# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-69 232.0 0.1 4.7e-69 231.4 0.1 1.3 1 tr|B3SDC9|B3SDC9_TRIAD Putative tRNA (cytidine(32)/guanosine
6.2e-50 169.1 0.0 7.6e-50 168.8 0.0 1.1 1 tr|B3RPL8|B3RPL8_TRIAD Uncharacterized protein OS=Trichoplax
6.8e-48 162.5 0.5 1.6e-47 161.3 0.1 1.8 2 tr|B3S6H5|B3S6H5_TRIAD Putative rRNA methyltransferase OS=Tr
5.5e-35 120.4 0.0 1e-34 119.6 0.0 1.5 1 tr|B3RKR0|B3RKR0_TRIAD Uncharacterized protein OS=Trichoplax
7.5e-26 90.7 0.0 1.6e-20 73.3 0.0 2.6 2 tr|B3RPD9|B3RPD9_TRIAD Uncharacterized protein OS=Trichoplax
9.8e-23 80.5 0.1 1e-22 80.5 0.1 1.0 1 tr|B3SF25|B3SF25_TRIAD Uncharacterized protein OS=Trichoplax
4.4e-05 23.0 0.1 8.4e-05 22.1 0.1 1.5 1 tr|B3RZP1|B3RZP1_TRIAD Uncharacterized protein OS=Trichoplax
0.00069 19.1 0.0 0.0014 18.2 0.0 1.4 1 tr|B3S3E8|B3S3E8_TRIAD Uncharacterized protein (Fragment) OS
0.0048 16.4 0.0 0.012 15.1 0.0 1.7 2 tr|B3RLW0|B3RLW0_TRIAD Uncharacterized protein OS=Trichoplax
0.0068 15.9 0.0 0.066 12.7 0.0 2.3 2 tr|B3RJG2|B3RJG2_TRIAD Uncharacterized protein OS=Trichoplax
------ inclusion threshold ------
0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 tr|B3SAR8|B3SAR8_TRIAD Uncharacterized protein OS=Trichoplax
0.014 14.9 0.0 0.029 13.9 0.0 1.5 1 tr|B3S8A4|B3S8A4_TRIAD Uncharacterized protein OS=Trichoplax
0.016 14.7 0.0 0.016 14.7 0.0 1.0 1 tr|B3SF37|B3SF37_TRIAD Uncharacterized protein (Fragment) OS
0.017 14.6 0.0 0.027 13.9 0.0 1.3 1 tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax
0.023 14.2 0.0 0.034 13.6 0.0 1.2 1 tr|B3RJ30|B3RJ30_TRIAD Uncharacterized protein OS=Trichoplax
0.024 14.1 0.0 0.057 12.9 0.0 1.7 1 tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax
Domain annotation for each sequence (and alignments):
>> tr|B3SDC9|B3SDC9_TRIAD Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Trichoplax adhaerens OX=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 231.4 0.1 6.5e-72 4.7e-69 1 177 [] 21 207 .. 21 207 .. 0.96
Alignments for each domain:
== domain 1 score: 231.4 bits; conditional E-value: 6.5e-72
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.............-SEEEEEESS-----TT-EEEE--TTSSSHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl..........gakgkvvavDlqpmaplpgvttiqgditdpetie 77
+r+Rsa+KLl+ide+f +fk ++++vDl+aaPG+wsqvl+++l + k k+vavDlq mapl+gv +iqgdit+ +t++
tr|B3SDC9|B3SDC9_TRIAD 21 WRARSAFKLLQIDEEFTIFKGVTRAVDLCAAPGSWSQVLSKKLrnqenlseaeQSKVKIVAVDLQAMAPLDGVIQIQGDITSVSTAN 107
79*****************************************77666665432269****************************** PP
HHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE------ CS
FtsJ 78 kikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssr 164
+i ++++++k+dlvv+Dgapdv+g+hdldey q+qLllaal+++ ++lk ggtf++kifrg++++ l++ql+ fF +v++ kP+ssr
tr|B3SDC9|B3SDC9_TRIAD 108 RIIDYFEGEKADLVVCDGAPDVTGQHDLDEYFQAQLLLAALNITNHVLKSGGTFIAKIFRGKDVSLLYSQLRVFFPNVTISKPRSSR 194
*************************************************************************************** PP
----EEEEEEEEE CS
FtsJ 165 sesseeflvcrgf 177
++s e+f+vcr++
tr|B3SDC9|B3SDC9_TRIAD 195 NSSIEAFVVCRNY 207
