# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/FtsJ.hmm.txt
# target sequence database: proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: FtsJ [M=177]
Accession: PF01728.18
Description: FtsJ-like methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-56 191.6 0.0 3.4e-56 190.6 0.0 1.6 1 tr|F6WUN0|F6WUN0_XENTR pre-rRNA processing protein FTSJ
7.8e-53 179.6 0.0 1e-52 179.2 0.0 1.1 1 tr|F7AX52|F7AX52_XENTR Mitochondrial rRNA methyltransfe
3.7e-37 128.6 0.0 1.2e-36 126.9 0.0 1.9 1 tr|F6TZX1|F6TZX1_XENTR Cap methyltransferase 1 OS=Xenop
5.8e-37 127.9 0.0 1.3e-36 126.8 0.0 1.6 1 tr|A0A1B8XX56|A0A1B8XX56_XENTR Uncharacterized protein OS=Xenop
4.7e-32 111.9 0.0 4.6e-28 98.9 0.0 2.3 2 tr|F6YZK8|F6YZK8_XENTR Cap methyltransferase 2 OS=Xenop
2.6e-28 99.7 0.0 2.9e-28 99.6 0.0 1.0 1 tr|F7AV42|F7AV42_XENTR FtsJ RNA methyltransferase homol
6.5e-07 30.0 0.0 0.018 15.6 0.0 2.8 3 tr|F7DZT0|F7DZT0_XENTR Uncharacterized protein OS=Xenop
2.5e-06 28.2 0.0 6.1e-06 26.9 0.0 1.6 1 tr|F6RCC7|F6RCC7_XENTR NOP2/Sun RNA methyltransferase f
4.4e-05 24.1 0.1 8.1e-05 23.2 0.1 1.4 1 tr|F7D8B1|F7D8B1_XENTR NOP2 nucleolar protein OS=Xenopu
0.00056 20.5 0.0 0.00094 19.8 0.0 1.5 1 sp|Q66KI9|NSUN4_XENTR 5-methylcytosine rRNA methyltran
0.0028 18.2 0.0 0.0041 17.7 0.0 1.4 1 sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransfe
0.0035 17.9 0.0 0.0069 16.9 0.0 1.6 1 tr|F6TNA7|F6TNA7_XENTR NOP2/Sun RNA methyltransferase f
0.0038 17.8 0.0 0.0069 16.9 0.0 1.4 1 tr|F7C1D7|F7C1D7_XENTR HemK methyltransferase family me
0.0046 17.5 0.0 0.0086 16.6 0.0 1.4 1 tr|A0A1B8Y6P7|A0A1B8Y6P7_XENTR Uncharacterized protein (Fragmen
0.0073 16.9 0.0 0.017 15.7 0.0 1.6 1 tr|F6ZHI8|F6ZHI8_XENTR Uncharacterized protein OS=Xenop
------ inclusion threshold ------
0.017 15.6 0.1 0.038 14.5 0.1 1.7 1 tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicali
0.022 15.3 0.0 0.045 14.3 0.0 1.5 1 sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methylt
0.025 15.1 0.0 0.059 13.9 0.0 1.5 1 tr|A0A1B8XXG2|A0A1B8XXG2_XENTR Uncharacterized protein (Fragmen
0.032 14.8 0.1 0.07 13.7 0.0 1.5 1 tr|A0A1B8XSV6|A0A1B8XSV6_XENTR Uncharacterized protein (Fragmen
0.037 14.5 0.0 0.075 13.6 0.0 1.6 1 tr|F6TRH8|F6TRH8_XENTR Uncharacterized protein OS=Xenop
0.12 12.9 0.0 0.19 12.2 0.0 1.4 1 tr|F7BWE4|F7BWE4_XENTR Protein-L-isoaspartate O-methylt
0.13 12.8 0.1 0.16 12.5 0.1 1.3 1 tr|F6TSG1|F6TSG1_XENTR 3-hydroxybutyrate dehydrogenase
0.18 12.3 0.0 3.5 8.1 0.0 2.4 2 tr|F6PSG1|F6PSG1_XENTR Methyltransferase-like 15 OS=Xen
Domain annotation for each sequence (and alignments):
>> tr|F6WUN0|F6WUN0_XENTR pre-rRNA processing protein FTSJ3 OS=Xenopus tropicalis OX=8364 GN=ftsj3 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 190.6 0.0 3.3e-59 3.4e-56 1 177 [] 2 178 .. 2 178 .. 0.99
Alignments for each domain:
== domain 1 score: 190.6 bits; conditional E-value: 3.3e-59
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserk 87
