# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-69 233.1 0.1 7.1e-69 232.9 0.1 1.0 1 tr|A2F7C6|A2F7C6_TRIVA Putative tRNA (cytidine(32)/guanosine
1e-68 232.4 0.1 1.2e-68 232.2 0.1 1.0 1 tr|A2DQE1|A2DQE1_TRIVA Putative tRNA (cytidine(32)/guanosine
1.8e-57 195.7 0.0 3.7e-57 194.8 0.0 1.5 1 tr|A2EDQ1|A2EDQ1_TRIVA FtsJ-like methyltransferase family pr
4.6e-54 184.6 0.0 5.6e-54 184.4 0.0 1.1 1 tr|A2F3X6|A2F3X6_TRIVA FtsJ-like methyltransferase family pr
4.3e-36 126.1 0.0 6.2e-36 125.6 0.0 1.2 1 tr|A2G3Y9|A2G3Y9_TRIVA FtsJ-like methyltransferase family pr
0.00026 22.6 0.1 0.0005 21.7 0.1 1.4 1 tr|A2F7I7|A2F7I7_TRIVA NOL1/NOP2/sun family putative RNA met
0.0013 20.4 0.0 0.0028 19.2 0.0 1.5 1 tr|A2FNB4|A2FNB4_TRIVA NOL1/NOP2/sun family protein OS=Trich
0.0036 18.9 0.2 0.011 17.3 0.0 1.8 2 tr|A2EFA7|A2EFA7_TRIVA NOL1/NOP2/sun family protein OS=Trich
0.0078 17.8 0.0 0.012 17.1 0.0 1.4 1 tr|A2FUH6|A2FUH6_TRIVA NOL1/NOP2/sun family protein OS=Trich
------ inclusion threshold ------
0.012 17.2 0.0 0.016 16.7 0.0 1.3 1 tr|A2DME7|A2DME7_TRIVA Arginine N-methyltransferase, putativ
0.015 16.9 0.0 0.019 16.5 0.0 1.3 1 tr|A2E549|A2E549_TRIVA Protein arginine N-methyltransferase-
0.023 16.3 0.0 0.028 16.0 0.0 1.2 1 tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas
0.094 14.3 0.0 0.2 13.2 0.0 1.4 1 tr|A2FK25|A2FK25_TRIVA Uncharacterized protein OS=Trichomona
0.15 13.6 0.0 0.24 13.0 0.0 1.4 1 tr|A2FK19|A2FK19_TRIVA Methyltransferase, putative OS=Tricho
0.18 13.4 0.0 0.25 12.9 0.0 1.2 1 tr|A2FPG1|A2FPG1_TRIVA Protein arginine N-methyltransferase,
0.18 13.4 0.0 0.3 12.6 0.0 1.4 1 tr|A2DVE6|A2DVE6_TRIVA Methyltransferase, putative OS=Tricho
0.18 13.4 0.0 0.3 12.6 0.0 1.4 1 tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas
Domain annotation for each sequence (and alignments):
>> tr|A2F7C6|A2F7C6_TRIVA Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Trichomonas vaginalis OX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 232.9 0.1 2.4e-72 7.1e-69 1 177 [] 20 198 .. 20 198 .. 0.98
Alignments for each domain:
== domain 1 score: 232.9 bits; conditional E-value: 2.4e-72
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.....-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga..kgkvvavDlqpmaplpgvttiqgditdpetiekikealse 85
+r+Rsa+KL+++ ++f+lf+++++vvDl+aaPG+wsqv++qrl + ++ +vavDlqpmap+pgv +i+gdit++et++++ +a+++
tr|A2F7C6|A2F7C6_TRIVA 20 WRARSAFKLIQVADHFRLFDNVTRVVDLCAAPGSWSQVCAQRLSKvpNSAIVAVDLQPMAPIPGVIQIRGDITSKETAQQVIDAMNG 106
79*****************************************7777799************************************* PP
SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEE CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseefl 172
+k+dlv+sDgapdv+g hdldey+qsqL+ +a+++a+ +l++ggtf++kif+g+++++l++ l+ fFe+v+ +kP++sr +s e+f+
tr|A2F7C6|A2F7C6_TRIVA 107 KKADLVISDGAPDVTGLHDLDEYMQSQLVFSAFNIACFMLREGGTFMAKIFTGRDIQDLYSSLSPFFETVTAMKPRASRVASLESFV 193
*************************************************************************************** PP
EEEEE CS
FtsJ 173 vcrgf 177
vc+gf
tr|A2F7C6|A2F7C6_TRIVA 194 VCQGF 198
***98 PP
>> tr|A2DQE1|A2DQE1_TRIVA Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Trichomonas vaginalis OX
