# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-65 217.4 0.0 1.1e-64 216.7 0.0 1.3 1 tr|Q586L7|Q586L7_TRYB2 Putative tRNA (cytidine(32)/guanosine
1.3e-54 183.9 0.0 2e-54 183.3 0.0 1.3 1 tr|Q586Q7|Q586Q7_TRYB2 Putative rRNA methyltransferase OS=Tr
4.1e-46 156.2 0.1 4.8e-46 156.0 0.1 1.0 1 tr|Q57XD9|Q57XD9_TRYB2 Ribosomal RNA methyltransferase, puta
4.9e-44 149.5 0.1 5.8e-44 149.3 0.1 1.1 1 tr|Q57Y21|Q57Y21_TRYB2 rRNA methyltransferase, putative OS=T
2.1e-32 111.6 0.0 4e-32 110.7 0.0 1.4 2 sp|Q38AH0|MTR1_TRYB2 Cap-specific mRNA (nucleoside-2'-O-)-
2e-05 23.8 0.1 4.8e-05 22.5 0.0 1.7 2 tr|Q583H8|Q583H8_TRYB2 Nucleolar protein, putative OS=Trypan
9.7e-05 21.5 0.0 0.00026 20.1 0.1 1.8 2 tr|Q57V63|Q57V63_TRYB2 Uncharacterized protein OS=Trypanosom
0.00028 20.0 0.0 0.0005 19.2 0.0 1.3 1 tr|Q38AT8|Q38AT8_TRYB2 Uncharacterized protein OS=Trypanosom
0.0005 19.2 0.0 0.001 18.2 0.0 1.4 1 tr|Q388U8|Q388U8_TRYB2 Methyltransferase, putative OS=Trypan
0.0012 17.9 0.0 0.0034 16.5 0.0 1.6 1 tr|Q38FU9|Q38FU9_TRYB2 Uncharacterized protein OS=Trypanosom
0.0021 17.2 0.0 0.0029 16.7 0.0 1.3 1 tr|Q4GYA9|Q4GYA9_TRYB2 Arginine N-methyltransferase, putativ
0.0082 15.2 0.4 0.06 12.4 0.4 2.1 1 tr|Q580I8|Q580I8_TRYB2 Uncharacterized protein OS=Trypanosom
------ inclusion threshold ------
0.014 14.4 0.0 0.023 13.8 0.0 1.3 1 tr|Q388E0|Q388E0_TRYB2 Fibrillarin, putative OS=Trypanosoma
0.018 14.1 0.0 0.12 11.4 0.0 2.2 2 tr|Q582C3|Q582C3_TRYB2 Uncharacterized protein OS=Trypanosom
0.028 13.5 0.0 0.04 13.0 0.0 1.3 1 tr|Q388C9|Q388C9_TRYB2 Fibrillarin, putative OS=Trypanosoma
Domain annotation for each sequence (and alignments):
>> tr|Q586L7|Q586L7_TRYB2 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Trypanosoma brucei bruce
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 216.7 0.0 2e-67 1.1e-64 1 177 [] 21 310 .. 21 310 .. 0.96
Alignments for each domain:
== domain 1 score: 216.7 bits; conditional E-value: 2e-67
TTSHHHHHHHHHHHHH--S-TT-E...EEEES-TT-HHHHHHTTT.........................-SEEEEEESS-----TT CS
FtsJ 1 yrsRsayKLleidekfklfkpgkt...vvDlgaaPGgwsqvllqrl......................gakgkvvavDlqpmaplpg 62
yr+RsayKLl+++e+f+++++++ vvDl+aaPG+wsqvl+++l +++++vavDlq+m p++g
tr|Q586L7|Q586L7_TRYB2 21 YRARSAYKLLQLHEEFGILRREEIrtgVVDLCAAPGSWSQVLSNHLcgsqpgsaaeacegdeainseaSQRPRIVAVDLQEMMPIDG 107
9******************85533447*******************9999999999988887776644226**************** PP
-EEEE--TTSSSHHHHHHHHHHH................................................................ CS
FtsJ 63 vttiqgditdpetiekikealse................................................................ 85
v+++qgdit++ t+++i ++l++
tr|Q586L7|Q586L7_TRYB2 108 VQLLQGDITSEWTAREIIRLLNGdsssvpecsdatalstagaindfnngrgnnvseegkssqqrsdcgvglmnernnasecvdgdnn 194
**********************9**************************************************************** PP
........................SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHH CS
FtsJ 86 ........................rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkql 148