yrsRsa+KL++++ kf+++ + ++ vDl+aaPGgw qv+++ + ++ +++vDl p++p+p+v t+q dit+++ +++++++l+ k
tr|F6WUN0|F6WUN0_XENTR 2 YRSRSAFKLIQLNRKFQFLPKARALVDLCAAPGGWLQVAAKFMPISSLIIGVDLVPIKPIPKVLTLQEDITTEACRQTVRKHLQTWK 88
9****************999**********************9779***************************************** PP
EEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE----------EEEEEE CS
FtsJ 88 vdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174
+d+v+ Dgap+v +++ d++ q++L l al+la+++l++gg f++kifr+++ ++ll l++fF+kv+ +kP++srses+e+f+vc
tr|F6WUN0|F6WUN0_XENTR 89 ADVVLNDGAPNVGANWTHDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWILQQFFKKVNSTKPQASRSESAEIFVVC 175
*************************************************************************************** PP
EEE CS
FtsJ 175 rgf 177
+gf
tr|F6WUN0|F6WUN0_XENTR 176 QGF 178
*98 PP
>> tr|F7AX52|F7AX52_XENTR Mitochondrial rRNA methyltransferase 2 OS=Xenopus tropicalis OX=8364 GN=mrm2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 179.2 0.0 9.7e-56 1e-52 1 175 [. 56 239 .. 56 240 .. 0.95
Alignments for each domain:
== domain 1 score: 179.2 bits; conditional E-value: 9.7e-56
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...........-SEEEEEESS-----TT-EEE.E--TTSSSHHHH CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlga........kgkvvavDlqpmaplpgvtti.qgditdpetiek 78
yr+Rsa+KLleid+k+++++pg++v+D+gaaPG+wsqv++++++ +g vv+vDl ++apl+g ++ + ditd +t++k
tr|F7AX52|F7AX52_XENTR 56 YRCRSAFKLLEIDNKHHILQPGHHVIDCGAAPGAWSQVAVEKVNSlgrdsaasAGFVVGVDLLNIAPLDGAVFLsNSDITDFDTQKK 142
9******************************************444444444459*************9999999************ PP
HHHHHHHSSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-STTHHHHHHHHGGGEEEEEEE------- CS
FtsJ 79 ikealserkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrs 165
i l k+d+++sD+ap+ +g++dld+ + ++++l+ lel+ ++l ggtf++k+++g+e++ + +l++ F++v+ vkPk+sr
tr|F7AX52|F7AX52_XENTR 143 IISVLPSGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSERVLLSGGTFLCKVWDGSEINLVRDRLRQRFQDVRTVKPKASRM 229
*************************************************************************************** PP
---EEEEEEE CS
FtsJ 166 esseeflvcr 175
es+e++l+++
tr|F7AX52|F7AX52_XENTR 230 ESAEVYLLAK 239
******9985 PP
>> tr|F6TZX1|F6TZX1_XENTR Cap methyltransferase 1 OS=Xenopus tropicalis OX=8364 GN=cmtr1 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.9 0.0 1.2e-39 1.2e-36 2 176 .. 224 439 .. 223 440 .. 0.85
Alignments for each domain:
== domain 1 score: 126.9 bits; conditional E-value: 1.2e-39
TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--............. CS
FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm............. 57
+R+a+K++++d+ f+ +f+ p + + D++a+PGg+s+++l+r + ++k ++++l +p+
tr|F6TZX1|F6TZX1_XENTR 224 LNRAAMKMANVDHVFDyMFTnPKDShgrpklkdkesellyFADVCAGPGGFSEYVLWRKKWHTKGFGMTLkGPNdfkledfyaapse 310
68*************9555534422566777777888888******************7558********88888888777764443 PP
..---TT-EEE........E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEE CS