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 232.2 0.1 4.1e-72 1.2e-68 1 177 [] 20 198 .. 20 198 .. 0.98
Alignments for each domain:
== domain 1 score: 232.2 bits; conditional E-value: 4.1e-72
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.....-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga..kgkvvavDlqpmaplpgvttiqgditdpetiekikealse 85
+r+Rsa+KL+++ ++f+lf+++++vvDl+aaPG+wsqv++q+l + ++ +vavDlqpmap+pgv +i+gdit++et++++ +a+++
tr|A2DQE1|A2DQE1_TRIVA 20 WRARSAFKLIQVADHFRLFDNVTRVVDLCAAPGSWSQVCAQKLSKvpNSAIVAVDLQPMAPIPGVIQIRGDITSKETAQQVIDAMNG 106
79*****************************************7667799************************************* PP
SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEE CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseefl 172
+k+dlv+sDgapdv+g hdldey+qsqL+ +a+++a+ +l++ggtf++kif+g+++++l++ l+ fFe+v+ +kP++sr +s e+f+
tr|A2DQE1|A2DQE1_TRIVA 107 KKADLVISDGAPDVTGLHDLDEYMQSQLVFSAFNIACFMLREGGTFMAKIFTGRDIQDLYSSLSPFFETVTAMKPRASRVASLESFV 193
*************************************************************************************** PP
EEEEE CS
FtsJ 173 vcrgf 177
vc+gf
tr|A2DQE1|A2DQE1_TRIVA 194 VCQGF 198
***98 PP
>> tr|A2EDQ1|A2EDQ1_TRIVA FtsJ-like methyltransferase family protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_309050 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.8 0.0 1.2e-60 3.7e-57 1 177 [] 25 201 .. 25 201 .. 0.99
Alignments for each domain:
== domain 1 score: 194.8 bits; conditional E-value: 1.2e-60
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87
yrsR+a+KL++++++f++++ + ++Dl+aaPGgwsqv+++ + +++++a+Dl p++ +p+v +qgdi+ p+t+++++++++++k
tr|A2EDQ1|A2EDQ1_TRIVA 25 YRSRAAFKLIQLNQQFNFLNDAHVCLDLCAAPGGWSQVAAKYMPVGAQIIAIDLAPIKDIPRVIALQGDILLPKTHQRVRKLIQGQK 111
9****************99************************999***************************************** PP
EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS
FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174
+d+v+ Dgap+v +++d+ +q++L+la++++++ l++gg+fv+k+fr+e+ ++ll l++fFekv +kPk+sr +s+e f+v+
tr|A2EDQ1|A2EDQ1_TRIVA 112 ADVVLNDGAPNVGAAWVTDSSNQLELCLASVKFSTLFLRKGGSFVTKVFRSEHYNSLLWVLSQFFEKVVPTKPKASRDSSAELFVVA 198
*************************************************************************************** PP
EEE CS
FtsJ 175 rgf 177
+g+
tr|A2EDQ1|A2EDQ1_TRIVA 199 LGY 201
986 PP
>> tr|A2F3X6|A2F3X6_TRIVA FtsJ-like methyltransferase family protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_290980 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 184.4 0.0 1.9e-57 5.6e-54 1 177 [] 20 198 .. 20 198 .. 0.98
Alignments for each domain:
== domain 1 score: 184.4 bits; conditional E-value: 1.9e-57
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.....-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga..kgkvvavDlqpmaplpgvttiqgditdpetiekikealse 85
+r+RsayKL+++ ++++++k ++vvDl++aPG+wsqv+++ + + + k++++Dl+ + p++gvt ++gditd +t+e++ +l++
tr|A2F3X6|A2F3X6_TRIVA 20 WRARSAYKLIQVESEMHFLKDSTRVVDLCSAPGSWSQVCAKLMPEtdARKIISIDLRRIVPIDGVTELRGDITDVKTAENVISLLDG 106
79***************99***********************9665459************************************** PP
SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEE CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseefl 172
