# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/FtsJ.hmm.txt # target sequence database: proteomes/Trichoplax_adhaerens.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: FtsJ [M=177] Accession: PF01728.18 Description: FtsJ-like methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-69 232.0 0.1 4.7e-69 231.4 0.1 1.3 1 tr|B3SDC9|B3SDC9_TRIAD Putative tRNA (cytidine(32)/guanosine 6.2e-50 169.1 0.0 7.6e-50 168.8 0.0 1.1 1 tr|B3RPL8|B3RPL8_TRIAD Uncharacterized protein OS=Trichoplax 6.8e-48 162.5 0.5 1.6e-47 161.3 0.1 1.8 2 tr|B3S6H5|B3S6H5_TRIAD Putative rRNA methyltransferase OS=Tr 5.5e-35 120.4 0.0 1e-34 119.6 0.0 1.5 1 tr|B3RKR0|B3RKR0_TRIAD Uncharacterized protein OS=Trichoplax 7.5e-26 90.7 0.0 1.6e-20 73.3 0.0 2.6 2 tr|B3RPD9|B3RPD9_TRIAD Uncharacterized protein OS=Trichoplax 9.8e-23 80.5 0.1 1e-22 80.5 0.1 1.0 1 tr|B3SF25|B3SF25_TRIAD Uncharacterized protein OS=Trichoplax 4.4e-05 23.0 0.1 8.4e-05 22.1 0.1 1.5 1 tr|B3RZP1|B3RZP1_TRIAD Uncharacterized protein OS=Trichoplax 0.00069 19.1 0.0 0.0014 18.2 0.0 1.4 1 tr|B3S3E8|B3S3E8_TRIAD Uncharacterized protein (Fragment) OS 0.0048 16.4 0.0 0.012 15.1 0.0 1.7 2 tr|B3RLW0|B3RLW0_TRIAD Uncharacterized protein OS=Trichoplax 0.0068 15.9 0.0 0.066 12.7 0.0 2.3 2 tr|B3RJG2|B3RJG2_TRIAD Uncharacterized protein OS=Trichoplax ------ inclusion threshold ------ 0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 tr|B3SAR8|B3SAR8_TRIAD Uncharacterized protein OS=Trichoplax 0.014 14.9 0.0 0.029 13.9 0.0 1.5 1 tr|B3S8A4|B3S8A4_TRIAD Uncharacterized protein OS=Trichoplax 0.016 14.7 0.0 0.016 14.7 0.0 1.0 1 tr|B3SF37|B3SF37_TRIAD Uncharacterized protein (Fragment) OS 0.017 14.6 0.0 0.027 13.9 0.0 1.3 1 tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax 0.023 14.2 0.0 0.034 13.6 0.0 1.2 1 tr|B3RJ30|B3RJ30_TRIAD Uncharacterized protein OS=Trichoplax 0.024 14.1 0.0 0.057 12.9 0.0 1.7 1 tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax Domain annotation for each sequence (and alignments): >> tr|B3SDC9|B3SDC9_TRIAD Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Trichoplax adhaerens OX= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 231.4 0.1 6.5e-72 4.7e-69 1 177 [] 21 207 .. 21 207 .. 0.96 Alignments for each domain: == domain 1 score: 231.4 bits; conditional E-value: 6.5e-72 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT.............-SEEEEEESS-----TT-EEEE--TTSSSHHH CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl..........gakgkvvavDlqpmaplpgvttiqgditdpetie 77 +r+Rsa+KLl+ide+f +fk ++++vDl+aaPG+wsqvl+++l + k k+vavDlq mapl+gv +iqgdit+ +t++ tr|B3SDC9|B3SDC9_TRIAD 21 WRARSAFKLLQIDEEFTIFKGVTRAVDLCAAPGSWSQVLSKKLrnqenlseaeQSKVKIVAVDLQAMAPLDGVIQIQGDITSVSTAN 107 79*****************************************77666665432269****************************** PP HHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE------ CS FtsJ 78 kikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssr 164 +i ++++++k+dlvv+Dgapdv+g+hdldey q+qLllaal+++ ++lk ggtf++kifrg++++ l++ql+ fF +v++ kP+ssr tr|B3SDC9|B3SDC9_TRIAD 108 RIIDYFEGEKADLVVCDGAPDVTGQHDLDEYFQAQLLLAALNITNHVLKSGGTFIAKIFRGKDVSLLYSQLRVFFPNVTISKPRSSR 194 *************************************************************************************** PP ----EEEEEEEEE CS FtsJ 165 sesseeflvcrgf 177 ++s e+f+vcr++ tr|B3SDC9|B3SDC9_TRIAD 195 NSSIEAFVVCRNY 207 ***********96 PP >> tr|B3RPL8|B3RPL8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53586 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 168.8 0.0 1e-52 7.6e-50 1 176 [. 