# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-66 224.3 0.2 2.3e-66 223.9 0.2 1.2 1 tr|I7MGM4|I7MGM4_TETTS Putative tRNA (cytidine(32)/guanosine
6.9e-55 186.5 0.0 1.2e-54 185.7 0.0 1.4 1 tr|Q23MN4|Q23MN4_TETTS Putative rRNA methyltransferase OS=Te
1.9e-48 165.5 0.0 3.1e-48 164.8 0.0 1.4 1 tr|I7M3R1|I7M3R1_TETTS Ribosomal RNA large subunit methyltra
3.3e-06 27.9 0.0 5.2e-06 27.3 0.0 1.3 1 tr|I7M7E8|I7M7E8_TETTS Ribosomal RNA large subunit methyltra
9e-06 26.5 0.5 9e-06 26.5 0.5 2.0 2 tr|Q22E68|Q22E68_TETTS Ribosomal RNA large subunit methyltra
1.8e-05 25.5 0.1 6.2e-05 23.8 0.0 1.9 2 tr|Q22N15|Q22N15_TETTS NOL1/NOP2/sun family protein OS=Tetra
0.00023 21.9 0.1 0.00055 20.7 0.1 1.5 1 tr|Q22HF4|Q22HF4_TETTS NOL1/NOP2/sun family RNA methylase, p
0.0011 19.7 1.7 0.04 14.6 0.0 2.8 3 tr|I7M457|I7M457_TETTS NOL1/NOP2/sun family protein OS=Tetra
0.0066 17.2 0.0 0.014 16.1 0.0 1.5 1 tr|I7MKV3|I7MKV3_TETTS Arginine N-methyltransferase OS=Tetra
------ inclusion threshold ------
0.019 15.7 0.1 0.075 13.7 0.0 2.1 2 tr|I7MLK2|I7MLK2_TETTS Transmembrane protein, putative OS=Te
0.023 15.4 1.2 0.15 12.7 0.4 2.2 2 tr|I7LZY6|I7LZY6_TETTS DEAD-box ATP-dependent RNA helicase O
0.057 14.1 0.0 0.15 12.7 0.0 1.8 1 tr|I7MAM9|I7MAM9_TETTS NOL1/NOP2/sun family protein OS=Tetra
0.15 12.8 0.1 0.25 12.0 0.1 1.4 1 tr|I7MFA3|I7MFA3_TETTS rRNA 2'-O-methyltransferase fibrillar
0.16 12.7 0.0 0.25 12.0 0.0 1.4 1 tr|I7M264|I7M264_TETTS Short-chain dehydrogenase/reductase f
0.23 12.1 0.0 0.45 11.2 0.0 1.5 1 tr|I7MAE9|I7MAE9_TETTS UbiE/COQ5 family methyltransferase OS
Domain annotation for each sequence (and alignments):
>> tr|I7MGM4|I7MGM4_TETTS Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Tetrahymena thermophila
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 223.9 0.2 1.3e-69 2.3e-66 1 177 [] 21 207 .. 21 207 .. 0.96
Alignments for each domain:
== domain 1 score: 223.9 bits; conditional E-value: 1.3e-69
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.............-SEEEEEESS-----TT-EEEE--TTSSSHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl..........gakgkvvavDlqpmaplpgvttiqgditdpetie 77
+r+RsayKLl+ide f++f++ ++v+Dl+aaPG+wsqv++++l g++ +++++Dlq+map+++v ++qgdit++et +
tr|I7MGM4|I7MGM4_TETTS 21 FRARSAYKLLQIDEVFGIFENAERVIDLCAAPGSWSQVVSKKLtekglfkdsnGEDVRIISIDLQEMAPIDNVVQLQGDITKKETVD 107
79*****************************************6666665554335******************************* PP
HHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE------ CS
FtsJ 78 kikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssr 164
+i+ ++++k++lv+ Dgapdv+g hd+d+ylqsqL+ aal+++ ++lk+gg+fv+kif+g+++++l++q+k fF++v+vvkPkssr
tr|I7MGM4|I7MGM4_TETTS 108 EILHKFKGNKANLVIDDGAPDVTGFHDIDQYLQSQLMVAALNICNETLKKGGHFVAKIFKGTDIKFLYSQFKLFFKSVYVVKPKSSR 194
*************************************************************************************** PP
----EEEEEEEEE CS
FtsJ 165 sesseeflvcrgf 177
+s e flvc+++
tr|I7MGM4|I7MGM4_TETTS 195 ASSVENFLVCLQY 207
**********985 PP
>> tr|Q23MN4|Q23MN4_TETTS Putative rRNA methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 185.7 0.0 6.7e-58 1.2e-54 1 177 [] 24 200 .. 24 200 .. 0.99