+k+d v++Dgapd+ + ++dey+q ++++a+l++a+ +l++ggtfv+kifr ++ +ll+ + +fF+k++++kP+++r +s e+f+
tr|A2F3X6|A2F3X6_TRIVA 107 NKADAVLADGAPDTIIRIEFDEYVQHNIVKASLTIATMVLREGGTFVSKIFRTKSLPKLLAIFGCFFSKITMCKPRACRLSSVESFI 193
*************************************************************************************** PP
EEEEE CS
FtsJ 173 vcrgf 177
vc+gf
tr|A2F3X6|A2F3X6_TRIVA 194 VCQGF 198
***98 PP
>> tr|A2G3Y9|A2G3Y9_TRIVA FtsJ-like methyltransferase family protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_116350 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 125.6 0.0 2.1e-39 6.2e-36 1 176 [. 262 473 .. 262 474 .. 0.87
Alignments for each domain:
== domain 1 score: 125.6 bits; conditional E-value: 2.1e-39
TTSHHHHHHHHHHHHH--S-TT-E................EEEES-TT-HHHHHHTTT...-SEEEEEES.S--.........---T CS
FtsJ 1 yrsRsayKLleidekfklfkpgkt................vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm.........aplp 61
+++R+a+K++++d+ f+ f++ + D++a+PGg++++l +rl ++k ++++l + + +p
tr|A2G3Y9|A2G3Y9_TRIVA 262 FQNRAAMKMANLDAIFN-FTNSPEfpnlapncgkledyfyFADICAGPGGFTDYLYWRLDGRAKGFGMTLaGDHdwaqpemflSTIP 347
579**************.7655333455566666777788*******************8789*******54448887666555557 PP
T-EEE.....E--TTSSSHHH....HHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.S CS
FtsJ 62 gvtti.....qgditdpetie....kikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.g 138
+ t + +g+i++p++ie +ik+ ++++ v+lv++Dg+ v g ++ +e l+ +L+l+++ +al++l++gg+f++k+f+
tr|A2G3Y9|A2G3Y9_TRIVA 348 NFTKVygpegNGNIFNPDNIEdlynTIKTETNNKMVQLVTADGGTAVDGEENAQEQLHKRLVLCQFLTALRVLRKGGSFLCKTFDvY 434
777779***************55555555566699***************************************************9 PP
TTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
FtsJ 139 eete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
++++ +ll+ l ++F+++ ++kP +sr+++se+++v +g
tr|A2G3Y9|A2G3Y9_TRIVA 435 TDFSvELLYLLAQCFNRFCIIKPYTSRPANSERYVVGLG 473
99999*******************************986 PP
>> tr|A2F7I7|A2F7I7_TRIVA NOL1/NOP2/sun family putative RNA methylase containing protein OS=Trichomonas vaginalis OX=57
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.7 0.1 1.7e-07 0.0005 21 103 .. 222 307 .. 213 372 .. 0.72
Alignments for each domain:
== domain 1 score: 21.7 bits; conditional E-value: 1.7e-07
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHHHHHHHHH..SSEEEEEE-------S-H CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiekikealse..rkvdlvvsDgapdvsgvh 103
pg++ +D +aaPGg + ++q ++++g+++a D++ + ++++ +t+ + + +a+ ++d v++D + +gv
tr|A2F7I7|A2F7I7_TRIVA 222 PGMRTLDMCAAPGGKTTHMAQLMKNQGVIIANDINRTRAQaLIANIHRLGVTNTIVVNYDGRAFPTvmGGFDAVMCDAPCSGTGVI 307
8999*******************999********987333133333344444444444333333224457*******865445544 PP
>> tr|A2FNB4|A2FNB4_TRIVA NOL1/NOP2/sun family protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_427320 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 9.6e-07 0.0028 20 151 .. 153 307 .. 127 318 .. 0.63
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 9.6e-07
-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH......SSEEEEEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrl.ga......kgkvvavDlqpmaplpgvttiqgditdpetiekikealse......rkvdlvvs 93