FtsJ 58 ..aplpgvtti........qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggt 130
+p + gd+t+pe+i ++++++ + ++v+++++Dg+++v+g+++++e+l+ qLll+++ ++l+++++gg+
tr|F6TZX1|F6TZX1_XENTR 311 lfEP------YygeggvdgDGDVTRPENITAFRNFILDntehKGVHFMMADGGFSVEGQENIQEILSKQLLLCQFLVGLSVVRTGGH 391
3333......144445599***********88866555556599******************************************* PP
EEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
FtsJ 131 fvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
f++k+f+ ++ ++ +l++ l ++Fe++ ++kP +sr+++se+++vcrg
tr|F6TZX1|F6TZX1_XENTR 392 FICKTFDlFTPFSvGLIYLLYCCFERICLFKPLTSRPANSERYVVCRG 439
********999999********************************98 PP
>> tr|A0A1B8XX56|A0A1B8XX56_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 GN=XENTR_v90030351mg PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.8 0.0 1.2e-39 1.3e-36 2 176 .. 234 449 .. 233 450 .. 0.85
Alignments for each domain:
== domain 1 score: 126.8 bits; conditional E-value: 1.2e-39
TSHHHHHHHHHHHHH-.-S-.TT-E...............EEEES-TT-HHHHHHTTT...-SEEEEEES.S--..... CS
FtsJ 2 rsRsayKLleidekfk.lfk.pgkt...............vvDlgaaPGgwsqvllqrlgakgkvvavDl.qpm..... 57
+R+a+K++++d+ f+ +f+ p + + D++a+PGg+s+++l+r + ++k ++++l +p+
tr|A0A1B8XX56|A0A1B8XX56_XENTR 234 LNRAAMKMANVDHVFDyMFTnPKDShgrpklkdkesellyFADVCAGPGGFSEYVLWRKKWHTKGFGMTLkGPNdfkle 312
68*************9555534422566777777888888******************7558********888888887 PP
..........---TT-EEE........E--TTSSSHHHHHHHHHHH....SSEEEEEE-------S-HHHHHHHHHHHH CS
FtsJ 58 ..........aplpgvtti........qgditdpetiekikealse....rkvdlvvsDgapdvsgvhdldeylqsqLl 114
+p + gd+t+pe+i ++++++ + ++v+++++Dg+++v+g+++++e+l+ qLl
tr|A0A1B8XX56|A0A1B8XX56_XENTR 313 dfyaapselfEP------YygeggvdgDGDVTRPENITAFRNFILDntehKGVHFMMADGGFSVEGQENIQEILSKQLL 385
777644433333......144445599***********88866555556599*************************** PP
HHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEE CS
FtsJ 115 laalelalkllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrg 176
l+++ ++l+++++gg+f++k+f+ ++ ++ +l++ l ++Fe++ ++kP +sr+++se+++vcrg
tr|A0A1B8XX56|A0A1B8XX56_XENTR 386 LCQFLVGLSVVRTGGHFICKTFDlFTPFSvGLIYLLYCCFERICLFKPLTSRPANSERYVVCRG 449
************************999999********************************98 PP
>> tr|F6YZK8|F6YZK8_XENTR Cap methyltransferase 2 OS=Xenopus tropicalis OX=8364 GN=cmtr2 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 98.9 0.0 4.4e-31 4.6e-28 3 177 .] 94 302 .. 92 302 .. 0.85
2 ! 10.9 0.0 0.00045 0.48 98 177 .] 576 656 .. 494 656 .. 0.88
Alignments for each domain:
== domain 1 score: 98.9 bits; conditional E-value: 4.4e-31
SHHHHHHHHHHHHH--S-TT-E......EEEES-TT-HHHHHHTTT........-SEEEEEESS--....---TT-EEE........ CS
FtsJ 3 sRsayKLleidekfklfkpgkt......vvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm....aplpgvtti........ 66
+++++K ei k+ l+ + v+l+ aPG+++ l++ l++ ++++va +l+p+ + g+ +i
tr|F6YZK8|F6YZK8_XENTR 94 TQAWCKFHEIAWKYPLLPTNAVwnselnTVHLCEAPGAFIASLNHYLKTqddccDWNWVANTLNPYheanD---GLVMIaddrfian 177