Alignments for each domain:
== domain 1 score: 185.7 bits; conditional E-value: 6.7e-58
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87
yrsR+++KL++i++k++++++ ++v+Dl+aaPGgw qv+++ + ++ +++Dl p++p+pgv+t+ dit p t +++k+ l++ k
tr|Q23MN4|Q23MN4_TETTS 24 YRSRACFKLIQINKKYGFLEKANAVIDLCAAPGGWLQVAAKFCPVTCTKIGLDLVPIKPIPGVKTYVQDITAPVTYQLLKRELKGGK 110
9****************99***********************9889***************************************** PP
EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS
FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174
+d+v+ Dgap+v ++++d+++q++L laal+la++ l++ggtfv+k+fr+++ +al+ ++kfF+k++ kPk+sr +s+e+f+vc
tr|Q23MN4|Q23MN4_TETTS 111 ADVVLNDGAPNVGANWQKDAFNQIELTLAALKLAVNFLRRGGTFVTKVFRSKDYNALIWVCNKFFRKIEANKPKASRFTSAEIFIVC 197
*************************************************************************************** PP
EEE CS
FtsJ 175 rgf 177
++f
tr|Q23MN4|Q23MN4_TETTS 198 TDF 200
987 PP
>> tr|I7M3R1|I7M3R1_TETTS Ribosomal RNA large subunit methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=31
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 164.8 0.0 1.7e-51 3.1e-48 1 177 [] 59 238 .. 59 238 .. 0.97
Alignments for each domain:
== domain 1 score: 164.8 bits; conditional E-value: 1.7e-51
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT......-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga...kgkvvavDlqpmaplpgvttiqgditdpetiekikeals 84
yrsR++yKL+ei+e++k+fk+g++v++lg+aPGgw+qv+++ ++ k+ v+a+D m+p++g ++qgdi+d++t+ i e+++
tr|I7M3R1|I7M3R1_TETTS 59 YRSRASYKLIEIQERYKIFKQGQKVLELGSAPGGWTQVAVEFTKSnekKPTVLAIDRDFMDPVQGAVFYQGDINDKKTQVYIPEFFK 145
9**************************************9998444447************************************** PP
HSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEE CS
FtsJ 85 erkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseef 171
++vd+v+sD+ap+ sg d+d++l +L ++ +++k lk ggt+v+k+++g+ +++++ k +F+++ vkP++sr +sse +
tr|I7M3R1|I7M3R1_TETTS 146 LEPVDIVISDMAPNFSGDLDQDHLLIQDLNNMTIDVCTKNLKIGGTVVMKTLNGTLEKDVFRMYKIYFKEFLRVKPRASRARSSELY 232
*************************************************************************************** PP
EEEEEE CS
FtsJ 172 lvcrgf 177
++ +g+
tr|I7M3R1|I7M3R1_TETTS 233 YLGKGY 238
*99885 PP
>> tr|I7M7E8|I7M7E8_TETTS Ribosomal RNA large subunit methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=31
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.0 2.9e-09 5.2e-06 3 95 .. 158 246 .. 157 287 .. 0.81
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 2.9e-09
SHHHHHHHHHHHHH--S-.TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----....TT-EEEE--TTSSSHHHHHHHHHH CS
FtsJ 3 sRsayKLleidekfklfk.pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl....pgvttiqgditdpetiekikeals 84
+R+ +KL e+ + +++ v++lg++PGgw+ v+ q g +k++++D +p +++++iq d ++ + +
tr|I7M7E8|I7M7E8_TETTS 158 NRAYLKLWEVFTIINKYPqNNQFVIELGSSPGGWTWVIQQF-G--AKILSCDKSLLDPKllkyDKLQFIQQDAFKILPDNFKE---- 237
799****9998888755448888***************999.6..69******99976667889********99887766433.... PP
HSSEEEEEE-- CS
FtsJ 85 erkvdlvvsDg 95
++d +sD+
tr|I7M7E8|I7M7E8_TETTS 238 --EIDWLLSDL 246
..366666665 PP