+p++ v+D +aaPG+ + + + + ++ +g vva ++ +++t+ g ++ ++++ i + ++ k+d +v+
tr|A2FNB4|A2FNB4_TRIVA 153 QPDHFVLDMCAAPGSKTTQVIEMMlKKangkplSGIVVANEVNAK----RCHTLAGRLQRLDNRQIIVTSHEGqqfpelIKFDRIVC 235
47788**********876666666422333233466666666655....44444444444444444443222233333358****** PP
----..........---S-HHHHHHHHH.HHHHHHHHHHHHHEEEEEEEEEEEE-..STTHHHHHHH.HGGG CS
FtsJ 94 Dgap..........dvsgvhdldeylqs.qLllaalelalkllkpggtfvlkifr..geeteallkq.lkkf 151
D+ d +++l e +++ L +a l+ al+llk gg +v ++ e+ea+++ lk++
tr|A2FNB4|A2FNB4_TRIVA 236 DVPCsgdgtlrkspDAGPNWKLSEGQNLhVLQRAILTKALRLLKVGGRCVYSTCSlnPIEDEAVISSvLKEC 307
*964455555555555555666666666256666667788**********8888764333336666555555 PP
>> tr|A2EFA7|A2EFA7_TRIVA NOL1/NOP2/sun family protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_079770 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.0 2.4 7.1e+03 133 155 .. 50 96 .. 28 117 .. 0.64
2 ! 17.3 0.0 3.9e-06 0.011 19 138 .. 141 275 .. 126 292 .. 0.74
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 2.4
EEEE-.STTHHHHHHHHGGGEEE.......................E CS
FtsJ 133 lkifr.geeteallkqlkkfFek.......................v 155
+ i + +++++l +q++k+Fe+ v
tr|A2EFA7|A2EFA7_TRIVA 50 FRIAKdTPHFDDLCQQTEKHFENltskgfkcekktslppefgavyqV 96
44444577888888888888887555554445555555555555555 PP
== domain 2 score: 17.3 bits; conditional E-value: 3.9e-06
S-TT-EEEEES-TT-HHHHHHTTT....-SEEEEEES..S--.---TT-EEE.E--TTSSSHHHHHHHHHHHSSEEEEEE------- CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlga.kgkvvavDl..qpm.aplpgvtti.qgditdpetiekikealserkvdlvvsDgapdvs 100
+++++ ++D +a+PG+ + +++ l + +g v+a D+ + + ++l +v+ i + ++ ++ + ++ + + k+d +++D+ +
tr|A2EFA7|A2EFA7_TRIVA 141 VSKDDVILDMCASPGSKTSQIVESLSQgNGLVIANDIdlKRCyTLLHQVQEIgTSKVLVTCNAAQYLPDF-GIKFDKILADVPCSGD 226
4577889*****************97756*****888424445555888888766676666666667667.459*******976444 PP
S-HHHHHHHH...........HHHHHHHHHHHHHHEEEEEEEEEEEE-S CS
FtsJ 101 gvhdldeylq...........sqLllaalelalkllkpggtfvlkifrg 138
g+ +d+ ++ L +a l+ +l+llk ggt+v ++
tr|A2EFA7|A2EFA7_TRIVA 227 GTVRKDSNVAsswkpnnstamHGLQRAILKRGLELLKVGGTLVYSTCSM 275
44333333334577777777559*******************9887764 PP
>> tr|A2FUH6|A2FUH6_TRIVA NOL1/NOP2/sun family protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_380890 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.1 0.0 4.2e-06 0.012 24 102 .. 141 226 .. 66 283 .. 0.71
Alignments for each domain:
== domain 1 score: 17.1 bits; conditional E-value: 4.2e-06
E......EEEES-TT-HHHHHHTTT...-SEEEEEESS--..---....TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE----- CS
FtsJ 24 t......vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl....pgvttiqgditdpetiekikealserkvdlvvsDgapd 98
v+D +aaPG+ + l + l +g vva D +p+ ++v t+++ + + +++++ + e+k+d v++D+
tr|A2FUH6|A2FUH6_TRIVA 141 DvhgsmgVLDTCAAPGSKTTQLIEMLDGDGYVVANDADVKrlHPMvhqlQRVGTYRTLVINFDAQKLPD--F-EEKFDRVLCDVP-- 222
0333444*******************778*****99865533444444467777788887776666444..3.359*******95.. PP
--S- CS
FtsJ 99 vsgv 102
++g
tr|A2FUH6|A2FUH6_TRIVA 223 CTGD 226
4444 PP
>> tr|A2DME7|A2DME7_TRIVA Arginine N-methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_045760 PE=3 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 16.7 0.0 5.6e-06 0.016 13 77 .. 34 94 .. 4 162 .. 0.72