5799***********8854422444455*******************66554445***********65440...4444444444466 PP
...........E--TTSSSHHHHHHHHHHH.SSEEEEEE-------S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STT CS
FtsJ 67 ...........qgditdpetiekikealse.rkvdlvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.gee 140
+gdi++ + + +++++s+ + v+lv++Dg++d++g +e l s L + + ++l +l++gg+fvlk+f+ +++
tr|F6YZK8|F6YZK8_XENTR 178 tlpwwyfgpdnTGDIMTIKYLNGLQQFISNmSAVHLVTADGSFDCQGDPGEQESLVSPLHYCEVVTCLLTLSKGGSFVLKMFTlFQH 264
667778889999***999999999998887788***************************************************888 PP
HH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 141 te.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
++ +l++ l+++F++v+++kP +s+ ++se+++vc+++
tr|F6YZK8|F6YZK8_XENTR 265 SSiNLMYLLNCCFSEVHIIKPGTSKAGNSEVYVVCLDY 302
888********************************985 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.00045
---S-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-.STTHH.HHHHHHGGGEEEEEEE----------EEEEEEEEE CS
FtsJ 98 dvsgvhdldeylqsqLllaalelalkllkpggtfvlkifr.geete.allkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
++s+ hd + ++++qL+ +al+ l+ gg++vl i+ +++++ ++l+ l ++F+ ++ P +s + + l+c gf
tr|F6YZK8|F6YZK8_XENTR 576 SISLLHDGEPVNELQLITLV-VCALQRLEMGGSLVLPILScFTRFTaGILYVLYHCFQFITFLCPTASLTPGTDTVLLCCGF 656
67888999999999998765.4669**************9888888799999***************998888888888765 PP
>> tr|F7AV42|F7AV42_XENTR FtsJ RNA methyltransferase homolog 1 OS=Xenopus tropicalis OX=8364 GN=ftsj1 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.6 0.0 2.8e-31 2.9e-28 1 72 [. 21 98 .. 21 99 .] 0.92
Alignments for each domain:
== domain 1 score: 99.6 bits; conditional E-value: 2.8e-31
TTSHHHHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS-----TT-EEEE--TTS CS
FtsJ 1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrl.......gakgkvvavDlqpmaplpgvttiqgditd 72
+r+Rsa+KLl++de+++lf+ ++++vDl+aaPG+wsqvl+++l g + k+vavDlq maplpgv +iqgdit+
tr|F7AV42|F7AV42_XENTR 21 WRARSAFKLLQLDEEYRLFQGVQRAVDLCAAPGSWSQVLSRKLrgseeqsG-QVKIVAVDLQAMAPLPGVIQIQGDITK 98
79*****************************************76665433.49***********************97 PP
>> tr|F7DZT0|F7DZT0_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 GN=loc100124841 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.6 0.0 1.7e-05 0.018 5 77 .. 29 112 .. 28 223 .. 0.76
2 ! 11.1 0.0 0.00041 0.43 17 77 .. 276 344 .. 264 358 .. 0.71
3 ? -1.2 0.0 2.5 2.6e+03 10 45 .. 357 401 .. 352 434 .. 0.78
Alignments for each domain:
== domain 1 score: 15.6 bits; conditional E-value: 1.7e-05
HHHHHHHHHHHH--S...-..TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.......---...TT-EEEE--TTSSSHH CS
FtsJ 5 sayKLleidekfklf...k..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.......apl...pgvttiqgditdpeti 76
s+ KLl + ek +++ g+ v++lga+ G ++ l++ ++v avD ++ + ++t++q+d+t+ +
tr|F7DZT0|F7DZT0_XENTR 29 SSAKLLSLEEKPEIIlllPclDGHSVLELGAGIGRYTGHLAKLA---SHVTAVDFMQNfieknqkD-NgfrGNITFLQADVTNLDLP 111