>> tr|Q22E68|Q22E68_TETTS Ribosomal RNA large subunit methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=31
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.5 0.5 5e-09 9e-06 85 177 .] 263 366 .. 85 366 .. 0.81
2 ? -2.2 0.0 3.2 5.7e+03 123 154 .. 399 447 .. 379 451 .. 0.58
Alignments for each domain:
== domain 1 score: 26.5 bits; conditional E-value: 5e-09
H.........SSEEEEEE---.----S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH..HHHHHHGGGEEEEEEE- CS
FtsJ 85 e.........rkvdlvvsDga.pdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeete..allkqlkkfFekvsvvk 159
e +++dl + + p+v+g ++++ q +++ + + ++ll+ + ++v+k+++ ++ +l+ ++k F++v + k
tr|Q22E68|Q22E68_TETTS 263 EqaqeqdfsfEGFDLYLGLRScPNVEGYLQQEKQCQKRMIFDLTMI-CNLLADQQNCVIKFYHTFSIRtlMILYLFSKIFQTVVMSK 348
24555555557777777664449****9999999998998876666.89**************55555436666699********** PP
---------EEEEEEEEE CS
FtsJ 160 Pkssrsesseeflvcrgf 177
P++s +s+ ++l c++f
tr|Q22E68|Q22E68_TETTS 349 PRTSSFASNARYLHCTNF 366
***************998 PP
== domain 2 score: -2.2 bits; conditional E-value: 3.2
HHEEEEEEEEEEEE-................STTHHHHHHH.HGGGEEE CS
FtsJ 123 kllkpggtfvlkifr................geeteallkq.lkkfFek 154
+ k g+f+ k+++ +++ ++++kq lk+ F++
tr|Q22E68|Q22E68_TETTS 399 QDTKFSGNFIEKFLQnllrqqidyfecdevvNRKYADIVKQeLKSIFSE 447
4445567788887776666665555555555556666666666666665 PP
>> tr|Q22N15|Q22N15_TETTS NOL1/NOP2/sun family protein OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_00
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.8 0.0 3.4e-08 6.2e-05 20 138 .. 250 384 .. 184 408 .. 0.78
2 ? -2.4 0.0 3.7 6.7e+03 122 157 .. 615 653 .. 600 658 .. 0.72
Alignments for each domain:
== domain 1 score: 23.8 bits; conditional E-value: 3.4e-08
-TT-EEEEES-TT-HHHHHHTTT.....-SEEEEEESS--.---TT-EEEE--TT.SSSHHHHHHHHHHHSSEEEEEE-------S- CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga..kgkvvavDlqpm.aplpgvttiqgdit.dpetiekikealserkvdlvvsDgapdvsgv 102
+p+++++D +aaPG+ ++ +l+ + + ++ ++a D+ + a + ++++ + t t + ++ + +++d v++D+ + g+
tr|Q22N15|Q22N15_TETTS 250 QPNEKILDMCAAPGSKTKQMLESMMKgnESLLFANDISKKrAFMLAFHVLKLNATcAVLTSNDCTKYPKVEQFDKVLCDVPCSGDGT 336
36788******************955447********77735559999998888514445555555555689********8655665 PP
HHHHHHHH...........HHHHHHHHHHHHHHEEEEEEEEEEEE-.S CS
FtsJ 103 hdldeylq...........sqLllaalelalkllkpggtfvlkifr.g 138
+++++ +L l+ l al l+k+gg++v ++ +
tr|Q22N15|Q22N15_TETTS 337 IRKQKLILkrwssklgknlHCLQLSLLLRALYLVKKGGSVVYSTCSlN 384
444444446899999998768888888889999********8877753 PP
== domain 2 score: -2.4 bits; conditional E-value: 3.7
HHHEEEEEEEEEEEE-.STTHH.HHHHH.HGGGEEEEEE CS
FtsJ 122 lkllkpggtfvlkifr.geete.allkq.lkkfFekvsv 157
l+++++g + +k+ + + ++ +++++ l+ fF+k++
tr|Q22N15|Q22N15_TETTS 615 LSIVNCGLKVFTKVKDvTHPIKyRIIQEgLNIFFDKITH 653
556666666666666676666668999999999998765 PP
>> tr|Q22HF4|Q22HF4_TETTS NOL1/NOP2/sun family RNA methylase, putative OS=Tetrahymena thermophila (strain SB210) OX=312
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.7 0.1 3e-07 0.00055 21 152 .. 274 422 .. 257 433 .. 0.68
Alignments for each domain:
