# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.5e-64 214.5 0.0 1e-63 214.3 0.0 1.1 1 tr|S4RR22|S4RR22_PETMA Putative tRNA (cytidine(32)/guanosine
1.4e-36 125.9 0.0 2.1e-36 125.3 0.0 1.3 1 tr|S4RLF4|S4RLF4_PETMA Cap methyltransferase 1 OS=Petromyzon
9.9e-19 67.7 0.2 5.2e-18 65.4 0.1 2.0 2 tr|S4RTG5|S4RTG5_PETMA Cap methyltransferase 2 OS=Petromyzon
4.5e-05 23.2 0.0 0.00012 21.8 0.0 1.7 1 tr|S4RE18|S4RE18_PETMA NOL1/NOP2/Sun domain family, member 6
9e-05 22.3 0.1 0.079 12.7 0.0 2.9 3 tr|S4R4I3|S4R4I3_PETMA Phosphoethanolamine methyltransferase
9.9e-05 22.1 0.1 0.00029 20.6 0.1 1.7 1 tr|S4RYQ5|S4RYQ5_PETMA NOP2 nucleolar protein homolog (yeast
0.0001 22.1 0.1 0.00028 20.6 0.1 1.7 1 tr|S4RYQ4|S4RYQ4_PETMA NOP2 nucleolar protein homolog (yeast
0.0013 18.5 0.1 0.0015 18.3 0.1 1.1 1 tr|S4RMF5|S4RMF5_PETMA HemK methyltransferase family member
0.0033 17.2 0.0 0.011 15.4 0.0 1.8 1 tr|S4R827|S4R827_PETMA Protein-L-isoaspartate (D-aspartate)
0.0036 17.0 0.0 0.012 15.3 0.0 1.8 1 tr|S4RVL0|S4RVL0_PETMA NOL1/NOP2/Sun domain family, member 4
0.0043 16.8 0.1 0.0051 16.5 0.1 1.2 1 tr|S4RDW6|S4RDW6_PETMA NADH dehydrogenase [ubiquinone] 1 alp
------ inclusion threshold ------
0.02 14.6 0.0 0.037 13.8 0.0 1.6 1 tr|S4RW29|S4RW29_PETMA Protein-L-isoaspartate O-methyltransf
0.05 13.3 0.0 0.078 12.7 0.0 1.5 1 tr|S4RD16|S4RD16_PETMA NOP2/Sun RNA methyltransferase family
Domain annotation for each sequence (and alignments):
>> tr|S4RR22|S4RR22_PETMA Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Petromyzon marinus OX=77
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 214.3 0.0 9.8e-67 1e-63 1 177 [] 21 203 .. 21 203 .. 0.96
Alignments for each domain:
== domain 1 score: 214.3 bits; conditional E-value: 9.8e-67
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.........-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl....ga..kgkvvavDlqpmaplpgvttiqgditdpetiekike 81
+r+Rsa+KLl++de+f+lf+ + ++vDl+aaPG+wsqvl+++l g+ ++k+vavDlq maplpgv ++qgdit+ +t+++i +
tr|S4RR22|S4RR22_PETMA 21 WRARSAFKLLQLDEEFNLFQGVSHAVDLCAAPGSWSQVLSRKLrgedGKksDAKIVAVDLQAMAPLPGVIQLQGDITKVSTAQEIIK 107
79*****************************************765522335*********************************** PP
HHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE---------- CS
FtsJ 82 alserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsess 168
++++++ dlvv+Dgapdv+g hd+dey+q+qLllaal++++++lk+ggtfv+kifrg++++ l++qlk fF v+++kP+++ +
tr|S4RR22|S4RR22_PETMA 108 HFEGQPSDLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITSHVLKRGGTFVAKIFRGKDVTLLFSQLKVFFPLVTCAKPNTTLPVVP 194
*************************************************************************************** PP
EEEEEEEEE CS
FtsJ 169 eeflvcrgf 177
e+f+vc+++
tr|S4RR22|S4RR22_PETMA 195 EAFVVCQNY 203
******996 PP
>> tr|S4RLF4|S4RLF4_PETMA Cap methyltransferase 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.3 0.0 2e-39 2.1e-36 2 176 .. 192 407 .. 191 408 .. 0.87
Alignments for each domain:
== domain 1 score: 125.3 bits; conditional E-value: 2e-39
TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--............. CS
FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm............. 57
+R+++K++++d f+ +f+ p ++ + D++a+PGg+s+++l+r ++k ++++l +p+
tr|S4RLF4|S4RLF4_PETMA 192 LNRASVKMANMDCVFDfMFTnPKDKngqplvndkggellyFADVCAGPGGFSEYVLWRRSWHAKGFGLTLrGPNdfkledffaapse 278
58**************333443322477788888888888******************64489*******88889999998886654 PP
..---TT-EEE..E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE CS
FtsJ 58 ..aplpgvtti..qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkif 136
+ + gv+ + gdit+ ++ie++++++ r+v++ ++Dg+++v+g+++l+e+l+ qLll++ +al+++++gg+fv+k+f
tr|S4RLF4|S4RLF4_PETMA 279 mfEAHYGVSGVdgDGDITRSDNIEEFRRFVLCgtegRGVHFLMADGGFSVEGQENLQEILSKQLLLCQALVALSVVRKGGHFVCKTF 365
44444788888*************9996543356669************************************************** PP
-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
FtsJ 137 r.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
+ +++++ ++++ l ++F++v ++kP +sr+++se+++vcrg
tr|S4RLF4|S4RLF4_PETMA 366 DlFTRFSvGVIYLLYRCFSRVCLFKPVTSRPANSERYVVCRG 407
****************************************98 PP
>> tr|S4RTG5|S4RTG5_PETMA Cap methyltransferase 2 OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.4 0.1 5e-21 5.2e-18 24 177 .] 144 327 .. 113 327 .. 0.81
2 ? -0.6 0.0 0.87 9.1e+02 118 157 .. 645 686 .. 628 694 .. 0.81
Alignments for each domain:
== domain 1 score: 65.4 bits; conditional E-value: 5e-21
EEEEES-TT-HHHHHHTTT........-SEEEEEESS--.......---TT-EEE.............E--TTSSSHHHHHHHHHHH CS
FtsJ 24 tvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.......aplpgvtti.............qgditdpetiekikealse 85
+ v+l+ aPG+++ l++ + + k ++a +l+p +++p ++i +gd + ++++ +++
tr|S4RTG5|S4RTG5_PETMA 144 NSVHLCEAPGAFICSLNHYVRThqaacKLCWLATTLNPFhesntceSMIPDARLIlhtaarwcfgaddTGDAMCLANQNGVRPV--- 227
589*************99994434445689*********777777544466666677888888889999999999999999875... PP
SSEEEEEE----........---S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE---- CS
FtsJ 86 rkvdlvvsDgap........dvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPks 162
+ v +D+a+ + g+ +e+ + L+ + + +al+ll+pgg+fvlk+f+ +e+++ ll l + F++v+vvkP++
tr|S4RTG5|S4RTG5_PETMA 228 --CGSVFCDVASvecllrnaCGVGNPGEQEACVAPLVFCETVTALALLAPGGSFVLKLFTlFEHSSaCLLFLLVCTFQEVHVVKPAT 312
..78899999976666664322334555555557**************************98888846666699************* PP
------EEEEEEEEE CS
FtsJ 163 srsesseeflvcrgf 177
s+ ++se ++vc+gf
tr|S4RTG5|S4RTG5_PETMA 313 SKAGNSELYVVCLGF 327
*************98 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.87
HHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEE CS
FtsJ 118 lelalkllkpggtfvlkifr.geete.allkqlkkfFekvsv 157
l+l+++ l++g+++vl + ++++ +++ +l+++F+++s
tr|S4RTG5|S4RTG5_PETMA 645 LQLMFSHLAEGDCLVLPLPAaLTRFSaGIIFALSQCFSRLSF 686
78899999999999988776656666699999*****99876 PP
>> tr|S4RE18|S4RE18_PETMA NOL1/NOP2/Sun domain family, member 6 OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.0 1.2e-07 0.00012 20 149 .. 238 399 .. 230 409 .. 0.65
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 1.2e-07