67 243 .. 67 244 .. 0.96 Alignments for each domain: == domain 1 score: 168.8 bits; conditional E-value: 1e-52 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHHHHHHHHHS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiekikealser 86 yrsRsa+KLle+d+kfk+fk+g+ v+D+ga+PG+w+qv+l ++g++g v+avD++ m+ + + + + ++d+ p+t+ i+++l ++ tr|B3RPL8|B3RPL8_TRIAD 67 YRSRSAFKLLEMDKKFKIFKKGDIVIDIGASPGSWTQVALDKTGKRGLVMAVDIRGMKSVgEAMIFDHMDFGVPSTHTFIQNMLVNS 153 9*******************************************9***************5555555******************** PP SEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEE CS FtsJ 87 kvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflv 173 k+d+++sD++p+v g ++d+ + +l+al+++++ l +gtf++k+f+g++ + lk+ +++++ +kP++srses+e +++ tr|B3RPL8|B3RPL8_TRIAD 154 KADVIMSDMSPNVAGSPKFDHQAIMTQALCALKFTFANLVYNGTFICKMFHGSDEGLFKDMLKQNYHRINEFKPAASRSESNEFYYI 240 ***************************************************9988877777************************** PP EEE CS FtsJ 174 crg 176 cr tr|B3RPL8|B3RPL8_TRIAD 241 CRH 243 *96 PP >> tr|B3S6H5|B3S6H5_TRIAD Putative rRNA methyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_59807 PE=3 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.3 0.1 2.2e-50 1.6e-47 1 161 [. 24 184 .. 24 186 .. 0.99 2 ? -3.4 0.0 8 5.7e+03 69 110 .. 205 259 .. 200 266 .. 0.65 Alignments for each domain: == domain 1 score: 161.3 bits; conditional E-value: 2.2e-50 TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87 yr+Rsa+KL++++ kf++++ + vDl+aaPGgw qv+++ + ++ +v+vDl ++p+p+v t++gdit+ + +++ik+ l+ k tr|B3S6H5|B3S6H5_TRIAD 24 YRARSAFKLIQLNRKFQFLETSRVLVDLCAAPGGWLQVASRFMPISSLIVGVDLVTIKPIPNVITLTGDITTDACKQAIKKELHTWK 110 9****************999**********************9779***************************************** PP EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE--- CS FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPk 161 +d v++Dgap+v +++d++ q+qL l+al+la++llk+gg+f++k+fr+++ +l+ ++++F+kv+ +kP+ tr|B3S6H5|B3S6H5_TRIAD 111 ADSVLHDGAPNVGQAWVQDAFSQAQLTLSALRLACQLLKRGGCFITKVFRSKDYYSLMWVFQQLFKKVHATKPQ 184 *************************************************************************7 PP == domain 2 score: -3.4 bits; conditional E-value: 8 -TTSSSHHHHHHHHHHH............SSEEEEEE---.----S-HHHHHHHH CS FtsJ 69 ditdpetiekikealse............rkvdlvvsDga.pdvsgvhdldeylq 110 di ++++++ki+ ++se +k l +s + +++ + ld++ + tr|B3S6H5|B3S6H5_TRIAD 205 DIETETKQNKINLMFSEkrkdrnragypdNKHTLFTSTPVtDFITSENYLDHLAS 259 8888888888888887766666666666655555555533245666666666665 PP >> tr|B3RKR0|B3RKR0_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_51728 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 119.6 0.0 1.4e-37 1e-34 2 177 .] 196 412 .. 195 412 .. 0.88 Alignments for each domain: == domain 1 score: 119.6 bits; conditional E-value: 1.4e-37 TSHHHHHHHHHHHHH-.-S-TT-E..............EEEES-TT-HHHHHHTTT...-SEEEEEESS--................ CS FtsJ 2 rsRsayKLleidekfk.lfkpgkt..............vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm................ 57 +R+a+K++++d +k +f++ + + D++a+PGg+++++l++ ++k ++++l+ tr|B3RKR0|B3RKR0_TRIAD 196 LNRAAMKMANLDYVYKyIFTNPRDdkgnekirsldilyFADICAGPGGFTEYVLWKRRWHAKGFGITLKDPknasdfkltdflagtp 282 68**************6666332235667788888888******************6447999999996665888888888887777 PP ...---TT-EEE..E--TTSSSHHHHHHHHHHH...SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE CS FtsJ 58 ...aplpgvtti..qgditdpetiekikealse...rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkif 136 +p gv+ + gd+t+ e+ +++ e++ +v++ ++Dg+++v+g+++++e+l+ qL+l+++ +a+++l++gg+fv+k+f tr|B3RKR0|B3RKR0_TRIAD 283 etfEPYYGVNGVngDGDVTRTENLRAFAEFVRSsseGGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLCAISVLREGGNFVCKLF 369 6656778999999999*********9997665566688************************************************* PP -.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS FtsJ 137 r.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177 + ++ ++ +ll+ + + F+++s+vkP +sr+++se+++vc+g+ tr|B3RKR0|B3RKR0_TRIAD 370 DiFTPFSvGLLYLFYRIFRRISLVKPLTSRPANSERYIVCEGY 412 **999999********************************986 PP >> tr|B3RPD9|B3RPD9_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53500 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.0 2.2e-23 1.6e-20 4 177 .] 97 313 .. 94 313 .. 0.84 2 ! 14.4 0.1 2.7e-05 0.019 77 154 .. 617 693 .. 552 719 .. 0.80 Alignments for each domain: == domain 1 score: 73.3 bits; conditional E-value: 2.2e-23 HHHHHHHHHHHHH--S-TT-E................EEEES-TT-HHHHHHTTT........-SEEEEEESS--............ CS FtsJ 4 RsayKLleidekfklfkpgkt................vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm............ 57 +++ K +ei+++ + +++ + ++l+ +PG+++ ++ l+ ++++a++l+p+ tr|B3RPD9|B3RPD9_TRIAD 97 QAWAKFYEILHRCN-IDQRLNlqqwsddldlsqiplsSLHLCEGPGAFMTSFNHYLKShyphlPWQWLAMTLNPYyegnkdgstitd 182 78999999999999.6644334556667777777777*******************66444445***********998888765554 PP .---TT-EEE.............E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEE CS FtsJ 58 .aplpgvtti.............qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpgg 129 ++ i g+i++ ++ + e ls+ + lv++Dg+ d+s + ++e++ s +l + + +al++l ++g tr|B3RPD9|B3RPD9_TRIAD 183 nRL------IsktlshwnfgrdnSGNILHRHNMTFLVESLSQwPSIRLVTADGSIDCSDRPGQQEAIVSPILYCETLTALRILTKDG 263 311......133445567779*9***********98888888688****************************************** PP EEEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS FtsJ 130 tfvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177 + vlk+f+ +++ + l++ l ++F++v+ +kP+ s+s++se++++c g+ tr|B3RPD9|B3RPD9_TRIAD 264 VYVLKMFTsFQHRSiCLIYLLLNVFQEVKAIKPSCSKSGNSEVYIICIGY 313 ********97777779999999*************************875 PP == domain 2 score: 14.4 bits; conditional E-value: 2.7e-05 HHHHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEE CS FtsJ 77 ekikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFek 154 + i+e++ + vd+v +D p + ++ + +L+l+ + la+k+l+ +g+++l + + ++++ ++++ l fF+k tr|B3RPD9|B3RPD9_TRIAD 617 RYIQETF--KAVDIVFADFHPESIK-ERASQTSHNKLILSEVLLACKVLAMNGHLILTVGDlLSRFQcSVVYMLHVFFNK 693 3444444..67*********76655.7777777789********************999887666666777777777765 PP >> tr|B3SF25|B3SF25_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_34847 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.5 0.1 1.4e-25 1e-22 86 175 .. 