***********96 PP
>> tr|B3RPL8|B3RPL8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53586 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 168.8 0.0 1e-52 7.6e-50 1 176 [. 67 243 .. 67 244 .. 0.96
Alignments for each domain:
== domain 1 score: 168.8 bits; conditional E-value: 1e-52
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHHHHHHHHHS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiekikealser 86
yrsRsa+KLle+d+kfk+fk+g+ v+D+ga+PG+w+qv+l ++g++g v+avD++ m+ + + + + ++d+ p+t+ i+++l ++
tr|B3RPL8|B3RPL8_TRIAD 67 YRSRSAFKLLEMDKKFKIFKKGDIVIDIGASPGSWTQVALDKTGKRGLVMAVDIRGMKSVgEAMIFDHMDFGVPSTHTFIQNMLVNS 153
9*******************************************9***************5555555******************** PP
SEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEE CS
FtsJ 87 kvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflv 173
k+d+++sD++p+v g ++d+ + +l+al+++++ l +gtf++k+f+g++ + lk+ +++++ +kP++srses+e +++
tr|B3RPL8|B3RPL8_TRIAD 154 KADVIMSDMSPNVAGSPKFDHQAIMTQALCALKFTFANLVYNGTFICKMFHGSDEGLFKDMLKQNYHRINEFKPAASRSESNEFYYI 240
***************************************************9988877777************************** PP
EEE CS
FtsJ 174 crg 176
cr
tr|B3RPL8|B3RPL8_TRIAD 241 CRH 243
*96 PP
>> tr|B3S6H5|B3S6H5_TRIAD Putative rRNA methyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_59807 PE=3 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 161.3 0.1 2.2e-50 1.6e-47 1 161 [. 24 184 .. 24 186 .. 0.99
2 ? -3.4 0.0 8 5.7e+03 69 110 .. 205 259 .. 200 266 .. 0.65
Alignments for each domain:
== domain 1 score: 161.3 bits; conditional E-value: 2.2e-50
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87
yr+Rsa+KL++++ kf++++ + vDl+aaPGgw qv+++ + ++ +v+vDl ++p+p+v t++gdit+ + +++ik+ l+ k
tr|B3S6H5|B3S6H5_TRIAD 24 YRARSAFKLIQLNRKFQFLETSRVLVDLCAAPGGWLQVASRFMPISSLIVGVDLVTIKPIPNVITLTGDITTDACKQAIKKELHTWK 110
9****************999**********************9779***************************************** PP
EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE--- CS
FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPk 161
+d v++Dgap+v +++d++ q+qL l+al+la++llk+gg+f++k+fr+++ +l+ ++++F+kv+ +kP+
tr|B3S6H5|B3S6H5_TRIAD 111 ADSVLHDGAPNVGQAWVQDAFSQAQLTLSALRLACQLLKRGGCFITKVFRSKDYYSLMWVFQQLFKKVHATKPQ 184
*************************************************************************7 PP
== domain 2 score: -3.4 bits; conditional E-value: 8
-TTSSSHHHHHHHHHHH............SSEEEEEE---.----S-HHHHHHHH CS
FtsJ 69 ditdpetiekikealse............rkvdlvvsDga.pdvsgvhdldeylq 110
di ++++++ki+ ++se +k l +s + +++ + ld++ +
tr|B3S6H5|B3S6H5_TRIAD 205 DIETETKQNKINLMFSEkrkdrnragypdNKHTLFTSTPVtDFITSENYLDHLAS 259
8888888888888887766666666666655555555533245666666666665 PP
>> tr|B3RKR0|B3RKR0_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_51728 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 119.6 0.0 1.4e-37 1e-34 2 177 .] 196 412 .. 195 412 .. 0.88
Alignments for each domain:
== domain 1 score: 119.6 bits; conditional E-value: 1.4e-37
TSHHHHHHHHHHHHH-.-S-TT-E..............EEEES-TT-HHHHHHTTT...-SEEEEEESS--................ CS
FtsJ 2 rsRsayKLleidekfk.lfkpgkt..............vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm................ 57
+R+a+K++++d +k +f++ + + D++a+PGg+++++l++ ++k ++++l+