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---...TT-EEEE--TTSSSHHHHHHHHHHH.......... CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........apl...pgvttiqgditdpetiekikealse.......... 85
+pg +v+D +aaPGg + +++ +g +g ++a+D a + + ++t+++d t+
tr|S4RE18|S4RE18_PETMA 238 RPGLRVLDMCAAPGGKTTHIATLMGDTGEIIALDKTAAkvqkiqnnASRlnlKSIQTFCCDSTQ------------Aiasgphtgkg 312
58999********************99*******988645444443122122344444444333............03333444446 PP
............SSEEEEEE----..........---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHH CS
FtsJ 86 ............rkvdlvvsDgap..........dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr...geeteallk 146
+++d v+ D + +l ++++ L ++ l a++ll+pgg+++ ++ e+ +++
tr|S4RE18|S4RE18_PETMA 313 llwwvghppfpeEYFDRVLLDAPCsalgkrpclgF---PASLRQLQSYaPLQRKLLAAAVALLRPGGVLLYTTCSvasAENERQVAW 396
77777788888888999999975455666653333...3444444443368888899999999**9998866665542444446666 PP
HHG CS
FtsJ 147 qlk 149
+l+
tr|S4RE18|S4RE18_PETMA 397 ALR 399
665 PP
>> tr|S4R4I3|S4R4I3_PETMA Phosphoethanolamine methyltransferase OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.7 0.0 7.6e-05 0.079 22 76 .. 51 111 .. 27 172 .. 0.82
2 ! 6.0 0.0 0.0086 9 19 80 .. 281 348 .. 271 357 .. 0.68
3 ? -2.5 0.0 3.4 3.5e+03 10 32 .. 361 392 .. 356 408 .. 0.70
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 7.6e-05
T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHH CS
FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpeti 76
+ +v++lga+ G ++ l+++ +v avD + + + +++++q+d+t+ +
tr|S4R4I3|S4R4I3_PETMA 51 DAKVLELGAGIGRFTGHLAKQA---RHVTAVDFMQTfldknrelnSDHVNIKFLQADVTQLQFP 111
467******************3...68******666599776555555799999****988755 PP
== domain 2 score: 6.0 bits; conditional E-value: 0.0086
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--......---.TT-EEE.E--TTSSSHHHHHH CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm......apl.pgvtti.qgditdpetiekik 80
++ g++v+D+g++ Gg ++++ ++ v+++Dl +m + + t++ q i d ++++ +
tr|S4R4I3|S4R4I3_PETMA 281 LQAGQKVLDVGCGIGGGNFYMAKAFK--VDVLGMDLsSNMveiameR-AtEDSTLLvQFEISDATKRDFPE 348
35899*******************85..79******54557755421.12222322577776666666555 PP
== domain 3 score: -2.5 bits; conditional E-value: 3.4
HHHHHHH--S-TT-E.........EEEES-TT CS
FtsJ 10 leidekfklfkpgkt.........vvDlgaaP 32
l+i +kf lfk+ + + D +++
tr|S4R4I3|S4R4I3_PETMA 361 LHIADKFALFKRFYRwlkpggkllITDYCCGE 392
67888888887776655556666677777665 PP
>> tr|S4RYQ5|S4RYQ5_PETMA NOP2 nucleolar protein homolog (yeast) OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.1 2.8e-07 0.00029 21 126 .. 185 304 .. 172 339 .. 0.61
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 2.8e-07
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE.E--TTSSSHHHHHHHHHHH..SSEEEEEE----....... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.qgditdpetiekikealse..rkvdlvvsDgap....... 97
++++ +D +aaPGg + +++q + ++g +va D+++ ++ + v + + +t+ + + +al + +++d v+ D
tr|S4RYQ5|S4RYQ5_PETMA 185 ENEKLLDMCAAPGGKTSYAAQLMRNTGAIVANDVNSERLKSVVGNLhRLGVTNSIVCNYDGRALAKvmSGFDRVLLDAPCsgtgiis 271