rk+dlvv+Dgapdv+g+h+ldeylq +Lllaal++++ +l++ggtfv+k+frg++t +l+++
tr|Q586L7|Q586L7_TRYB2 195 nnnsnnnddrnggdagastrpvagRKADLVVCDGAPDVTGMHELDEYLQHHLLLAALNITTFVLRRGGTFVTKMFRGPNTPFLVAKA 281
*************************************************************************************** PP
GGGEEEEEEE----------EEEEEEEEE CS
FtsJ 149 kkfFekvsvvkPkssrsesseeflvcrgf 177
+ fF++v+++kPkssr++s e+f+vc+++
tr|Q586L7|Q586L7_TRYB2 282 EVFFRQVTIAKPKSSRNASMEAFMVCQNY 310
**************************996 PP
>> tr|Q586Q7|Q586Q7_TRYB2 Putative rRNA methyltransferase OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=1854
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 183.3 0.0 3.6e-57 2e-54 1 177 [] 25 201 .. 25 201 .. 0.99
Alignments for each domain:
== domain 1 score: 183.3 bits; conditional E-value: 3.6e-57
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87
+r+Rsa+KL +++ k++++++ + vDl+aaPG+w+qv+++++ ++k+v+vDl p+ap+ gv+t+ gdit+++t++ i ++l++++
tr|Q586Q7|Q586Q7_TRYB2 25 FRARSAFKLVQLNRKYDFLSKCRVLVDLCAAPGSWCQVAAKHMPVGSKIVGVDLVPIAPIRGVKTFVGDITEEKTKKIIMTYLKREP 111
79***************99************************999***************************************** PP
EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS
FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174
vd+v++Dgap+v gv++ d + q +L+l a +la+kll+pgg fv+k+fr++++ +l+ +k++F+kv+ +kP +sr es+e+f+ c
tr|Q586Q7|Q586Q7_TRYB2 112 VDCVIHDGAPNVGGVWSRDLFEQNSLVLHAAKLASKLLRPGGWFVTKVFRSQDFHKLMWVMKQLFDKVEATKPLASRMESAEIFVTC 198
*************************************************************************************** PP
EEE CS
FtsJ 175 rgf 177
g+
tr|Q586Q7|Q586Q7_TRYB2 199 AGY 201
986 PP
>> tr|Q57XD9|Q57XD9_TRYB2 Ribosomal RNA methyltransferase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 156.0 0.1 8.4e-49 4.8e-46 1 177 [] 34 218 .. 34 218 .. 0.92
Alignments for each domain:
== domain 1 score: 156.0 bits; conditional E-value: 8.4e-49
TTSHHHHHHHHHHHHH--S-..TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHHHHHHHH CS
FtsJ 1 yrsRsayKLleidekfklfk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiekikeals 84
y++Rsa+KLle+d+kf lf+ +++ vvD+g++PG+w qv+ +r+g k+ v++vD+ +a g +iqgd+t+p+++e+++ +
tr|Q57XD9|Q57XD9_TRYB2 34 YVARSAFKLLEMDDKFTLFSrgNTRVVVDIGCSPGSWLQVIRERCGDKCAVFGVDVLRVASTvTGAVCIQGDFTNPAVREELLARMV 120
99*****************8455566******************************9996666*****************9998777 PP
H....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHH.HHHHHHGGGEEEEEEE-------- CS
FtsJ 85 e....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeete.allkqlkkfFekvsvvkPkssrse 166
vd+v+sD++ + ++ d +q +L ++al +al++l pgg+fv+k++ ++ + +l +++ + F + +++kP+ssr +
tr|Q57XD9|Q57XD9_TRYB2 121 TvraaGVVDVVTSDMCLNRGTGSTSDRQKQEELNRSALAFALEQLVPGGNFVCKVLGSPTAYeELRRDTCRWFVRTDICKPSSSRLT 207
7666667*********988888***********************************77777488888999**************** PP
--EEEEEEEEE CS
FtsJ 167 sseeflvcrgf 177
s e+f+vcrg+
tr|Q57XD9|Q57XD9_TRYB2 208 SDEAFMVCRGK 218