tr|B3RKR0|B3RKR0_TRIAD 196 LNRAAMKMANLDYVYKyIFTNPRDdkgnekirsldilyFADICAGPGGFTEYVLWKRRWHAKGFGITLKDPknasdfkltdflagtp 282
68**************6666332235667788888888******************6447999999996665888888888887777 PP
...---TT-EEE..E--TTSSSHHHHHHHHHHH...SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE CS
FtsJ 58 ...aplpgvtti..qgditdpetiekikealse...rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkif 136
+p gv+ + gd+t+ e+ +++ e++ +v++ ++Dg+++v+g+++++e+l+ qL+l+++ +a+++l++gg+fv+k+f
tr|B3RKR0|B3RKR0_TRIAD 283 etfEPYYGVNGVngDGDVTRTENLRAFAEFVRSsseGGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLCAISVLREGGNFVCKLF 369
6656778999999999*********9997665566688************************************************* PP
-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 137 r.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+ ++ ++ +ll+ + + F+++s+vkP +sr+++se+++vc+g+
tr|B3RKR0|B3RKR0_TRIAD 370 DiFTPFSvGLLYLFYRIFRRISLVKPLTSRPANSERYIVCEGY 412
**999999********************************986 PP
>> tr|B3RPD9|B3RPD9_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53500 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 73.3 0.0 2.2e-23 1.6e-20 4 177 .] 97 313 .. 94 313 .. 0.84
2 ! 14.4 0.1 2.7e-05 0.019 77 154 .. 617 693 .. 552 719 .. 0.80
Alignments for each domain:
== domain 1 score: 73.3 bits; conditional E-value: 2.2e-23
HHHHHHHHHHHHH--S-TT-E................EEEES-TT-HHHHHHTTT........-SEEEEEESS--............ CS
FtsJ 4 RsayKLleidekfklfkpgkt................vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm............ 57
+++ K +ei+++ + +++ + ++l+ +PG+++ ++ l+ ++++a++l+p+
tr|B3RPD9|B3RPD9_TRIAD 97 QAWAKFYEILHRCN-IDQRLNlqqwsddldlsqiplsSLHLCEGPGAFMTSFNHYLKShyphlPWQWLAMTLNPYyegnkdgstitd 182
78999999999999.6644334556667777777777*******************66444445***********998888765554 PP
.---TT-EEE.............E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEE CS
FtsJ 58 .aplpgvtti.............qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpgg 129
++ i g+i++ ++ + e ls+ + lv++Dg+ d+s + ++e++ s +l + + +al++l ++g
tr|B3RPD9|B3RPD9_TRIAD 183 nRL------IsktlshwnfgrdnSGNILHRHNMTFLVESLSQwPSIRLVTADGSIDCSDRPGQQEAIVSPILYCETLTALRILTKDG 263
311......133445567779*9***********98888888688****************************************** PP
EEEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 130 tfvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+ vlk+f+ +++ + l++ l ++F++v+ +kP+ s+s++se++++c g+
tr|B3RPD9|B3RPD9_TRIAD 264 VYVLKMFTsFQHRSiCLIYLLLNVFQEVKAIKPSCSKSGNSEVYIICIGY 313
********97777779999999*************************875 PP
== domain 2 score: 14.4 bits; conditional E-value: 2.7e-05
HHHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEE CS
FtsJ 77 ekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFek 154
+ i+e++ + vd+v +D p + ++ + +L+l+ + la+k+l+ +g+++l + + ++++ ++++ l fF+k
tr|B3RPD9|B3RPD9_TRIAD 617 RYIQETF--KAVDIVFADFHPESIK-ERASQTSHNKLILSEVLLACKVLAMNGHLILTVGDlLSRFQcSVVYMLHVFFNK 693
3444444..67*********76655.7777777789********************999887666666777777777765 PP
>> tr|B3SF25|B3SF25_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_34847 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 80.5 0.1 1.4e-25 1e-22 86 175 .. 4 93 .. 1 95 [. 0.96