56779******************999********99755554444444444444444322233333443456666555432222233 PP
...---S-.HHHHHHHHHHHHHHHHHHHHHHEE CS
FtsJ 98 ...dvsgv.hdldeylqsqLllaalelalkllk 126
+v+ ++d ++ ++L ++ l +a+++l+
tr|S4RYQ5|S4RYQ5_PETMA 272 kdpSVKTSkDEKDILRCAHLQKQLLLTAIDCLD 304
322222220333333334666666666555555 PP
>> tr|S4RYQ4|S4RYQ4_PETMA NOP2 nucleolar protein homolog (yeast) OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.1 2.7e-07 0.00028 21 126 .. 194 313 .. 178 347 .. 0.62
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 2.7e-07
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE.E--TTSSSHHHHHHHHHHH..SSEEEEEE----....... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.qgditdpetiekikealse..rkvdlvvsDgap....... 97
++++ +D +aaPGg + +++q + ++g +va D+++ ++ + v + + +t+ + + +al + +++d v+ D
tr|S4RYQ4|S4RYQ4_PETMA 194 ENEKLLDMCAAPGGKTSYAAQLMRNTGAIVANDVNSERLKSVVGNLhRLGVTNSIVCNYDGRALAKvmSGFDRVLLDAPCsgtgiis 280
56779******************999********99755554444444444444444322233333443456666555432222233 PP
...---S-.HHHHHHHHHHHHHHHHHHHHHHEE CS
FtsJ 98 ...dvsgv.hdldeylqsqLllaalelalkllk 126
+v+ ++d ++ ++L ++ l +a+++l+
tr|S4RYQ4|S4RYQ4_PETMA 281 kdpSVKTSkDEKDILRCAHLQKQLLLTAIDCLD 313
322222220333333334666666666555555 PP
>> tr|S4RMF5|S4RMF5_PETMA HemK methyltransferase family member 1 OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.3 0.1 1.5e-06 0.0015 23 130 .. 60 194 .. 34 195 .] 0.77
Alignments for each domain:
== domain 1 score: 18.3 bits; conditional E-value: 1.5e-06
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--TTSSSHHHHHHHHHHH.........SSE CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgditdpetiekikealse.........rkv 88
+v+D+g++ G+ s +l + vavD ++ ++++++q dit + ea++ ++
tr|S4RMF5|S4RMF5_PETMA 60 YRVLDIGCGSGAISLAILSASPL-ASCVAVDKSADavalarenaedlSLQDRCSVVQLDITAVGRAAHATEAVGAlgpfdvlvsNPP 145
46******************765.999*****8888888887775444449*************99999988877856666665666 PP
EEEEE-------S-HHHHHHHH.............HHHHHHHHHHHHHHEEEEEE CS
FtsJ 89 dlvvsDgapdvsgvhdldeylq.............sqLllaalelalkllkpggt 130
+ + D+a ++ + ++L++ l+la +++k +g+
tr|S4RMF5|S4RMF5_PETMA 146 YVFTGDMAALQPEIR------SfedpaalhggedgMDLIKVVLTLAAEVVKDNGS 194
666666663222223......2444455779*********************997 PP
>> tr|S4R827|S4R827_PETMA Protein-L-isoaspartate (D-aspartate) O-methyltransferase OS=Petromyzon marinus OX=7757 PE=4 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.4 0.0 1.1e-05 0.011 16 63 .. 77 125 .. 67 186 .. 0.62
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 1.1e-05
H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--..---TT- CS
FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm..aplpgv 63
+ lf +g v+D+g++ G + ++++ +g +gkv+++D q+ + +++v
tr|S4R827|S4R827_PETMA 77 H-LF-EGASVLDVGSGSGYLTACIARMVGSSGKVFGIDHiQELvdEAIKNV 125
3.45.8999********************9********8454333222222 PP
>> tr|S4RVL0|S4RVL0_PETMA NOL1/NOP2/Sun domain family, member 4 OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.3 0.0 1.1e-05 0.012 20 134 .. 172 311 .. 166 337 .. 0.66