6789******999664432568899***************9993...78******66658655431.12335888888888876544 PP
H CS
FtsJ 77 e 77
+
tr|F7DZT0|F7DZT0_XENTR 112 N 112
4 PP
== domain 2 score: 11.1 bits; conditional E-value: 0.00041
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--...........---TT-EEEE--TTSSSHHH CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........aplpgvttiqgditdpetie 77
+ ++pg++vvD+g++ Gg ++++ g v+++Dl ++ +++p v++ gd t+ + e
tr|F7DZT0|F7DZT0_XENTR 276 N-LRPGQRVVDVGCGIGGGDFYMAKTYG--VEVLGMDLSSNmveiameraiiEKIPLVQFEIGDATKRSFSE 344
3.569**************999999976..69******5554988877644444455665566666665544 PP
== domain 3 score: -1.2 bits; conditional E-value: 2.5
HHHHHHH--S-TT-E.........EEEES-TT-HHHHHHTTT... CS
FtsJ 10 leidekfklfkpgkt.........vvDlgaaPGgwsqvllqrlga 45
l+i++k lf++ t + D +++ ws v + +++
tr|F7DZT0|F7DZT0_XENTR 357 LHINDKEALFRRFYTwlkpggkllITDYCCGERPWSPVFQEYVKQ 401
688888888887777777777788999999999999888877754 PP
>> tr|F6RCC7|F6RCC7_XENTR NOP2/Sun RNA methyltransferase family member 6 OS=Xenopus tropicalis OX=8364 GN=nsun6 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.0 5.8e-09 6.1e-06 21 150 .. 234 391 .. 221 393 .. 0.72
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 5.8e-09
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--........---TT-EEE........E--TTSSSHHHHHHHHHHH...... CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm........aplpgvtti........qgditdpetiekikealse...... 85
pg++++D +aaPGg + +++ ++ +g v+a+D + a +++ + + t+ ++
tr|F6RCC7|F6RCC7_XENTR 234 PGERILDMCAAPGGKTTHIATLMKDQGEVIAMDKIANkvekikhnA-----SVLklkcikafCFNSTKAVRDQNS-----Pseqgdg 310
8999*******************999*******9666554443332.....333333223334444333333222.....1334568 PP
.....SSEEEEEE-------S-HHHHHHHH..........HHHHHHHHHHHHHHEEEEEEEEEEEE-...STTHHHHHHHHGG CS
FtsJ 86 .....rkvdlvvsDgapdvsgvhdldeylq..........sqLllaalelalkllkpggtfvlkifr...geeteallkqlkk 150
+ +d ++ D +sg+ + ++++ L ++ ++ a++ll+pggt+v +++ +e+ e+++ +lk+
tr|F6RCC7|F6RCC7_XENTR 311 ppflpKSFDRILLDAP--CSGMGQRPNMVCpfslkeltsyQPLQRKLFTAAVELLRPGGTLVYSTCTvtlSENEEQVAWALKT 391
9999899999999985..777766666666666777776669********************888887778888888887776 PP
>> tr|F7D8B1|F7D8B1_XENTR NOP2 nucleolar protein OS=Xenopus tropicalis OX=8364 GN=nop2 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.2 0.1 7.7e-08 8.1e-05 21 132 .. 362 491 .. 344 513 .. 0.69
Alignments for each domain:
== domain 1 score: 23.2 bits; conditional E-value: 7.7e-08
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEE.....E--TTSSSHHHHHHHHHHHSSEEEEEE-------S- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvtti.....qgditdpetiekikealserkvdlvvsDgapdvsgv 102
++++v+D ++aPGg + +++q ++++g vva D++ ++++ v + + i + ++i++ l++ +d v+ D + +g+
tr|F7D8B1|F7D8B1_XENTR 362 ENERVLDMCCAPGGKTSYMAQLMKNTGIVVANDMNADRLRSVVGNLhrlgvTNCIISNYDGRQISKVLGG--FDRVLLDAPCSGTGI 446
5688*******************999**********9777666555544532223444455567777755..777777765544444 PP