4 93 .. 1 95 [. 0.96 Alignments for each domain: == domain 1 score: 80.5 bits; conditional E-value: 1.4e-25 SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEE CS FtsJ 86 rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseefl 172 +++++++sD+ap++sg+++l +++ ++L+++ + ++ + l+++g++++k+f+g + ++++++l+k+F++v+ +kP++s ++sse+f+ tr|B3SF25|B3SF25_TRIAD 4 NQCNVILSDMAPNTSGTRSLNHINIMNLAESVFDFSQQFLSKNGHMIIKLFEGNKNKEFYNKLRKHFKNVHFFKPEASYKDSSEIFI 90 6899*********************************************************************************** PP EEE CS FtsJ 173 vcr 175 v + tr|B3SF25|B3SF25_TRIAD 91 VGL 93 975 PP >> tr|B3RZP1|B3RZP1_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_26585 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.1 1.2e-07 8.4e-05 20 111 .. 160 254 .. 143 311 .. 0.70 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 1.2e-07 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.......SSEEEEEE------ CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.......rkvdlvvsDgapdv 99 +p+++v+D ++aPGg + +++ ++++g++va D+++ ++++ ++++i + + ++i ++ ++d v+ D + tr|B3RZP1|B3RZP1_TRIAD 160 QPNEKVLDMCSAPGGKTTYIAALMKNTGMIVANDVNK----ERCKALTANIHRLGVVNTIVCSENGrqfpkivGGFDRVLLDAPCSG 242 47899*******************999********99....5666666666666666655533333444445545777777776666 PP -S-HHHHHHHHH CS FtsJ 100 sgvhdldeylqs 111 +gv ++d+ ++s tr|B3RZP1|B3RZP1_TRIAD 243 TGVISKDASVKS 254 666666666663 PP >> tr|B3S3E8|B3S3E8_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_28123 PE=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.0 1.9e-06 0.0014 20 134 .. 202 341 .. 186 361 .. 0.73 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 1.9e-06 -TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---TT-EEEE--TTSSSHHHHHHHHHHH...........SSEE CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvttiqgditdpetiekikealse...........rkvd 89 ++g+t++D ++aPGg + +++ +++kg ++a+D + ++ +++++ + ++ + +++ + ++ + +d tr|B3S3E8|B3S3E8_TRIAD 202 HEGDTILDMCSAPGGKATHIATLMKNKGTIIALDKSKSklhkikSNAERLNLSCIEVFAFDSTKAVADICQCqeglrcppfalESFD 288 48999*******************999********9995554432336777778888888777777765544667888888888899 PP EEEE-------S-HHHHHHHH..........HHHHHHHHHHHHHHEEEEEEEEEE CS FtsJ 90 lvvsDgapdvsgvhdldeylq..........sqLllaalelalkllkpggtfvlk 134 ++ D +sg+ + + + s+ ++ l+ a++llk gg++v tr|B3S3E8|B3S3E8_TRIAD 289 RILLDPP--CSGMGQRPCLAYkmsakelrsySCYQRKLLSQAFQLLKVGGILVYC 341 9999854..5555444444444466666666677777888888889999998844 PP >> tr|B3RLW0|B3RLW0_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_49708 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 1.7e-05 0.012 16 58 .. 35 83 .. 28 162 .. 0.78 2 ? -2.3 0.0 3.7 2.7e+03 29 42 .. 251 264 .. 216 301 .. 0.71 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.7e-05 H--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........