllkpggtfvlkifr..g 138
d +++ +y+ ++L+++a++ l+pgg +v +++ +
sp|Q8CCT7|NSUN3_MOUSE 214 CsndrswlfssD----SQKAAYRIhqrknlpvlqVELVRSAIKA----LRPGGLLVYSTCTlsK 269
344444443330....2222222233433322225555555555....8999998887777543 PP
>> sp|Q922H1|ANM3_MOUSE Protein arginine N-methyltransferase 3 OS=Mus musculus OX=10090 GN=Prmt3 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.0 3.5 5.2e+03 53 81 .. 180 208 .. 179 221 .. 0.80
2 ! 15.2 0.1 1.5e-05 0.022 17 70 .. 249 310 .. 238 361 .. 0.72
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 3.5
ESS-----TT-EEEE--TTSSSHHHHHHH CS
FtsJ 53 Dlqpmaplpgvttiqgditdpetiekike 81
Dlq+m+++ + +++ d+++ + +i +
sp|Q922H1|ANM3_MOUSE 180 DLQKMKQFAQDFVMNVDVRTCSSTTTIAD 208
89999999999999999988777776665 PP
== domain 2 score: 15.2 bits; conditional E-value: 1.5e-05
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---.TT-EEEE--T CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........apl.pgvttiqgdi 70
++f ++k v+D+g+++G s ++++ ga +kv+avD+ ++ + l + + +i+g i
sp|Q922H1|ANM3_MOUSE 249 HIF-KDKVVLDVGCGTGILSMFAAKV-GA-KKVIAVDQSEIlyqamdiirlnK-LeDTIVLIKGKI 310
566.6889***************999.88.9*******999774433332211.123333334433 PP
>> sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun2 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.1 0.0 3.3e-05 0.049 20 137 .. 175 322 .. 146 340 .. 0.66
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 3.3e-05
-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---..TT-EEEE--TTSSSHHHHHHHHHHHSS.. CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........apl..pgvttiqgditdpetiekikealserk.. 87
+p ++++D +aaPG+ + l + l+a +g v+a D+ + + l p + +++ d + +++rk
sp|Q1HFZ0|NSUN2_MOUSE 175 EPHHKILDMCAAPGSKTTQLIEMLHAdmsvpfpEGFVIANDVDNKrcyllvhqaKRLssPCIMVVNHDASSIPRLT--V-DVDGRKei 259
57899*******************77666666669*******7765788876643333444444455554333332..1.12222223 PP
..EEEEEE----........---S-HHHHHHHH......HHHHHHHHHHHH...HHEEEEEEEEEEEE- CS
FtsJ 88 ..vdlvvsDgap........dvsgvhdldeylq......sqLllaalelal...kllkpggtfvlkifr 137
d +++D+ + +d ++ +qL +l++a+ ++l++gg +v ++
sp|Q1HFZ0|NSUN2_MOUSE 260 lfYDRILCDVPCsgdgtmrkN------IDVWKKwttlnsLQLHGLQLRIATrgaEQLAEGGRMVYSTCS 322
338999999754443333333......444444555544788888888877333588889988877666 PP
>> sp|P35550|FBRL_MOUSE rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus OX=10090 GN=Fbl PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.7 0.1 4.2e-05 0.062 13 99 .. 158 248 .. 146 301 .. 0.79
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 4.2e-05
HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEE CS
FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlvv 92
++ + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ + d ++p + +++ vd++
sp|P35550|FBRL_MOUSE 158 VDQIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRsgrdlinlaKKRTNIIPVIEDARHPHKYRMLIA-----MVDVIF 240
57788.89**********************************999788666543344555555*********999885.....49**** PP
E---.--- CS
FtsJ 93 sDga.pdv 99
+D+a pd
sp|P35550|FBRL_MOUSE 241 ADVAqPDQ 248
***94443 PP
>> sp|Q91WU5|AS3MT_MOUSE Arsenite methyltransferase OS=Mus musculus OX=10090 GN=As3mt PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.1 0.0 3.1e-05 0.046 23 110 .. 73 170 .. 45 194 .. 0.81
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 3.1e-05
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.................---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.................aplpgvttiqgditdpetiekikealserkvdlvvs 93
+++Dlg++ G + vl+q +g+kg+v ++D+ ++ + p+vt+++g i + + + + + d+v+s
sp|Q91WU5|AS3MT_MOUSE 73 CRILDLGSGSGRDCYVLSQLVGEKGHVTGIDMTEVqvevaktylehhmekfgFQAPNVTFLHGRIEKLAEAGIQS-----ESYDIVIS 155
469********************************9999999998777554434499999999999998887444.....46899999 PP
-------S-HHHHHHHH CS
FtsJ 94 Dgapdvsgvhdldeylq 110
+ +++v d++++lq
sp|Q91WU5|AS3MT_MOUSE 156 NCV--INLVPDKQQVLQ 170
887..555556555555 PP
>> sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus OX=10090 GN=Pcmt1 PE=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.2 0.0 6.2e-05 0.092 16 96 .. 73 144 .. 65 184 .. 0.66
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 6.2e-05
H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDga 96
f+ +++g +++D+g++ G + + ++ +g++gkv+++D + +++ it+ ++ + ++ ls +v lvv Dg
sp|P23506|PIMT_MOUSE 73 FDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIK-------ELVDDSITNVKKDDPML--LSSGRVRLVVGDGR 144
555679***********************9********866.......23333333333333222..23345666666665 PP
>> sp|Q6NZB1|ANM6_MOUSE Protein arginine N-methyltransferase 6 OS=Mus musculus OX=10090 GN=Prmt6 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 0.00012 0.18 21 96 .. 85 245 .. 70 308 .. 0.61
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00012
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---.TT-EEEE--TTSSSHHHHHHHHHHH............ CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........apl.pgvttiqgditdpetiekikealse............ 85
+gktv+D+ga++G s +++q ga +v+av + l ++v+++ g + + e e++ +se
sp|Q6NZB1|ANM6_MOUSE 85 RGKTVLDVGAGTGILSIFCAQA-GA-RRVYAVEASAIwqqarevvrlnG-LeDRVHVLPGPVETVELPERVDAIVSEwmgygllhesml 170
799*******************.88.9******9999876554443322.135666666666555555555555555555566666666 PP
................................................................SSEEEEEE--- CS
FtsJ 86 ................................................................rkvdlvvsDga 96
++vv D++
sp|Q6NZB1|ANM6_MOUSE 171 ssvlhartkwlkegglllpasaelfvapisdqmlewrlgfwsqvkqhygvdmscmesfatrclmGHSEIVVQDLS 245
666666666666666666655555555555555555555555555555555555555555555555555555555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 22289 (11757923 residues searched)
Passed MSV filter: 559 (0.0250796); expected 445.8 (0.02)
Passed bias filter: 475 (0.021311); expected 445.8 (0.02)
Passed Vit filter: 39 (0.00174974); expected 22.3 (0.001)
Passed Fwd filter: 15 (0.000672978); expected 0.2 (1e-05)
Initial search space (Z): 22289 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.09
# Mc/sec: 23123.92
//
[ok]