Alignments for each domain:
== domain 1 score: 15.3 bits; conditional E-value: 1.1e-05
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--................---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm................aplpgvttiqgditdpetiekikealserkvdl 90
+ g++v+Dl+aaPGg + llq ++ + D+ a gv +++ + i +k a ++ d
tr|S4RVL0|S4RVL0_PETMA 172 QLGHRVLDLCAAPGGKTLALLQTACC-DQLTSNDVSASrtgrlqrvlrtyvprdAEEAGVPAGGVSVRTRDGIFWLKSAEERGVYDR 257
4689****************999865.667777776654544444444443222222444444666666666666666666666777 PP
EEE-------S-HHHHHHHH...........HHHHHHHHHHHHHHEEEEEEEEEE CS
FtsJ 91 vvsDgapdvsgvhdldeylq...........sqLllaalelalkllkpggtfvlk 134
v+ D p+++ +h+l e + qL +++l l ++pgg++v
tr|S4RVL0|S4RVL0_PETMA 258 VLVDA-PCTNDRHSLHEEENnifsrsrmkerQQLPALQTQLLLLACRPGGVVVYS 311
77776.4666667776666667777777766666666666666677777777655 PP
>> tr|S4RDW6|S4RDW6_PETMA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Petromyzon marinus OX=7757 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.1 4.9e-06 0.0051 48 110 .. 29 95 .. 4 111 .. 0.77
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 4.9e-06
EEEEEESS--...---TT-EEEE--TTSSSHHHHHHHHHHH..SSEEEEEE-------S-HHHHHHHH CS
FtsJ 48 kvvavDlqpm...aplpgvttiqgditdpetiekikealse..rkvdlvvsDgapdvsgvhdldeylq 110
k a Dl + + v+++q dit++++++k++e++++ d v D+ ++g+ +lde+++
tr|S4RDW6|S4RDW6_PETMA 29 KRRARDLYRAwyrQAPVAVHCFQLDITTKQARDKVREMFNKnaLVSDTRVIDML-VIKGKMELDETIN 95
44455554445544557999*******************994434799999999.9999999999876 PP
>> tr|S4RW29|S4RW29_PETMA Protein-L-isoaspartate O-methyltransferase OS=Petromyzon marinus OX=7757 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.8 0.0 3.5e-05 0.037 19 57 .. 99 138 .. 88 213 .. 0.84
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 3.5e-05
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S-- CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm 57
+++g ++D+g++ G + +l++ +g++gkv++vD q+
tr|S4RW29|S4RW29_PETMA 99 LQEGASALDVGSGSGYLTACLARMIGPRGKVIGVDHiQEL 138
458999*****************************85554 PP
>> tr|S4RD16|S4RD16_PETMA NOP2/Sun RNA methyltransferase family member 2 OS=Petromyzon marinus OX=7757 GN=NSUN2 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.7 0.0 7.5e-05 0.078 20 53 .. 145 185 .. 102 266 .. 0.67
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 7.5e-05
-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavD 53
+p ++v+D +aaPG+ + l + l+ +g ++a D
tr|S4RD16|S4RD16_PETMA 145 EPHHKVLDMCAAPGSKTAQLIEMLHSdmstplpDGFIIAND 185
34588**********99999888743222222224455544 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 13539 (5048892 residues searched)
Passed MSV filter: 311 (0.0229707); expected 270.8 (0.02)
Passed bias filter: 292 (0.0215673); expected 270.8 (0.02)
Passed Vit filter: 42 (0.00310215); expected 13.5 (0.001)
Passed Fwd filter: 13 (0.000960189); expected 0.1 (1e-05)
Initial search space (Z): 13539 [actual number of targets]
Domain search space (domZ): 13 [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.06
# Mc/sec: 14894.23
//
[ok]