*********85 PP
>> tr|Q57Y21|Q57Y21_TRYB2 rRNA methyltransferase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 149.3 0.1 1e-46 5.8e-44 1 177 [] 2 225 .. 2 225 .. 0.85
Alignments for each domain:
== domain 1 score: 149.3 bits; conditional E-value: 1e-46
TTSHHHHHHHHHHHHH--S-.TT-EEEEES-TT-HHHHHHTTT.............-SEEEEEESS-----TT-EEEE--T.TSSSH CS
FtsJ 1 yrsRsayKLleidekfklfk.pgktvvDlgaaPGgwsqvllqrlga..........kgkvvavDlqpmaplpgvttiqgdi.tdpet 75
yr+RsayKLle+d+kf+lf +tvvDl+aaPGg+s+v+lqr++a k+ v+a+D++pm+ ++++q++i ++++
tr|Q57Y21|Q57Y21_TRYB2 2 YRCRSAYKLLELDDKFSLFGgCCRTVVDLAAAPGGFSEVALQRMTAaedvtsrppvKPLVIAFDTRPMKAARDLHVVQCNInDHKRV 88
9******************8899*********************5555555555557************************556778 PP
HHHHHHHHHH........SSEEEEEE-------S-HHHHHHHH..HHHHHHHHHHHHHHEE.......................... CS
FtsJ 76 iekikealse........rkvdlvvsDgapdvsgvhdldeylq..sqLllaalelalkllk.......................... 126
i ++e++++ r+vd+v++Dg+ +v h+ +++ q++ al+la++l+
tr|Q57Y21|Q57Y21_TRYB2 89 IASVEEFIQRrgvgdgadRQVDVVLHDGV-SVAKSHSAFSVTYaqNQMAVGALRLACALFLlssqpagtrqppraedglassskaep 174
88999988889******************.665556555554433466666666666554445566668888888888889999998 PP
EEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 127 pggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
+g tfv+k++r+++++++l+++k++F++vsv++P++++ +sse+++v+rgf
tr|Q57Y21|Q57Y21_TRYB2 175 QGPTFVTKAMRSAHFNQVLSAMKAYFRHVSVHRPAECNAASSETYVVARGF 225
999**********************************************98 PP
>> sp|Q38AH0|MTR1_TRYB2 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Trypanosoma brucei brucei (strain 9
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.7 0.0 7e-35 4e-32 1 177 [] 88 293 .. 88 293 .. 0.88
2 ? -3.6 0.0 8.6 4.9e+03 48 61 .. 331 347 .. 322 366 .. 0.63
Alignments for each domain:
== domain 1 score: 110.7 bits; conditional E-value: 7e-35
TTSHHHHHHHHHHHHH--S-..TT-E........EEEES-TT-HHHHHHTTT.......-SEEEEEESS--......---TT-EEE... CS
FtsJ 1 yrsRsayKLleidekfklfk..pgkt........vvDlgaaPGgwsqvllqrlga....kgkvvavDlqpm......aplpgvtti... 66
+r+R+++KL e e+++l + +g++ +vD++ +PG++sq l g+ + + ++++l+++ + lp +++
sp|Q38AH0|MTR1_TRYB2 88 FRNRAGHKLHETMEAVGLWEylKGGAtrakgtftFVDVCGGPGAFSQALFAM-GKehklRLRGFGLTLRNVkgldwyTDLPSRSFFpcy 175
79***************88766554457788888***************887.4435445999*****999666666455666666889 PP
....E--TTSSSHHHHHHHHHHHSSEEEEEE------.-S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHH CS
FtsJ 67 ....qgditdpetiekikealserkvdlvvsDgapdv.sgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkql 148
+gd+++ e+ie + ++ ++ v lvv+Dg++dv + v +++e+++++++ ++ a+kll+pgg+fvlk+f+ ++ ++ a+l +
sp|Q38AH0|MTR1_TRYB2 176 gidgTGDVFKLENIESLCSLTCKENVRLVVADGGFDVpTEVVNFQETISCRIVYGQWLSAVKLLRPGGCFVLKLFDcFSPFTrAILFLT 264
99***********************************56669**********************************9777775888889 PP
GGGEEEEEEE----------EEEEEEEEE CS
FtsJ 149 kkfFekvsvvkPkssrsesseeflvcrgf 177
+++e+v+vvkP++sr +se++lvc gf