== domain 1 score: 20.7 bits; conditional E-value: 3e-07
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...---TT-EEE..E--TTSSSHHHHHHHHHHH..........SSEEEEE CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvtti..qgditdpetiekikealse..........rkvdlvv 92
p+++++D +aaPGg + +++q ++++g+++a D++ a++ +v+ + + i + +k+++ +++ + ++
tr|Q22HF4|Q22HF4_TETTS 274 PNEKILDMAAAPGGKTTYIAQLMKNTGVLFANDVKADrnkALIFNVQRMgiNNCIVTNYDGRKLNKVIHNcdrvlldapcTGLGIIA 360
7789*******************999********99966544466666643222333333344554443333344445444555555 PP
E-------S-.HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHH.HGGGE CS
FtsJ 93 sDgapdvsgv.hdldeylqsqLllaalelalkllkpggtfvlkifr..geeteallkq.lkkfF 152
D + v+ + + +d ++++L + + a++++k+gg +v ++ +e e+++ lk+ F
tr|Q22HF4|Q22HF4_TETTS 361 RDPS--VKATkQLIDVQKHAHLQRELILSAIDCCKKGGYVVYSTCSvtVQENESVVDYaLKNRF 422
5555..5555155666677899999999999*********988777653333344444366665 PP
>> tr|I7M457|I7M457_TETTS NOL1/NOP2/sun family protein OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_00
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 2.2e-05 0.04 21 96 .. 132 210 .. 107 266 .. 0.72
2 ? 3.5 0.1 0.055 1e+02 111 160 .. 381 433 .. 287 442 .. 0.75
3 ? -2.2 0.0 3.1 5.6e+03 121 139 .. 456 474 .. 448 477 .. 0.75
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 2.2e-05
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvttiqgditdpetiekikealserkvdlvvsDga 96
+g++v+Dl+++PG ++ +ga+gk ++vD+++ ++++ v+ ++ d + ++ +e+++d v+ D
tr|I7M457|I7M457_TETTS 132 KGEKVLDLCCCPGMKLCNIADIIGAEGKAFGVDINETrlnTCRSIVKKYKLDHIIKLELADGTTYNKESQFDRVLVDAE 210
7899*******************************99665333444444444322222222333334445666666654 PP
== domain 2 score: 3.5 bits; conditional E-value: 0.055
HHHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHH.HGGGEEEEEEE-- CS
FtsJ 111 sqLllaalelalkllkpggtfvlkifr..geeteallkq.lkkfFekvsvvkP 160
++L ++ l+ ++kl+k+gg +v ++ + + e++++ l++f ++v+ + P
tr|I7M457|I7M457_TETTS 381 VDLQKKLLTNGFKLCKEGGYIVYSTCSfaRNQNEDVVEWfLNEFKDQVESIHP 433
5799999999***********97766654555556666659999999998888 PP
== domain 3 score: -2.2 bits; conditional E-value: 3.1
HHHHEEEEEEEEEEEE-ST CS
FtsJ 121 alkllkpggtfvlkifrge 139
+ k gg fv+k+++++
tr|I7M457|I7M457_TETTS 456 DPFVSKSGGMFVSKFIKKQ 474
5567799*******98855 PP
>> tr|I7MKV3|I7MKV3_TETTS Arginine N-methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_00
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.1 0.0 7.7e-06 0.014 11 92 .. 117 198 .. 109 227 .. 0.73
Alignments for each domain:
== domain 1 score: 16.1 bits; conditional E-value: 7.7e-06
HHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.....SSEEEEE CS
FtsJ 11 eidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.....rkvdlvv 92
i++ +lf +gk v+D+g+++G s ++++ ga ++v++vD ++ ++ + + + + d+ t i+ ++e +kvd+++
tr|I7MKV3|I7MKV3_TETTS 117 SILDNKNLF-EGKIVLDIGCGTGILSIFAAKA-GA-KHVYGVDNANIILHAKAIVKNNNLADKITL--IQGKMEEvelpvEKVDIII 198
567777877.899*******************.88.99******9996665555555555444332..3332333334445566655 PP
>> tr|I7MLK2|I7MLK2_TETTS Transmembrane protein, putative OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.0 4.1 7.4e+03 68 109 .. 181 222 .. 139 250 .. 0.71