Alignments for each domain:
== domain 1 score: 80.5 bits; conditional E-value: 1.4e-25
SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEE CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseefl 172
+++++++sD+ap++sg+++l +++ ++L+++ + ++ + l+++g++++k+f+g + ++++++l+k+F++v+ +kP++s ++sse+f+
tr|B3SF25|B3SF25_TRIAD 4 NQCNVILSDMAPNTSGTRSLNHINIMNLAESVFDFSQQFLSKNGHMIIKLFEGNKNKEFYNKLRKHFKNVHFFKPEASYKDSSEIFI 90
6899*********************************************************************************** PP
EEE CS
FtsJ 173 vcr 175
v +
tr|B3SF25|B3SF25_TRIAD 91 VGL 93
975 PP
>> tr|B3RZP1|B3RZP1_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_26585 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.1 0.1 1.2e-07 8.4e-05 20 111 .. 160 254 .. 143 311 .. 0.70
Alignments for each domain:
== domain 1 score: 22.1 bits; conditional E-value: 1.2e-07
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.......SSEEEEEE------ CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.......rkvdlvvsDgapdv 99
+p+++v+D ++aPGg + +++ ++++g++va D+++ ++++ ++++i + + ++i ++ ++d v+ D +
tr|B3RZP1|B3RZP1_TRIAD 160 QPNEKVLDMCSAPGGKTTYIAALMKNTGMIVANDVNK----ERCKALTANIHRLGVVNTIVCSENGrqfpkivGGFDRVLLDAPCSG 242
47899*******************999********99....5666666666666666655533333444445545777777776666 PP
-S-HHHHHHHHH CS
FtsJ 100 sgvhdldeylqs 111
+gv ++d+ ++s
tr|B3RZP1|B3RZP1_TRIAD 243 TGVISKDASVKS 254
666666666663 PP
>> tr|B3S3E8|B3S3E8_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_28123 PE=3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.0 1.9e-06 0.0014 20 134 .. 202 341 .. 186 361 .. 0.73
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 1.9e-06
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---TT-EEEE--TTSSSHHHHHHHHHHH...........SSEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvttiqgditdpetiekikealse...........rkvd 89
++g+t++D ++aPGg + +++ +++kg ++a+D + ++ +++++ + ++ + +++ + ++ + +d
tr|B3S3E8|B3S3E8_TRIAD 202 HEGDTILDMCSAPGGKATHIATLMKNKGTIIALDKSKSklhkikSNAERLNLSCIEVFAFDSTKAVADICQCqeglrcppfalESFD 288
48999*******************999********9995554432336777778888888777777765544667888888888899 PP
EEEE-------S-HHHHHHHH..........HHHHHHHHHHHHHHEEEEEEEEEE CS
FtsJ 90 lvvsDgapdvsgvhdldeylq..........sqLllaalelalkllkpggtfvlk 134
++ D +sg+ + + + s+ ++ l+ a++llk gg++v
tr|B3S3E8|B3S3E8_TRIAD 289 RILLDPP--CSGMGQRPCLAYkmsakelrsySCYQRKLLSQAFQLLKVGGILVYC 341
9999854..5555444444444466666666677777888888889999998844 PP
>> tr|B3RLW0|B3RLW0_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_49708 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.1 0.0 1.7e-05 0.012 16 58 .. 35 83 .. 28 162 .. 0.78
2 ? -2.3 0.0 3.7 2.7e+03 29 42 .. 251 264 .. 216 301 .. 0.71
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 1.7e-05
H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........- CS
FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........a 58
+lf +gktv+D+g+++G + ++++ ga +kv+++D + a
tr|B3RLW0|B3RLW0_TRIAD 35 KHLF-RGKTVLDIGCGTGILCMFAAKA-GA-AKVIGIDCSGIieqaeaivkA 83
3455.99********************.88.9******97765655444332 PP
== domain 2 score: -2.3 bits; conditional E-value: 3.7
