# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/FtsJ.hmm.txt
# target sequence database:        proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       FtsJ  [M=177]
Accession:   PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    8.5e-64  214.5   0.0      1e-63  214.3   0.0    1.1  1  tr|S4RR22|S4RR22_PETMA  Putative tRNA (cytidine(32)/guanosine
    1.4e-36  125.9   0.0    2.1e-36  125.3   0.0    1.3  1  tr|S4RLF4|S4RLF4_PETMA  Cap methyltransferase 1 OS=Petromyzon
    9.9e-19   67.7   0.2    5.2e-18   65.4   0.1    2.0  2  tr|S4RTG5|S4RTG5_PETMA  Cap methyltransferase 2 OS=Petromyzon
    4.5e-05   23.2   0.0    0.00012   21.8   0.0    1.7  1  tr|S4RE18|S4RE18_PETMA  NOL1/NOP2/Sun domain family, member 6
      9e-05   22.3   0.1      0.079   12.7   0.0    2.9  3  tr|S4R4I3|S4R4I3_PETMA  Phosphoethanolamine methyltransferase
    9.9e-05   22.1   0.1    0.00029   20.6   0.1    1.7  1  tr|S4RYQ5|S4RYQ5_PETMA  NOP2 nucleolar protein homolog (yeast
     0.0001   22.1   0.1    0.00028   20.6   0.1    1.7  1  tr|S4RYQ4|S4RYQ4_PETMA  NOP2 nucleolar protein homolog (yeast
     0.0013   18.5   0.1     0.0015   18.3   0.1    1.1  1  tr|S4RMF5|S4RMF5_PETMA  HemK methyltransferase family member 
     0.0033   17.2   0.0      0.011   15.4   0.0    1.8  1  tr|S4R827|S4R827_PETMA  Protein-L-isoaspartate (D-aspartate) 
     0.0036   17.0   0.0      0.012   15.3   0.0    1.8  1  tr|S4RVL0|S4RVL0_PETMA  NOL1/NOP2/Sun domain family, member 4
     0.0043   16.8   0.1     0.0051   16.5   0.1    1.2  1  tr|S4RDW6|S4RDW6_PETMA  NADH dehydrogenase [ubiquinone] 1 alp
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.037   13.8   0.0    1.6  1  tr|S4RW29|S4RW29_PETMA  Protein-L-isoaspartate O-methyltransf
       0.05   13.3   0.0      0.078   12.7   0.0    1.5  1  tr|S4RD16|S4RD16_PETMA  NOP2/Sun RNA methyltransferase family


Domain annotation for each sequence (and alignments):
>> tr|S4RR22|S4RR22_PETMA  Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Petromyzon marinus OX=77
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.3   0.0   9.8e-67     1e-63       1     177 []      21     203 ..      21     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.3 bits;  conditional E-value: 9.8e-67
                             TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.........-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHH CS
                    FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl....ga..kgkvvavDlqpmaplpgvttiqgditdpetiekike 81 
                             +r+Rsa+KLl++de+f+lf+ + ++vDl+aaPG+wsqvl+++l    g+  ++k+vavDlq maplpgv ++qgdit+ +t+++i +
  tr|S4RR22|S4RR22_PETMA  21 WRARSAFKLLQLDEEFNLFQGVSHAVDLCAAPGSWSQVLSRKLrgedGKksDAKIVAVDLQAMAPLPGVIQLQGDITKVSTAQEIIK 107
                             79*****************************************765522335*********************************** PP

                             HHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE---------- CS
                    FtsJ  82 alserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsess 168
                             ++++++ dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lk+ggtfv+kifrg++++ l++qlk fF  v+++kP+++ +   
  tr|S4RR22|S4RR22_PETMA 108 HFEGQPSDLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITSHVLKRGGTFVAKIFRGKDVTLLFSQLKVFFPLVTCAKPNTTLPVVP 194
                             *************************************************************************************** PP

                             EEEEEEEEE CS
                    FtsJ 169 eeflvcrgf 177
                             e+f+vc+++
  tr|S4RR22|S4RR22_PETMA 195 EAFVVCQNY 203
                             ******996 PP