2 ? 13.7 0.0 4.2e-05 0.075 4 144 .. 327 528 .. 324 548 .. 0.58
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 4.1
--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHHHH CS
FtsJ 68 gditdpetiekikealserkvdlvvsDgapdvsgvhdldeyl 109
g+i +++ + +++ +k++ v+ D+ +d++ ++ l +y+
tr|I7MLK2|I7MLK2_TETTS 181 GNISYERNSDIQWRLCTLHKINGVIKDIQFDTQKQNFLINYI 222
566666666655555555777777777777777766665554 PP
== domain 2 score: 13.7 bits; conditional E-value: 4.2e-05
HHHHHHHHHHHHH--S-TT-E....................EEEES-TT-HHHHHHTTT............................ CS
FtsJ 4 RsayKLleidekfklfkpgkt....................vvDlgaaPGgwsqvllqrl........................... 43
Rs +K ++i + + + + + vvD+ Gg++q +
tr|I7MLK2|I7MLK2_TETTS 327 RSLMKTIKISNNQDEAQLQ-KinlpnfsyidkdyvqvlsiqVVDILEEKGGFTQKFIAIVlkgnsedvfiecelyktkfdqnreeip 412
7777777776666633222.2234555555556666666679999999999999884444343333333333333333333333333 PP
..............-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH...............................SS CS
FtsJ 44 ............gakgkvvavDlqpmaplpgvttiqgditdpetiekikealse...............................rk 87
+ ++ +++ + s+
tr|I7MLK2|I7MLK2_TETTS 413 kidntrfffnreE-AQTLFSKNV-----------------------------SQymrnidifennlfphvhtayskmrnkfvvniLD 469
3333233332221.122233332.............................22222222333333333333333344444444433 PP
EEEEEE---.----S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH.HH CS
FtsJ 88 vdlvvsDga.pdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeete.al 144
l++ D + p++ g+ d++ ++ s+L++ +++ ++++g+f++ + +++e+ ++
tr|I7MLK2|I7MLK2_TETTS 470 QFLILVDFSiPSMIGIIDIEPTNYSKLIKEGFKIKKMHFSENGNFLCILTQDQEQHnQI 528
459999*9989************************************999966655243 PP
>> tr|I7LZY6|I7LZY6_TETTS DEAD-box ATP-dependent RNA helicase OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.9 0.0 0.36 6.5e+02 73 138 .. 189 280 .. 156 301 .. 0.57
2 ? 12.7 0.4 8.6e-05 0.15 66 168 .. 355 460 .. 319 464 .. 0.82
Alignments for each domain:
== domain 1 score: 0.9 bits; conditional E-value: 0.36
SSHHHHHHHHHHH..............SSEEEEEE----..........---S-HHHHHHHHHHHHHHHHHHHHHHEE.EEEEEEEE CS
FtsJ 73 petiekikealse..............rkvdlvvsDgap..........dvsgvhdldeylqsqLllaalelalkllk.pggtfvlk 134
p++ ++++++ ++ ++dl + D +++ vh+ ++ ++ q +l ++ l++ + +g f+ k
tr|I7LZY6|I7LZY6_TETTS 189 PSQLDQMLKL-KDqtnpyqvdpkfiviDEFDLLLGDTNIarstisilnrFCN-VHNNPQNINRQFILTGASFPLRINNeKGTQFIDK 273
4444444432.22355566556666566677777776664454444443333.3444444444555555555555544256679999 PP
EE-...S CS
FtsJ 135 ifr...g 138
+f+ +
tr|I7LZY6|I7LZY6_TETTS 274 VFKrpiC 280
9995552 PP
== domain 2 score: 12.7 bits; conditional E-value: 8.6e-05
EE--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHH...HHEEEEEEEEEEEE-STTHHHHHHHHG CS
FtsJ 66 iqgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelal...kllkpggtfvlkifrgeeteallkqlk 149
++++ ++++ i+++ ++ +++ lv D+a+ +++d+++q + +l a+++ ++++ g + v+ f +e++e+l+++++
tr|I7LZY6|I7LZY6_TETTS 355 FHANLNTEQRIDTLANFDEGKVRVLVSTDLASRGLDFQNVDHVIQFDFALDAVSFLHrvgRTCRMGRNGVVTSFVRENDEFLYEKVQ 441
4889999999999997555555556667999666666***************9995522357889999999**************** PP