HHHHHHHH...............HHHHHHHHHHHHHHEEEEEEEE CS
FtsJ 103 hdldeylq...............sqLllaalelalkllkpggtfv 132
++d +++ +L+l+a+ ++ ++gg +v
tr|F7D8B1|F7D8B1_XENTR 447 ISKDPAVKtnksvqdvqrcahiqKELILSAIDALDAQSQTGGFMV 491
444444333444444444444545888888888777777777766 PP
>> sp|Q66KI9|NSUN4_XENTR 5-methylcytosine rRNA methyltransferase NSUN4 OS=Xenopus tropicalis OX=8364 GN=nsun4 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.8 0.0 9e-07 0.00094 20 137 .. 194 333 .. 134 361 .. 0.79
Alignments for each domain:
== domain 1 score: 19.8 bits; conditional E-value: 9e-07
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----TT-EEEE--T.TSSSHHHHHHHHHHH.........SSEEEEEE---- CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgdi.tdpetiekikealse.........rkvdlvvsDgap 97
++g+ v+Dl+aaPGg + llq + + + a Dl + ++++ + + ++t+ k+ + ++ + d v+ D+
sp|Q66KI9|NSUN4_XENTR 194 QHGHSVLDLCAAPGGKTLALLQTENC-QYLAANDLSTSRSSRLHRVLRSYVpRAQRTEHKVCITSQDgrlwgdaeaNTYDRVLVDVP- 279
46899******************554.788889998885444444455555455555555553322345555555589*******95. PP
---S-HHHHHHHH.............HHHHHHHHHHHH.HHEEEEEEEEEEEE- CS
FtsJ 98 dvsgvhdldeylq.............sqLllaalelal.kllkpggtfvlkifr 137
+++ +h+l e + + Ll+a l +a + ++pgg +v ++
sp|Q66KI9|NSUN4_XENTR 280 CTTDRHSLLEEENnifhrirtkqrqmLPLLQAELLVAGlRAVRPGGEVVYSTCS 333
888887777777679999999999977999999999766*******99977665 PP
>> sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransferase 6 OS=Xenopus tropicalis OX=8364 GN=prmt6 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.7 0.0 3.9e-06 0.0041 6 85 .. 40 126 .. 36 211 .. 0.78
Alignments for each domain:
== domain 1 score: 17.7 bits; conditional E-value: 3.9e-06
HHHHHHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..........---.TT-EEEE--TTSSSHHHHHHHHH CS
FtsJ 6 ayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..........apl.pgvttiqgditdpetiekikeal 83
ayKL+ + ++ + + +gktv+D+ga++G s + +q ga + v+av +m + + ++v++++ + + e e++ +
sp|B0JYW5|ANM6_XENTR 40 AYKLALLRNHSS-L-QGKTVLDVGAGTGILSVFSVQA-GA-QAVYAVEASSMsqlacqvvksNDMeNKVKVLNSSVESAEIPEQVDAIV 124
8***99999999.6.8*********************.88.89******9996665555554333466666666666666666665555 PP
HH CS
FtsJ 84 se 85
se
sp|B0JYW5|ANM6_XENTR 125 SE 126
44 PP
>> tr|F6TNA7|F6TNA7_XENTR NOP2/Sun RNA methyltransferase family member 5 OS=Xenopus tropicalis OX=8364 GN=nsun5 PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.9 0.0 6.5e-06 0.0069 23 102 .. 230 315 .. 164 392 .. 0.78
Alignments for each domain:
== domain 1 score: 16.9 bits; conditional E-value: 6.5e-06
-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--......---...TT-EEE...E--TTSSSHHHHHHHHHHHSSEEEEEE---- CS
FtsJ 23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......apl...pgvtti...qgditdpetiekikealserkvdlvvsDgap 97
v+D +aaPG+ + l+ l++kgk++a+Dl + l gvt+ + d+++ + ++ +kv+ ++ D +
tr|F6TNA7|F6TNA7_XENTR 230 SCVIDACAAPGNKTSQLAAMLQNKGKLFAFDLDTKrlatmsT-LllrAGVTCQelaNQDFLTVSPEDPKY-----QKVSHILVDPSC 310