>> tr|S4RLF4|S4RLF4_PETMA  Cap methyltransferase 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.0     2e-39   2.1e-36       2     176 ..     192     407 ..     191     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 2e-39
                             TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--............. CS
                    FtsJ   2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm............. 57 
                              +R+++K++++d  f+ +f+ p ++               + D++a+PGg+s+++l+r   ++k ++++l +p+             
  tr|S4RLF4|S4RLF4_PETMA 192 LNRASVKMANMDCVFDfMFTnPKDKngqplvndkggellyFADVCAGPGGFSEYVLWRRSWHAKGFGLTLrGPNdfkledffaapse 278
                             58**************333443322477788888888888******************64489*******88889999998886654 PP

                             ..---TT-EEE..E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE CS
                    FtsJ  58 ..aplpgvtti..qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkif 136
                               + + gv+ +   gdit+ ++ie++++++      r+v++ ++Dg+++v+g+++l+e+l+ qLll++  +al+++++gg+fv+k+f
  tr|S4RLF4|S4RLF4_PETMA 279 mfEAHYGVSGVdgDGDITRSDNIEEFRRFVLCgtegRGVHFLMADGGFSVEGQENLQEILSKQLLLCQALVALSVVRKGGHFVCKTF 365
                             44444788888*************9996543356669************************************************** PP

                             -.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
                    FtsJ 137 r.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
                             + +++++ ++++ l ++F++v ++kP +sr+++se+++vcrg
  tr|S4RLF4|S4RLF4_PETMA 366 DlFTRFSvGVIYLLYRCFSRVCLFKPVTSRPANSERYVVCRG 407
                             ****************************************98 PP

>> tr|S4RTG5|S4RTG5_PETMA  Cap methyltransferase 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.1     5e-21   5.2e-18      24     177 .]     144     327 ..     113     327 .. 0.81
   2 ?   -0.6   0.0      0.87   9.1e+02     118     157 ..     645     686 ..     628     694 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 5e-21
                             EEEEES-TT-HHHHHHTTT........-SEEEEEESS--.......---TT-EEE.............E--TTSSSHHHHHHHHHHH CS
                    FtsJ  24 tvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.......aplpgvtti.............qgditdpetiekikealse 85 
                             + v+l+ aPG+++  l++ + +     k  ++a +l+p        +++p  ++i             +gd +  ++++ +++    
  tr|S4RTG5|S4RTG5_PETMA 144 NSVHLCEAPGAFICSLNHYVRThqaacKLCWLATTLNPFhesntceSMIPDARLIlhtaarwcfgaddTGDAMCLANQNGVRPV--- 227
                             589*************99994434445689*********777777544466666677888888889999999999999999875... PP

                             SSEEEEEE----........---S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE---- CS
                    FtsJ  86 rkvdlvvsDgap........dvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPks 162
                               +  v +D+a+        +  g+   +e+  + L+ + + +al+ll+pgg+fvlk+f+ +e+++  ll  l + F++v+vvkP++
  tr|S4RTG5|S4RTG5_PETMA 228 --CGSVFCDVASvecllrnaCGVGNPGEQEACVAPLVFCETVTALALLAPGGSFVLKLFTlFEHSSaCLLFLLVCTFQEVHVVKPAT 312
                             ..78899999976666664322334555555557**************************98888846666699************* PP

                             ------EEEEEEEEE CS
                    FtsJ 163 srsesseeflvcrgf 177
                             s+ ++se ++vc+gf
  tr|S4RTG5|S4RTG5_PETMA 313 SKAGNSELYVVCLGF 327
                             *************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.87
                             HHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEE CS
                    FtsJ 118 lelalkllkpggtfvlkifr.geete.allkqlkkfFekvsv 157
                             l+l+++ l++g+++vl +    ++++ +++ +l+++F+++s 
  tr|S4RTG5|S4RTG5_PETMA 645 LQLMFSHLAEGDCLVLPLPAaLTRFSaGIIFALSQCFSRLSF 686
                             78899999999999988776656666699999*****99876 PP