S-TT-HHHHHHTTT CS
FtsJ 29 gaaPGgwsqvllqr 42
g+++G +sq+ ++
tr|B3RLW0|B3RLW0_TRIAD 251 GFSTGPYSQYTHWK 264
66677777776655 PP
>> tr|B3RJG2|B3RJG2_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_19981 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.7 0.0 9.2e-05 0.066 20 142 .. 159 313 .. 122 333 .. 0.66
2 ? 0.4 0.0 0.56 4e+02 31 77 .. 403 450 .. 386 516 .. 0.84
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 9.2e-05
-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---TT-EEE..E--TTSSSHHHHHHHHHHH... CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........aplpgvtti..qgditdpetiekikealse... 85
+p + v+D +aaPG+ + l + l++ +g ++a D + + l+ ++ + d ++ +i k+ +s+
tr|B3RJG2|B3RJG2_TRIAD 159 QPHHYVLDMCAAPGSKTAQLIEFLHQdsskiipDGLIIANDADNKrcymlvhqsKRLNSPCFMitNYDASTMPNIYISKDGISKnip 245
36688***************9999665554444599999999666577777664333444444346666666666666665555555 PP
SSEEEEEE-------S-HHHHHHHH.............HHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH CS
FtsJ 86 rkvdlvvsDgapdvsgvhdldeylq.............sqLllaalelalkllkpggtfvlkifrgeete 142
d +++D+ +sg +l + + +L l+ l +++ll+++g++v ++ + +e
tr|B3RJG2|B3RJG2_TRIAD 246 IVYDRILCDVP--CSGDGTLRKNIMlwkrwnqnnalslHCLQLRILIRGVELLARDGILVYSTCSFNPIE 313
55899999986..334322222222234444444443347777777778889999999888777744443 PP
== domain 2 score: 0.4 bits; conditional E-value: 0.56
TT-HHHHHHTTT....-SEEEEEESS-----TT-EEEE--TTSSSHHH CS
FtsJ 31 aPGgwsqvllqrlga.kgkvvavDlqpmaplpgvttiqgditdpetie 77
+Gg+ +lq++ + ++ + +q ++++p v++ + d+t + ++
tr|B3RJG2|B3RJG2_TRIAD 403 NTGGFFVAVLQKVDHlTWLSKSKSVQAITQIPEVKSKTEDVTVDDPAK 450
589999999999976567777888899999999999999998766555 PP
>> tr|B3SAR8|B3SAR8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_61356 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.9 0.0 2e-05 0.014 23 108 .. 46 123 .. 13 180 .. 0.64
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 2e-05
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE..E--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHH CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti..qgditdpetiekikealserkvdlvvsDgapdvsgvhdlde 107
+ +vD++++PG +q l + + ++v+++D + + ++i + ++ + +t + + ++++ vdlv++ a lde
tr|B3SAR8|B3SAR8_TRIAD 46 NLAVDVACGPGLCTQPLGKYF---KQVIGLDYSHAQIT-EAKIInqTHNV-QFQTGSAYELPCDDNSVDLVTCAQALH-----CLDE 122
339*****************8...57******997655.33333324444.4444444554556899******98843.....3333 PP
H CS
FtsJ 108 y 108
tr|B3SAR8|B3SAR8_TRIAD 123 E 123
3 PP
>> tr|B3S8A4|B3S8A4_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_60467 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.9 0.0 4e-05 0.029 17 93 .. 25 99 .. 11 117 .. 0.74
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 4e-05
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSS.SHHH.HHHHHHHHSSEEEEEE CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdp.etie.kikealserkvdlvvs 93
+ + ++k v+D+ga++G s ++++ ga kv+av +a + + + +d+ ++i+ ++++ +kvd++vs
tr|B3S8A4|B3S8A4_TRIAD 25 R-I-RNKVVLDVGAGTGILSHFCVEA-GA-RKVYAVEASAIAEQAKKVALANNAQDKiSVINdLVENIELPEKVDVIVS 99
3.2.5678******************.88.9**********88877777777775541333313444444478888887 PP