GGEEEEEEE---------- CS
FtsJ 150 kfFekvsvvkPkssrsess 168
k+ + + + P +sr++s
tr|I7LZY6|I7LZY6_TETTS 442 KLICNHQRIDPIISRKRSL 460
****************996 PP
>> tr|I7MAM9|I7MAM9_TETTS NOL1/NOP2/sun family protein OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTHERM_00
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.7 0.0 8.4e-05 0.15 24 57 .. 251 299 .. 212 419 .. 0.68
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 8.4e-05
E.........EEEES-TT-HHHHHHTTT.........-SEEEEEESS-- CS
FtsJ 24 t.........vvDlgaaPGgwsqvllqrl......gakgkvvavDlqpm 57
++D +aaPG+ + ll+ + ++kg vva D+ +
tr|I7MAM9|I7MAM9_TETTS 251 LlldvkpddiIFDMCAAPGSKTAQLLELMytqggiNTKGAVVANDVDQK 299
0444444444*******************66655433799*****9544 PP
>> tr|I7MFA3|I7MFA3_TETTS rRNA 2'-O-methyltransferase fibrillarin OS=Tetrahymena thermophila (strain SB210) OX=312017 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.1 0.00014 0.25 17 97 .. 135 218 .. 119 244 .. 0.85
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00014
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE- CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlvvsD 94
+ +kpg +v+ lg a G ++ +g++g+v+av + +++ +v i gd ++p+ + + vd+v +D
tr|I7MFA3|I7MFA3_TETTS 135 H-IKPGSKVLYLGGASGTTVSHVADIVGPTGVVYAVEFSHRsgrdlvnmaKKRTNVVPIIGDARKPQEYRFLVG-----MVDVVFAD 215
4.689999**********99999999999999999999888788777665566899999***********8885.....59****** PP
--- CS
FtsJ 95 gap 97
+a
tr|I7MFA3|I7MFA3_TETTS 216 VAQ 218
993 PP
>> tr|I7M264|I7M264_TETTS Short-chain dehydrogenase/reductase family protein OS=Tetrahymena thermophila (strain SB210)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 0.00014 0.25 77 111 .. 83 117 .. 20 151 .. 0.81
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.00014
HHHHHHHHHSSEEEEEE-------S-HHHHHHHHH CS
FtsJ 77 ekikealserkvdlvvsDgapdvsgvhdldeylqs 111
++ ke +++ v+l ++D++ + s ++ +dey+q+
tr|I7M264|I7M264_TETTS 83 NLQKEISNNKNVQLHLCDMSDFSSIRKFVDEYNQL 117
22223333499*********999999*******96 PP
>> tr|I7MAE9|I7MAE9_TETTS UbiE/COQ5 family methyltransferase OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=TTH
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 0.0 0.00025 0.45 20 80 .. 50 119 .. 36 178 .. 0.85
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 0.00025
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHH CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekik 80
k+ k+++D+g ++G + r+ ++ +v ++D+ + +++++v++ +++ d+e+++++k
tr|I7MAE9|I7MAE9_TETTS 50 KNFKRILDVGVGTGHPLYSIIDRIPKSVQVTGIDIDTNyipaakkifSKHSNVEIKYMNFYDMEKEKTLK 119
47799*******************999********77778988665555689999999999999888776 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 26971 (16912921 residues searched)
Passed MSV filter: 1401 (0.0519447); expected 539.4 (0.02)
Passed bias filter: 662 (0.0245449); expected 539.4 (0.02)
Passed Vit filter: 48 (0.00177969); expected 27.0 (0.001)
Passed Fwd filter: 15 (0.000556153); expected 0.3 (1e-05)
Initial search space (Z): 26971 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.26u 0.01s 00:00:00.27 Elapsed: 00:00:00.11
# Mc/sec: 27214.43
//
[ok]