>> tr|S4RE18|S4RE18_PETMA  NOL1/NOP2/Sun domain family, member 6 OS=Petromyzon marinus OX=7757 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-07   0.00012      20     149 ..     238     399 ..     230     409 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-07
                             -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---...TT-EEEE--TTSSSHHHHHHHHHHH.......... CS
                    FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........apl...pgvttiqgditdpetiekikealse.......... 85 
                             +pg +v+D +aaPGg +  +++ +g +g ++a+D            a +   + ++t+++d t+                       
  tr|S4RE18|S4RE18_PETMA 238 RPGLRVLDMCAAPGGKTTHIATLMGDTGEIIALDKTAAkvqkiqnnASRlnlKSIQTFCCDSTQ------------Aiasgphtgkg 312
                             58999********************99*******988645444443122122344444444333............03333444446 PP

                             ............SSEEEEEE----..........---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHH CS
                    FtsJ  86 ............rkvdlvvsDgap..........dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr...geeteallk 146
                                         +++d v+ D             +     +l ++++   L ++ l  a++ll+pgg+++  ++     e+  +++ 
  tr|S4RE18|S4RE18_PETMA 313 llwwvghppfpeEYFDRVLLDAPCsalgkrpclgF---PASLRQLQSYaPLQRKLLAAAVALLRPGGVLLYTTCSvasAENERQVAW 396
                             77777788888888999999975455666653333...3444444443368888899999999**9998866665542444446666 PP

                             HHG CS
                    FtsJ 147 qlk 149
                             +l+
  tr|S4RE18|S4RE18_PETMA 397 ALR 399
                             665 PP

>> tr|S4R4I3|S4R4I3_PETMA  Phosphoethanolamine methyltransferase OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   7.6e-05     0.079      22      76 ..      51     111 ..      27     172 .. 0.82
   2 !    6.0   0.0    0.0086         9      19      80 ..     281     348 ..     271     357 .. 0.68
   3 ?   -2.5   0.0       3.4   3.5e+03      10      32 ..     361     392 ..     356     408 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-05
                             T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHH CS
                    FtsJ  22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpeti 76 
                             + +v++lga+ G ++  l+++     +v avD  +          + + +++++q+d+t+ +  
  tr|S4R4I3|S4R4I3_PETMA  51 DAKVLELGAGIGRFTGHLAKQA---RHVTAVDFMQTfldknrelnSDHVNIKFLQADVTQLQFP 111
                             467******************3...68******666599776555555799999****988755 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0086
                             S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--......---.TT-EEE.E--TTSSSHHHHHH CS
                    FtsJ  19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm......apl.pgvtti.qgditdpetiekik 80 
                             ++ g++v+D+g++ Gg   ++++ ++    v+++Dl  +m      +   +  t++ q  i d ++++  +
  tr|S4R4I3|S4R4I3_PETMA 281 LQAGQKVLDVGCGIGGGNFYMAKAFK--VDVLGMDLsSNMveiameR-AtEDSTLLvQFEISDATKRDFPE 348
                             35899*******************85..79******54557755421.12222322577776666666555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.4
                             HHHHHHH--S-TT-E.........EEEES-TT CS
                    FtsJ  10 leidekfklfkpgkt.........vvDlgaaP 32 
                             l+i +kf lfk+  +         + D +++ 
  tr|S4R4I3|S4R4I3_PETMA 361 LHIADKFALFKRFYRwlkpggkllITDYCCGE 392
                             67888888887776655556666677777665 PP

>> tr|S4RYQ5|S4RYQ5_PETMA  NOP2 nucleolar protein homolog (yeast) OS=Petromyzon marinus OX=7757 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.8e-07   0.00029      21     126 ..     185     304 ..     172     339 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.8e-07
                             TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE.E--TTSSSHHHHHHHHHHH..SSEEEEEE----....... CS
                    FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.qgditdpetiekikealse..rkvdlvvsDgap....... 97 
                             ++++ +D +aaPGg + +++q + ++g +va D+++ ++ + v  + +  +t+  + +   +al +  +++d v+ D          
  tr|S4RYQ5|S4RYQ5_PETMA 185 ENEKLLDMCAAPGGKTSYAAQLMRNTGAIVANDVNSERLKSVVGNLhRLGVTNSIVCNYDGRALAKvmSGFDRVLLDAPCsgtgiis 271
                             56779******************999********99755554444444444444444322233333443456666555432222233 PP