- CS FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........a 58 +lf +gktv+D+g+++G + ++++ ga +kv+++D + a tr|B3RLW0|B3RLW0_TRIAD 35 KHLF-RGKTVLDIGCGTGILCMFAAKA-GA-AKVIGIDCSGIieqaeaivkA 83 3455.99********************.88.9******97765655444332 PP == domain 2 score: -2.3 bits; conditional E-value: 3.7 S-TT-HHHHHHTTT CS FtsJ 29 gaaPGgwsqvllqr 42 g+++G +sq+ ++ tr|B3RLW0|B3RLW0_TRIAD 251 GFSTGPYSQYTHWK 264 66677777776655 PP >> tr|B3RJG2|B3RJG2_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_19981 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.7 0.0 9.2e-05 0.066 20 142 .. 159 313 .. 122 333 .. 0.66 2 ? 0.4 0.0 0.56 4e+02 31 77 .. 403 450 .. 386 516 .. 0.84 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 9.2e-05 -TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---TT-EEE..E--TTSSSHHHHHHHHHHH... CS FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........aplpgvtti..qgditdpetiekikealse... 85 +p + v+D +aaPG+ + l + l++ +g ++a D + + l+ ++ + d ++ +i k+ +s+ tr|B3RJG2|B3RJG2_TRIAD 159 QPHHYVLDMCAAPGSKTAQLIEFLHQdsskiipDGLIIANDADNKrcymlvhqsKRLNSPCFMitNYDASTMPNIYISKDGISKnip 245 36688***************9999665554444599999999666577777664333444444346666666666666665555555 PP SSEEEEEE-------S-HHHHHHHH.............HHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH CS FtsJ 86 rkvdlvvsDgapdvsgvhdldeylq.............sqLllaalelalkllkpggtfvlkifrgeete 142 d +++D+ +sg +l + + +L l+ l +++ll+++g++v ++ + +e tr|B3RJG2|B3RJG2_TRIAD 246 IVYDRILCDVP--CSGDGTLRKNIMlwkrwnqnnalslHCLQLRILIRGVELLARDGILVYSTCSFNPIE 313 55899999986..334322222222234444444443347777777778889999999888777744443 PP == domain 2 score: 0.4 bits; conditional E-value: 0.56 TT-HHHHHHTTT....-SEEEEEESS-----TT-EEEE--TTSSSHHH CS FtsJ 31 aPGgwsqvllqrlga.kgkvvavDlqpmaplpgvttiqgditdpetie 77 +Gg+ +lq++ + ++ + +q ++++p v++ + d+t + ++ tr|B3RJG2|B3RJG2_TRIAD 403 NTGGFFVAVLQKVDHlTWLSKSKSVQAITQIPEVKSKTEDVTVDDPAK 450 589999999999976567777888899999999999999998766555 PP >> tr|B3SAR8|B3SAR8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_61356 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.9 0.0 2e-05 0.014 23 108 .. 46 123 .. 13 180 .. 0.64 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 2e-05 -EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE..E--TTSSSHHHHHHHHHHHSSEEEEEE-------S-HHHHH CS FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti..qgditdpetiekikealserkvdlvvsDgapdvsgvhdlde 107 + +vD++++PG +q l + + ++v+++D + + ++i + ++ + +t + + ++++ vdlv++ a lde tr|B3SAR8|B3SAR8_TRIAD 46 NLAVDVACGPGLCTQPLGKYF---KQVIGLDYSHAQIT-EAKIInqTHNV-QFQTGSAYELPCDDNSVDLVTCAQALH-----CLDE 122 339*****************8...57******997655.33333324444.4444444554556899******98843.....3333 PP H CS FtsJ 108 y 108 tr|B3SAR8|B3SAR8_TRIAD 123 E 123 3 PP >> tr|B3S8A4|B3S8A4_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_60467 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 4e-05 0.029 17 93 .. 25 99 .. 11 117 .. 0.74 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 4e-05 --S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSS.SHHH.HHHHHHHHSSEEEEEE CS FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdp.etie.kikealserkvdlvvs 93 + + ++k v+D+ga++G s ++++ ga kv+av +a + + + +d+ ++i+ ++++ +kvd++vs tr|B3S8A4|B3S8A4_TRIAD 25 R-I-RNKVVLDVGAGTGILSHFCVEA-GA-RKVYAVEASAIAEQAKKVALANNAQDKiSVINdLVENIELPEKVDVIVS 99 3.2.5678******************.88.9**********88877777777775541333313444444478888887 PP >> tr|B3SF37|B3SF37_TRIAD Uncharacterized protein (Fragment) OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_9885 PE=4 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 2.2e-05 0.016 23 93 .. 