sp|Q38AH0|MTR1_TRYB2 265 THLYESVQVVKPRHSRVVNSERYLVCIGF 293
9*************************987 PP
== domain 2 score: -3.6 bits; conditional E-value: 8.6
EEEEEESS-----...T CS
FtsJ 48 kvvavDlqpmapl...p 61
k+++ D+ m+ +
sp|Q38AH0|MTR1_TRYB2 331 KIFGADVERMSATiasN 347
67788887773322333 PP
>> tr|Q583H8|Q583H8_TRYB2 Nucleolar protein, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.5 0.0 8.4e-08 4.8e-05 23 137 .. 258 386 .. 217 406 .. 0.72
2 ? -3.2 0.0 6.7 3.8e+03 124 147 .. 441 470 .. 429 492 .. 0.61
Alignments for each domain:
== domain 1 score: 22.5 bits; conditional E-value: 8.4e-08
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH.......SSEEEEEE----..... CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse.......rkvdlvvsDgap..... 97
++v+D +aaPGg + +++q ++++g+++a D+ + p+ ++++++ ++ + +++ + ++ + +d ++ D
tr|Q583H8|Q583H8_TRYB2 258 ERVLDMAAAPGGKTTYIAQLMKNTGVIFANDVSE----PRTKSLNANLQRLGVTNTVVTNYDGvgfekvmKNFDRILLDAPCtgsgi 340
67*******************999********88....6666666666666666666655544555556655666666654323333 PP
.......---S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE- CS
FtsJ 98 .......dvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr 137
++s + d ++sqL ++ l a++ ++ gg +v ++
tr|Q583H8|Q583H8_TRYB2 341 isrdksiKTSK-QYEDVQRASQLQRSLLLSAIDAVRVGGYIVYSTCS 386
33332103333.445555559******************99977665 PP
== domain 2 score: -3.2 bits; conditional E-value: 6.7
HEEEEEEEEEEEE-......STTHHHHHHH CS
FtsJ 124 llkpggtfvlkifr......geeteallkq 147
+ + +g fv+k+ + g++t++l k+
tr|Q583H8|Q583H8_TRYB2 441 VHNMDGFFVCKLKKlsnnagGPSTNGLKKE 470
555677888887776666655555555554 PP
>> tr|Q57V63|Q57V63_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 0.0 9.2 5.2e+03 97 120 .. 68 91 .. 66 98 .. 0.81
2 ! 20.1 0.1 4.5e-07 0.00026 20 137 .. 151 289 .. 119 316 .. 0.66
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 9.2
----S-HHHHHHHHHHHHHHHHHH CS
FtsJ 97 pdvsgvhdldeylqsqLllaalel 120
p+v +++ ey++s+Ll aal +
tr|Q57V63|Q57V63_TRYB2 68 PSVPCATAVSEYVRSRLLHAALPV 91
56666788999999****999976 PP
== domain 2 score: 20.1 bits; conditional E-value: 4.5e-07
-TT-EEEEES-TT-HHHHHHTTT......-SEEEEEESS--...........---TT-EEE..E--TTSSSHHHHHHHHHHHSSEEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrl...gakgkvvavDlqpm...........aplpgvtti..qgditdpetiekikealserkvdl 90
pg++v+D +aaPG+ + +l+ + +++g+vva Dl+ +p + ++i + d t+ + k e k+d
tr|Q57V63|Q57V63_TRYB2 151 APGNRVLDMCAAPGSKTSQILEAVissNQDGVVVANDLNVArldvllhqtarSPGAHPHLIvtNYDGTQFPLLP--K----EDKFDR 231
47899***************9999655446********988777776665432222333331133333333333..2....3689** PP
EEE-------S-HHHHHHHH..........HHHHHHHHHH...HHHHEEEEEEEEEEEE- CS
FtsJ 91 vvsDgapdvsgvhdldeylq..........sqLllaalel...alkllkpggtfvlkifr 137
v++D+ +sg +l + + ++L ++++ ++ l+k+gg++v ++
tr|Q57V63|Q57V63_TRYB2 232 VLCDVM--CSGDGTLRKSMDmwprwntvhgADLHVTQVRVltrGMMLCKKGGIVVYSTCS 289
****98..6776666666666666777777666666666622233577788887776666 PP
>> tr|Q38AT8|Q38AT8_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 8.7e-07 0.0005 20 139 .. 168 345 .. 154 366 .. 0.81