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 5.6e-06
HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHH CS
FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetie 77
d+k + f ++k vvD+ga++G s +++q ga +kv+a+ ++a++ + ++ + ti
tr|A2DME7|A2DME7_TRIVA 34 DNKNE-F-KDKIVVDVGAGTGILSLFAAQA-GA-KKVYAIECTEIANIAEKIIKDNNFENIITIV 94
33333.4.4567******************.88.9**********66654444444444333332 PP
>> tr|A2E549|A2E549_TRIVA Protein arginine N-methyltransferase-related protein OS=Trichomonas vaginalis OX=5722 GN=TVAG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 16.5 0.0 6.6e-06 0.019 17 84 .. 39 114 .. 17 210 .. 0.81
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 6.6e-06
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---.TT-EEEE--TTSSSHHHHHHHHHH CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........apl.pgvttiqgditdpetiekikeals 84
+lf ++k v+D+g+++G s +++ ga ++v+avD + ++l +++t++qg i + + e++ +s
tr|A2E549|A2E549_TRIVA 39 SLF-KDKVVLDVGCGTGILSLFVASC-GA-SRVYAVDNSTIietakkidkdNNLeNKITFLQGKIEELQIPERVDVIIS 114
444.6789***************999.88.********99999998887653446999999****99998887765444 PP
>> tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_380100 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 16.0 0.0 9.5e-06 0.028 9 97 .. 137 228 .. 129 282 .. 0.84
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 9.5e-06
HHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHS CS
FtsJ 9 LleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealser 86
Ll +kf+ +kpg v+ lgaa G ++ +g++g+v+av + + +p++ i d ++p++ +++ ++
tr|A2DXE8|A2DXE8_TRIVA 137 LLVGIDKFG-IKPGASVLYLGAASGTTVSHVSDIVGPTGRVYAVEFSHRvgrelcnlaKSRPNIVPIIEDARHPQKYRMLVPM---- 218
6666799**.99**********************************9988999998877779****************99974.... PP
SEEEEEE---- CS
FtsJ 87 kvdlvvsDgap 97
vd + +D+a
tr|A2DXE8|A2DXE8_TRIVA 219 -VDYMFADVAQ 228
.7888888873 PP
>> tr|A2FK25|A2FK25_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_480150 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.2 0.0 6.7e-05 0.2 31 127 .. 573 670 .. 556 697 .. 0.82
Alignments for each domain:
== domain 1 score: 13.2 bits; conditional E-value: 6.7e-05
TT-HHHHHHTTT.....-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHHHHHH.HHH CS
FtsJ 31 aPGgwsqvllqrlga..kgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylqs.qLl 114
a ++ q++l+ + ++++ ++ l+ +++ p v +++gdi+d i i +l++ d+ + Dg+ ++ ++ + ++++ q++
tr|A2FK25|A2FK25_TRIVA 573 AKQSFKQIVLTSNSKgnSTVITGISLGIIKNNPVVGLVKGDILDDVEIS-ITYLLENPSYDVLIIDGG-AIQYLTQSQYAIKMaQMI 657
5557888887776333369**************************9998.66689999**********.888888887777776888 PP
HHHHHHHHHHEEE CS
FtsJ 115 laalelalkllkp 127
+++ ++ l+ +p
tr|A2FK25|A2FK25_TRIVA 658 QQTKTIVLQKADP 670
8877776665555 PP
>> tr|A2FK19|A2FK19_TRIVA Methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_346300 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.0 8.1e-05 0.24 21 102 .. 64 156 .. 38 230 .. 0.78
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 8.1e-05