449***********9999999999********8875654431.123467777677777777777766333.....357777777664 PP
---S- CS
FtsJ 98 dvsgv 102
+ sg+
tr|F6TNA7|F6TNA7_XENTR 311 SGSGI 315
44444 PP
>> tr|F7C1D7|F7C1D7_XENTR HemK methyltransferase family member 1 OS=Xenopus tropicalis OX=8364 GN=hemk1 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.9 0.0 6.5e-06 0.0069 25 134 .. 123 254 .. 86 281 .. 0.79
Alignments for each domain:
== domain 1 score: 16.9 bits; conditional E-value: 6.5e-06
EEEES-TT-HHHHHHTTT...-SEEEEEESS--............---TT-EEEE--TTSSSHHHHHH....HHHHHSSEEEEEE-- CS
FtsJ 25 vvDlgaaPGgwsqvllqrlgakgkvvavDlqpm............aplpgvttiqgditdpetiekik....ealserkvdlvvsDg 95
v+++g++ G+ s llqrl + +++ a+D + + ++++++ di+ +++ + l ++ + +sD+
tr|F7C1D7|F7C1D7_XENTR 123 VLEVGCGSGAVSLSLLQRLPQ-ARITAIDKTKAavkltednavslGLQNQIQVLLLDILADPPDPLLMwgpvDVLVSNPPYISTSDI 208
99*****************87.********998777776654433333788888999988888886665555555557777777777 PP
-.----S-HHHHHHHH......HHHHHHHHHHHHHHEEEEEEEEEE CS
FtsJ 96 a.pdvsgvhdldeylq......sqLllaalelalkllkpggtfvlk 134
+ d + v+ d++ ++ ++ l++a +llkpgg + l+
tr|F7C1D7|F7C1D7_XENTR 209 SqLDPEIVKYEDHAALdggpdgMDVIRGILSFAPRLLKPGGDIFLE 254
74466666677766669************************87665 PP
>> tr|A0A1B8Y6P7|A0A1B8Y6P7_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v900306591m
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.6 0.0 8.2e-06 0.0086 17 60 .. 240 282 .. 227 321 .. 0.78
Alignments for each domain:
== domain 1 score: 16.6 bits; conditional E-value: 8.2e-06
--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--..--- CS
FtsJ 17 klfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl 60
++f ++ktv+D+g+++G s ++++ ga +kv++vD+ + + +
tr|A0A1B8Y6P7|A0A1B8Y6P7_XENTR 240 HIF-KDKTVLDVGCGTGILSMFAAKA-GA-KKVIGVDQSDIiyQAM 282
456.789*******************.88.9******988866333 PP
>> tr|F6ZHI8|F6ZHI8_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 1.6e-05 0.017 20 94 .. 40 111 .. 25 182 .. 0.78
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 1.6e-05
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHHHHHHHHHSSEEEEEE- CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiekikealserkvdlvvsD 94
kp + +vD+g+++G +q l+ + +kv+++D+ + ++ + t + +i + ++ + ++ l+++ vdl+ +
tr|F6ZHI8|F6ZHI8_XENTR 40 KPFQLAVDVGCGTGRSTQALAPYF---QKVIGIDVSESQLNvARKCTSHNNIYYQIAQAEELP-LEDASVDLINAG 111
57788******************8...58******9998776888888999966655544443.556777777655 PP
>> tr|Q6P623|Q6P623_XENTR Fibrillarin OS=Xenopus tropicalis OX=8364 GN=fbl PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.5 0.1 3.6e-05 0.038 10 99 .. 153 246 .. 144 323 .. 0.80
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 3.6e-05
HHHHHHH--S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS--.........---TT-EEEE--TTSSSHHHHHHHHHHHSS CS
FtsJ 10 leidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserk 87
l ++ + +kpg +v+ lgaa G ++ +g++g v+av + +++ ++ + d ++p + +++