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 8.7e-07
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.---...TT-EEEE--TTSSSHHHHHHHHHHH................. CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.apl...pgvttiqgditdpetiekikealse................. 85
+p+++++D +a+PG+ + +l lg +kvv D p+ + ++ di ++++ ++ + +++
tr|Q38AT8|Q38AT8_TRYB2 168 QPTDKCLDMCASPGSKTAQILVSLGR-HKVVPHDSDASpFPFdydSEGLVVANDIDTKRANMLVHQ-VKRmrllfpfalftnhdaqf 252
58899***************999997.99*****98876555543444455899988888887774.56678999999999999*** PP
............................SSEEEEEE-------S-.HHHHHHHH.......HHHHHHHHHH...HHHHEEEEEEEEE CS
FtsJ 86 ............................rkvdlvvsDgapdvsgv.hdldeylq.......sqLllaalel...alkllkpggtfvl 133
++d +++D++ + g+ ++ +++l+ ++L + ++++ a++ll+ gg +v
tr|Q38AT8|Q38AT8_TRYB2 253 fpnmvltpgeaqphtcgqqttgddgateLRFDKILCDVVCSGDGTiRKAPHILKmwspreaISLQKVQIQIalrACHLLRVGGRLVY 339
**************************9999********96666666777777779999999788888888844455799*****998 PP
EEE-ST CS
FtsJ 134 kifrge 139
++
tr|Q38AT8|Q38AT8_TRYB2 340 STCSMN 345
877743 PP
>> tr|Q388U8|Q388U8_TRYB2 Methyltransferase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.2 0.0 1.8e-06 0.001 19 137 .. 262 416 .. 242 441 .. 0.67
Alignments for each domain:
== domain 1 score: 18.2 bits; conditional E-value: 1.8e-06
S-TT-EEEEES-TT-HHHHHHTTT....................-SEEEEEESS--...---..TT-EEEE--T....TSSSHHHHH CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrl.................gakgkvvavDlqpm...apl..pgvttiqgdi....tdpetieki 79
++p +tv+D +aaPG+ + +l ++ ++k +v a + p + p+v + ++d + +
tr|Q388U8|Q388U8_TRYB2 262 IQPHHTVLDMCAAPGSKTLQALDEMlkngwnssavssgvmvaNEKDRVKATQTLPArlkR-YhaPNVICTRCDAvqwpRLLCPTTQG 347
46889***********99999888888888777777766665336888888888885532.25799999999985444222233344 PP
HHHHHHSSEEEEEE-------S-HHHHHHHH...........HHHHHHHHHHHHHHEEEEEEEEEEEE- CS
FtsJ 80 kealserkvdlvvsDgapdvsgvhdldeylq...........sqLllaalelalkllkpggtfvlkifr 137
+l+er++d v++D+ + g+ ++ l+ + +a l+ +l+ll+++g++v ++
tr|Q388U8|Q388U8_TRYB2 348 DMHLGERRFDRVICDVPCSGDGTLRKEPSLAsswsagyvkslLPTQRALLRRGLDLLETDGILVYSTCS 416
577899*********974444443333333356766666544444455555566667777777755554 PP
>> tr|Q38FU9|Q38FU9_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.5 0.0 6e-06 0.0034 24 137 .. 237 374 .. 223 399 .. 0.65
Alignments for each domain:
== domain 1 score: 16.5 bits; conditional E-value: 6e-06
EEEEES-TT-HHHHHHTTT...-SEEEEEESS--............---..TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 24 tvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............apl..pgvttiqgditdpetiekikealserkvdlvvsDga 96
t++Dlg+aPGg s++l+++l + ++v l p + ++i+g i++++ ++ +a+++ d+ g+
tr|Q38FU9|Q38FU9_TRYB2 237 TFLDLGCAPGGVSKYLVTELR--WSGIGVSLPVDrggiafdsswrnFPTskGRFELIEGSILEEDWQQ--HRAIKG--RDFYFVNGG 317
69*****************93..555555553333344555544343444468888899997776666..334444..455555555 PP
----S-HHHHHHHH.................HHHHHHHHHHHHHHEEEEEEEEEEEE- CS