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S-----..TT-EEEE--TTSSSHHHHHHHHHHH........SSEEEEEE--- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpmapl..pgvttiqgditdpetiekikealse........rkvdlvvsDga 96
+g+t +Dlg+++G + v++ g++g+v+++D+ q+ + + + ++ i+d + ie k ++++ + +d+vvs +
tr|A2FK19|A2FK19_TRIVA 64 EGTTSIDLGSGTGRDCFVISALAGKTGNVIGIDMtQEQIDVanEAIAYHKEHILDASPIEFRKGFIEDlraanipdNFADVVVSNCV 150
57899*****************9999********666655555667777***********777776668888888888******999 PP
----S- CS
FtsJ 97 pdvsgv 102
+ s +
tr|A2FK19|A2FK19_TRIVA 151 INLSPQ 156
888764 PP
>> tr|A2FPG1|A2FPG1_TRIVA Protein arginine N-methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_19970
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.0 8.4e-05 0.25 17 81 .. 46 118 .. 33 185 .. 0.76
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 8.4e-05
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---....TT-EEEE--TTSSSHHHHHHH CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........apl....pgvttiqgditdpetiekike 81
+lf +gk ++D+g+++G s ++++ ga ++v+av ++ + + +++t+iqg i + + ek+
tr|A2FPG1|A2FPG1_TRIVA 46 SLF-KGKIILDVGCGTGILSMFAAKA-GA-KHVYAVEKSSIidyareiiD-IngfgDRITVIQGTIEEIDLPEKVDV 118
455.8999******************.88.99******999888765541.23457799999998877666665554 PP
>> tr|A2DVE6|A2DVE6_TRIVA Methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_209040 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 0.0001 0.3 22 102 .. 62 153 .. 41 226 .. 0.74
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.0001
T-EEEEES-TT-HHHHHHTTT...-SEEEEEES.S--....---TT-EEEE--TTSSSHHHHHHHHHHH........SSEEEEEE-- CS
FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm....aplpgvttiqgditdpetiekikealse........rkvdlvvsDg 95
g+ vDlg+++G + v++ g++g+v++vD+ q+ + + + ++ i + + ie k ++++ + +d+vvs
tr|A2DVE6|A2DVE6_TRIVA 62 GTISVDLGSGTGRDCFVISALAGKTGHVIGVDMtQEQidvaN--EAIAYHKEHIPEASPIEFRKGFIEDlhtanipdNFADVVVSNC 146
5678*****************9999********666554430..4444446666666666644444444555555556699999999 PP
-----S- CS
FtsJ 96 apdvsgv 102
+ + s +
tr|A2DVE6|A2DVE6_TRIVA 147 VINLSPQ 153
9888765 PP
>> tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_282140 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 0.0001 0.3 1 96 [. 141 239 .. 141 289 .. 0.85
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 0.0001
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiek 78
yrs+ + Ll +e+f+ + pg +v+ lgaa G ++ +g++g+v+av + +++p++ i d + p++ ++
tr|A2E9S9|A2E9S9_TRIVA 141 YRSKIGAALLVGLEHFG-ICPGAKVLYLGAASGTTVSHVSDIVGPTGRVYAVEFSHRvardlvslaKLRPNIVPIINDARYPNKYRM 226
56666666777889999.66************************9999***9998888998888866669*************9999 PP
HHHHHHHSSEEEEEE--- CS
FtsJ 79 ikealserkvdlvvsDga 96
+ + vd + +D+a
tr|A2E9S9|A2E9S9_TRIVA 227 LVP-----MVDYMFADVA 239
997.....4788888887 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 1640 (0.0326758); expected 1003.8 (0.02)
Passed bias filter: 1358 (0.0270572); expected 1003.8 (0.02)
Passed Vit filter: 248 (0.00494122); expected 50.2 (0.001)
Passed Fwd filter: 17 (0.000338713); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 17 [number of targets reported over threshold]
# CPU time: 0.30u 0.01s 00:00:00.31 Elapsed: 00:00:00.12
# Mc/sec: 25156.42
//
[ok]