>> tr|B3SF37|B3SF37_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_9885 PE=4 S
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.7 0.0 2.2e-05 0.016 23 93 .. 30 97 .] 4 97 .] 0.69
Alignments for each domain:
== domain 1 score: 14.7 bits; conditional E-value: 2.2e-05
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE..E--TTSSSHHHHHHHHHHHSSEEEEEE CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti..qgditdpetiekikealserkvdlvvs 93
+ +vD++++PG +q l + + ++v+++D + + ++i + ++ + +t + + ++++ vdlv++
tr|B3SF37|B3SF37_TRIAD 30 NLAVDVACGPGLCTQPLGKYF---KQVIGLDYSHAQIT-EAKIInqTHNV-QFQTGSAYELPCDDNSVDLVTC 97
349*****************8...57******997555.33333323344.3334444444456788999987 PP
>> tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_64190 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.9 0.0 3.8e-05 0.027 13 98 .. 145 234 .. 133 267 .. 0.81
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 3.8e-05
HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS
FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdl 90
+k + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ i d ++p + +++ vd+
tr|B3S5V8|B3S5V8_TRIAD 145 IDKIH-IKPGAKVLYLGAASGTTVSHVSDIVGPNGLVYAVEFSHRsgrdlinvaKKRTNIIPIIEDARHPHKYRMLVG-----MVDV 225
57777.89**********************************998788666554444666666999999999998885.....59** PP
EEE---.-- CS
FtsJ 91 vvsDga.pd 98
+ +D+a pd
tr|B3S5V8|B3S5V8_TRIAD 226 IFADVAqPD 234
*****9444 PP
>> tr|B3RJ30|B3RJ30_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52550 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.6 0.0 4.7e-05 0.034 61 153 .. 54 143 .. 24 169 .. 0.80
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 4.7e-05
TT-EEE.E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHH CS
FtsJ 61 pgvtti.qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteall 145
+++++ ++d + ++++ +++ ++e ++v v +D++ s ++++d++ q+ + l +l+++ gt v+ +f+++++e+++
tr|B3RJ30|B3RJ30_TRIAD 54 ANISLLsRTDAKLKAAAATLRANMEEsQRVTTVACDIS--ASYQKVKDAIDQA---CSELGPVDALINCAGTSVASAFENTAVEDFE 135
56666689999999999999977766588********9..7888999***995...677777778********************** PP
HHHGGGEE CS
FtsJ 146 kqlkkfFe 153
+ ++ ++
tr|B3RJ30|B3RJ30_TRIAD 136 RLMRLNYH 143
99996654 PP
>> tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52388 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.0 7.9e-05 0.057 22 71 .. 120 172 .. 87 256 .. 0.78
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 7.9e-05
T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---TT-EEEE--TT CS
FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvttiqgdit 71
+ ++D +aaPG+ + l+ +g+ gk++a+D+ p+ + + +++
tr|B3RI87|B3RI87_TRIAD 120 QSCIIDACAAPGNKTSHLASIIGNVGKIYAFDISPNriktmrE---LLDKAGVNVM 172
44589*****************999********9986643321...2222233333 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 380 (0.0329918); expected 230.4 (0.02)
Passed bias filter: 312 (0.027088); expected 230.4 (0.02)
Passed Vit filter: 35 (0.00303872); expected 11.5 (0.001)
Passed Fwd filter: 16 (0.00138913); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 16 [number of targets reported over threshold]
# CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05
# Mc/sec: 18486.15
//
[ok]