FtsJ 97 pdvsgvhdldeylq.................sqLllaalelalkllkpggtfvlkifr 137
v+ + +e ++ + l ++l++a+k ++ gg++++ + r
tr|Q38FU9|Q38FU9_TRYB2 318 -AVQDYGQREEETSgdsgelptndghpvlpwFSFLVPQLQIAVKHVRDGGVIMFVFGR 374
.344444444444445677778888888887778888888888888888876655444 PP
>> tr|Q4GYA9|Q4GYA9_TRYB2 Arginine N-methyltransferase, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.0 5e-06 0.0029 19 82 .. 52 123 .. 35 238 .. 0.78
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 5e-06
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---...TT-EEEE--TTSSSHHHHHHHH CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........apl...pgvttiqgditdpetiekikea 82
f ++k v+D+g+++G s ++++ ga kv++vD + + + +t+iqg + + + ek+
tr|Q4GYA9|Q4GYA9_TRYB2 52 F-KDKVVLDVGCGTGILSMFAAKA-GA-RKVIGVDCSTVavqareivrD-NgfeDVITIIQGKVEEIQLDEKVDII 123
4.6789******************.88.99******9997766544431.13434555558877777766666544 PP
>> tr|Q580I8|Q580I8_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.4 0.4 0.0001 0.06 21 134 .. 135 380 .. 118 401 .. 0.71
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.0001
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---.TT-EEEE--TTSSSHHHHHH..HHHHH......... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........apl.pgvttiqgditdpetiekik..ealse......... 85
+g+tv D++++PG +++ +g++g v+ D++ + + ++v ++ +d t+ + + ++ +a
tr|Q580I8|Q580I8_TRYB2 135 RGETVWDVCCSPGMKLSFIADAIGEEGSAVGTDINLDrlfaarsvmkKHRaNNVCLFVADGTSFALRTAVAvaQA--Aklyrgksnt 219
7899********************99********88867877766643335777777666655555554441132..1346677777 PP
....................................................................................... CS
FtsJ 86 ....................................................................................... 85
tr|Q580I8|Q580I8_TRYB2 220 dgltaleerrlrymkkrraggaadssdgtvtrdeddqvalvftcdearkrlvqsgesanqkhygfdrvlvdaecshdgslahmflgg 306
888888888888888888888888888888888888888888888888888888888888888888877777777777777777777 PP
..........................SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE CS
FtsJ 86 ..........................rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlk 134
++ +l + Dg ++ + + + lq qL l+ l+ + ++l+pggt+v
tr|Q580I8|Q580I8_TRYB2 307 gtkrpfaghdgdadvasqainneqrmQRLNLSLPDGNEFANAEVRKVSPLQ-QLQLQLLTNGYAQLNPGGTLVYC 380
777777777777777777777766666677777777666655433333333.67777777777888888888743 PP
>> tr|Q388E0|Q388E0_TRYB2 Fibrillarin, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb10
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.8 0.0 4e-05 0.023 19 97 .. 66 149 .. 49 186 .. 0.81
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 4e-05
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlvvsDga 96
++pg tv+ lgaa G ++ +g++g+v+av + + ++++ i d + p++ +++ + l vd++ +D+a
tr|Q388E0|Q388E0_TRYB2 66 MEPGSTVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRsgrdleemsKRRSNIVPILEDARYPQKYRMLIPRL----VDCIFMDVA 148