                             ...---S-.HHHHHHHHHHHHHHHHHHHHHHEE CS
                    FtsJ  98 ...dvsgv.hdldeylqsqLllaalelalkllk 126
                                +v+    ++d ++ ++L ++ l +a+++l+
  tr|S4RYQ5|S4RYQ5_PETMA 272 kdpSVKTSkDEKDILRCAHLQKQLLLTAIDCLD 304
                             322222220333333334666666666555555 PP

>> tr|S4RYQ4|S4RYQ4_PETMA  NOP2 nucleolar protein homolog (yeast) OS=Petromyzon marinus OX=7757 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.7e-07   0.00028      21     126 ..     194     313 ..     178     347 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
                             TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE.E--TTSSSHHHHHHHHHHH..SSEEEEEE----....... CS
                    FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.qgditdpetiekikealse..rkvdlvvsDgap....... 97 
                             ++++ +D +aaPGg + +++q + ++g +va D+++ ++ + v  + +  +t+  + +   +al +  +++d v+ D          
  tr|S4RYQ4|S4RYQ4_PETMA 194 ENEKLLDMCAAPGGKTSYAAQLMRNTGAIVANDVNSERLKSVVGNLhRLGVTNSIVCNYDGRALAKvmSGFDRVLLDAPCsgtgiis 280
                             56779******************999********99755554444444444444444322233333443456666555432222233 PP

                             ...---S-.HHHHHHHHHHHHHHHHHHHHHHEE CS
                    FtsJ  98 ...dvsgv.hdldeylqsqLllaalelalkllk 126
                                +v+    ++d ++ ++L ++ l +a+++l+
  tr|S4RYQ4|S4RYQ4_PETMA 281 kdpSVKTSkDEKDILRCAHLQKQLLLTAIDCLD 313
                             322222220333333334666666666555555 PP

>> tr|S4RMF5|S4RMF5_PETMA  HemK methyltransferase family member 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.5e-06    0.0015      23     130 ..      60     194 ..      34     195 .] 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.5e-06
                             -EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--TTSSSHHHHHHHHHHH.........SSE CS
                    FtsJ  23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgditdpetiekikealse.........rkv 88 
                              +v+D+g++ G+ s  +l      +  vavD                ++ ++++++q dit    +    ea++          ++ 
  tr|S4RMF5|S4RMF5_PETMA  60 YRVLDIGCGSGAISLAILSASPL-ASCVAVDKSADavalarenaedlSLQDRCSVVQLDITAVGRAAHATEAVGAlgpfdvlvsNPP 145
                             46******************765.999*****8888888887775444449*************99999988877856666665666 PP

                             EEEEE-------S-HHHHHHHH.............HHHHHHHHHHHHHHEEEEEE CS
                    FtsJ  89 dlvvsDgapdvsgvhdldeylq.............sqLllaalelalkllkpggt 130
                              + + D+a     ++      +             ++L++  l+la +++k +g+
  tr|S4RMF5|S4RMF5_PETMA 146 YVFTGDMAALQPEIR------SfedpaalhggedgMDLIKVVLTLAAEVVKDNGS 194
                             666666663222223......2444455779*********************997 PP

>> tr|S4R827|S4R827_PETMA  Protein-L-isoaspartate (D-aspartate) O-methyltransferase OS=Petromyzon marinus OX=7757 PE=4 S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05     0.011      16      63 ..      77     125 ..      67     186 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                             H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--..---TT- CS
                    FtsJ  16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm..aplpgv 63 
                             + lf +g  v+D+g++ G  + ++++ +g +gkv+++D  q+   + +++v
  tr|S4R827|S4R827_PETMA  77 H-LF-EGASVLDVGSGSGYLTACIARMVGSSGKVFGIDHiQELvdEAIKNV 125
                             3.45.8999********************9********8454333222222 PP