30 97 .] 4 97 .] 0.69 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 2.2e-05 -EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE..E--TTSSSHHHHHHHHHHHSSEEEEEE CS FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti..qgditdpetiekikealserkvdlvvs 93 + +vD++++PG +q l + + ++v+++D + + ++i + ++ + +t + + ++++ vdlv++ tr|B3SF37|B3SF37_TRIAD 30 NLAVDVACGPGLCTQPLGKYF---KQVIGLDYSHAQIT-EAKIInqTHNV-QFQTGSAYELPCDDNSVDLVTC 97 349*****************8...57******997555.33333323344.3334444444456788999987 PP >> tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_64190 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 3.8e-05 0.027 13 98 .. 145 234 .. 133 267 .. 0.81 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 3.8e-05 HHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS FtsJ 13 dekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdl 90 +k + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ i d ++p + +++ vd+ tr|B3S5V8|B3S5V8_TRIAD 145 IDKIH-IKPGAKVLYLGAASGTTVSHVSDIVGPNGLVYAVEFSHRsgrdlinvaKKRTNIIPIIEDARHPHKYRMLVG-----MVDV 225 57777.89**********************************998788666554444666666999999999998885.....59** PP EEE---.-- CS FtsJ 91 vvsDga.pd 98 + +D+a pd tr|B3S5V8|B3S5V8_TRIAD 226 IFADVAqPD 234 *****9444 PP >> tr|B3RJ30|B3RJ30_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52550 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 4.7e-05 0.034 61 153 .. 54 143 .. 24 169 .. 0.80 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 4.7e-05 TT-EEE.E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHH CS FtsJ 61 pgvtti.qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteall 145 +++++ ++d + ++++ +++ ++e ++v v +D++ s ++++d++ q+ + l +l+++ gt v+ +f+++++e+++ tr|B3RJ30|B3RJ30_TRIAD 54 ANISLLsRTDAKLKAAAATLRANMEEsQRVTTVACDIS--ASYQKVKDAIDQA---CSELGPVDALINCAGTSVASAFENTAVEDFE 135 56666689999999999999977766588********9..7888999***995...677777778********************** PP HHHGGGEE CS FtsJ 146 kqlkkfFe 153 + ++ ++ tr|B3RJ30|B3RJ30_TRIAD 136 RLMRLNYH 143 99996654 PP >> tr|B3RI87|B3RI87_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_52388 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 7.9e-05 0.057 22 71 .. 120 172 .. 87 256 .. 0.78 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 7.9e-05 T-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---TT-EEEE--TT CS FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvttiqgdit 71 + ++D +aaPG+ + l+ +g+ gk++a+D+ p+ + + +++ tr|B3RI87|B3RI87_TRIAD 120 QSCIIDACAAPGNKTSHLASIIGNVGKIYAFDISPNriktmrE---LLDKAGVNVM 172 44589*****************999********9986643321...2222233333 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (177 nodes) Target sequences: 11518 (5222075 residues searched) Passed MSV filter: 380 (0.0329918); expected 230.4 (0.02) Passed bias filter: 312 (0.027088); expected 230.4 (0.02) Passed Vit filter: 35 (0.00303872); expected 11.5 (0.001) Passed Fwd filter: 16 (0.00138913); expected 0.1 (1e-05) Initial search space (Z): 11518 [actual number of targets] Domain search space (domZ): 16 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05 # Mc/sec: 18486.15 // [ok]