5799*********************99988888877776666665554444899999***********999865....*******99 PP
- CS
FtsJ 97 p 97
tr|Q388E0|Q388E0_TRYB2 149 Q 149
3 PP
>> tr|Q582C3|Q582C3_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.7 0.0 1.1 6.5e+02 87 168 .. 61 141 .. 22 143 .. 0.70
2 ? 11.4 0.0 0.00021 0.12 21 111 .. 310 429 .. 289 489 .. 0.58
Alignments for each domain:
== domain 1 score: -0.7 bits; conditional E-value: 1.1
SEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHHHHGGGEEEEEEE---------- CS
FtsJ 87 kvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr...geeteallkqlkkfFekvsvvkPkssrsess 168
++l++s a g h++ ++ L++++ +l+l++++p v +f +++ ++++q+ ++F++ +++ +++r s+
tr|Q582C3|Q582C3_TRYB2 61 SISLILSEAA--RRGSHAVSRATMELLVEQSEQLQLRVVDPMW--VKNAFAtctNADEMRVIEQIIQKFHDKQCTDGETKRGLSQ 141
5667777777..6677777777777899999999999999873..3333333335666699999888888888888777776665 PP
== domain 2 score: 11.4 bits; conditional E-value: 0.00021
TT-EEEEES-TT-HHHHHHTTT..................-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHH....... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrl...............gakgkvvavDlqpmaplpgvttiqgditdpetiekikealse....... 85
pg++v+Dl+a+PG+ + +l + + +g +va D+ p + +++ +++ +
tr|Q582C3|Q582C3_TRYB2 310 PGDAVLDLCASPGNKTSLVLDYVsslrstslpssnphfH-HGCIVANDVSPP----------------RSRQLAQRLRNSsptvavt 379
8999***************99985555555555443332.256666666654................2222222211112222222 PP
................SSEEEEEE-------S-HHHHHHHH........H CS
FtsJ 86 ................rkvdlvvsDgapdvsgvhdldeylq........s 111
+k + ++ D + +g+ + d++ +
tr|Q582C3|Q582C3_TRYB2 380 qfhgqslpletgasggNKYNKILVDAPCSGEGRMQRDAMSWrmwhplrgL 429
22223333333344446666666665544444444444444555555552 PP
>> tr|Q388C9|Q388C9_TRYB2 Fibrillarin, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb10
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.0 7e-05 0.04 19 97 .. 142 225 .. 125 272 .. 0.81
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 7e-05
S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE--- CS
FtsJ 19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlvvsDga 96
++pg tv+ lgaa G ++ +g++g+v+av + + ++++ i d + p++ +++ + l vd++ +D+a
tr|Q388C9|Q388C9_TRYB2 142 MEPGSTVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRsgrdleemsKRRSNIVPILEDARYPQKYRMLIPRL----VDCIFMDVA 224
5799*********************99988888877776666665554444899999***********999865....*******99 PP
- CS
FtsJ 97 p 97
tr|Q388C9|Q388C9_TRYB2 225 Q 225
3 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 8561 (4332363 residues searched)
Passed MSV filter: 213 (0.0248803); expected 171.2 (0.02)
Passed bias filter: 191 (0.0223105); expected 171.2 (0.02)
Passed Vit filter: 33 (0.00385469); expected 8.6 (0.001)
Passed Fwd filter: 15 (0.00175213); expected 0.1 (1e-05)
Initial search space (Z): 8561 [actual number of targets]
Domain search space (domZ): 15 [number of targets reported over threshold]
# CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.04
# Mc/sec: 19170.71
//
[ok]