>> tr|S4RVL0|S4RVL0_PETMA  NOL1/NOP2/Sun domain family, member 4 OS=Petromyzon marinus OX=7757 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.012      20     134 ..     172     311 ..     166     337 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                             -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--................---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS
                    FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm................aplpgvttiqgditdpetiekikealserkvdl 90 
                             + g++v+Dl+aaPGg +  llq      ++ + D+                   a   gv      +++ + i  +k a ++   d 
  tr|S4RVL0|S4RVL0_PETMA 172 QLGHRVLDLCAAPGGKTLALLQTACC-DQLTSNDVSASrtgrlqrvlrtyvprdAEEAGVPAGGVSVRTRDGIFWLKSAEERGVYDR 257
                             4689****************999865.667777776654544444444443222222444444666666666666666666666777 PP

                             EEE-------S-HHHHHHHH...........HHHHHHHHHHHHHHEEEEEEEEEE CS
                    FtsJ  91 vvsDgapdvsgvhdldeylq...........sqLllaalelalkllkpggtfvlk 134
                             v+ D  p+++ +h+l e  +            qL   +++l l  ++pgg++v  
  tr|S4RVL0|S4RVL0_PETMA 258 VLVDA-PCTNDRHSLHEEENnifsrsrmkerQQLPALQTQLLLLACRPGGVVVYS 311
                             77776.4666667776666667777777766666666666666677777777655 PP

>> tr|S4RDW6|S4RDW6_PETMA  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Petromyzon marinus OX=7757 PE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.9e-06    0.0051      48     110 ..      29      95 ..       4     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.9e-06
                             EEEEEESS--...---TT-EEEE--TTSSSHHHHHHHHHHH..SSEEEEEE-------S-HHHHHHHH CS
                    FtsJ  48 kvvavDlqpm...aplpgvttiqgditdpetiekikealse..rkvdlvvsDgapdvsgvhdldeylq 110
                             k  a Dl      + +  v+++q dit++++++k++e++++     d  v D+   ++g+ +lde+++
  tr|S4RDW6|S4RDW6_PETMA  29 KRRARDLYRAwyrQAPVAVHCFQLDITTKQARDKVREMFNKnaLVSDTRVIDML-VIKGKMELDETIN 95 
                             44455554445544557999*******************994434799999999.9999999999876 PP

>> tr|S4RW29|S4RW29_PETMA  Protein-L-isoaspartate O-methyltransferase OS=Petromyzon marinus OX=7757 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.5e-05     0.037      19      57 ..      99     138 ..      88     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
                             S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S-- CS
                    FtsJ  19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm 57 
                             +++g  ++D+g++ G  + +l++ +g++gkv++vD  q+ 
  tr|S4RW29|S4RW29_PETMA  99 LQEGASALDVGSGSGYLTACLARMIGPRGKVIGVDHiQEL 138
                             458999*****************************85554 PP

>> tr|S4RD16|S4RD16_PETMA  NOP2/Sun RNA methyltransferase family member 2 OS=Petromyzon marinus OX=7757 GN=NSUN2 PE=3 SV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.5e-05     0.078      20      53 ..     145     185 ..     102     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.5e-05
                             -TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEE CS
                    FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavD 53 
                             +p ++v+D +aaPG+ +  l + l+        +g ++a D
  tr|S4RD16|S4RD16_PETMA 145 EPHHKVLDMCAAPGSKTAQLIEMLHSdmstplpDGFIIAND 185
                             34588**********99999888743222222224455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (177 nodes)
Target sequences:                        13539  (5048892 residues searched)
Passed MSV filter:                       311  (0.0229707); expected 270.8 (0.02)
Passed bias filter:                      292  (0.0215673); expected 270.8 (0.02)
Passed Vit filter:                        42  (0.00310215); expected 13.5 (0.001)
Passed Fwd filter:                        13  (0.000960189); expected 0.1 (1e-05)
Initial search space (Z):              13539  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.06
# Mc/sec: 14894.23
//
[ok]