tr|Q6P623|Q6P623_XENTR 153 LGGVDQIH-IKPGAKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRsgrdlinvaKKRTNIIPVIEDARHPHKYRMLVG-----M 233
55567888.89**********************************999777665543344555555999999999998885.....5 PP
EEEEEE---.--- CS
FtsJ 88 vdlvvsDga.pdv 99
vd+v +D+a pd
tr|Q6P623|Q6P623_XENTR 234 VDVVFADVAqPDQ 246
9*******94443 PP
>> sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis OX=8364 GN=nsun2 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.3 0.0 4.3e-05 0.045 20 137 .. 177 324 .. 145 342 .. 0.67
Alignments for each domain:
== domain 1 score: 14.3 bits; conditional E-value: 4.3e-05
-TT-EEEEES-TT-HHHHHHTTT..........-SEEEEEESS--.........---..TT-EEEE--TTSSSHHHHHHHHHHH.... CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga.......kgkvvavDlqpm.........apl..pgvttiqgditdpetiekikealse.... 85
+p ++++D +aaPG+ + + + l+a +g v+a D+ + + l p + +++ d + ++++ +
sp|Q28E61|NSUN2_XENTR 177 QPHHKILDMCAAPGSKTAQIIEMLHAdmnvpfpEGFVIANDVDNKrcyllvhqaKRLnsPCIMVVNHDASSIPRL-LVENN--Gsrev 261
47899*******************7766666666********776578887663223333444445444333222.22222..13344 PP
SSEEEEEE----..---S-HHHHHHHH......HHHHHHHHHHHH...HHEEEEEEEEEEEE- CS
FtsJ 86 rkvdlvvsDgap..dvsgvhdldeylq......sqLllaalelal...kllkpggtfvlkifr 137
+ d +++D+ d ++++++d ++ +qL ++++a+ ++l++gg +v ++
sp|Q28E61|NSUN2_XENTR 262 LYYDRILCDVPCsgDGTLRKNIDVWKKwttlnsLQLHGLQIRIATrgvEQLAEGGRMVYSTCS 324
579999999854443333445554444555554788888888876222588889988876665 PP
>> tr|A0A1B8XXG2|A0A1B8XXG2_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v900300652m
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.9 0.0 5.6e-05 0.059 21 57 .. 177 212 .. 166 231 .. 0.84
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 5.6e-05
TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS
FtsJ 21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57
+gk+v+D+g+ G + ++++++g+ ++vv++D+
tr|A0A1B8XXG2|A0A1B8XXG2_XENTR 177 RGKAVLDIGCNVGHVTLCVAKNMGP-SRVVGLDIDRS 212
7899********************8.*******9664 PP
>> tr|A0A1B8XSV6|A0A1B8XSV6_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v900296902m
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.7 0.0 6.7e-05 0.07 20 50 .. 166 197 .. 146 214 .. 0.80
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 6.7e-05
-TT-EEEEES-TT-HHHHHHTTT.....-SEEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlga..kgkvv 50
++g+ v+Dl+aaPGg + llq + ++++v
tr|A0A1B8XSV6|A0A1B8XSV6_XENTR 166 QHGHSVLDLCAAPGGKTLALLQTE-NclQQNIV 197
57899**********999999884.32434444 PP
>> tr|F6TRH8|F6TRH8_XENTR Uncharacterized protein OS=Xenopus tropicalis OX=8364 GN=LOC100485096 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.6 0.0 7.1e-05 0.075 20 91 .. 40 108 .. 22 166 .. 0.73
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 7.1e-05
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-----.TT-EEEE--TTSSSHHHHHHHHHHHSSEEEE CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl.pgvttiqgditdpetiekikealserkvdlv 91
kp + +vD+g+++G +q l+ ++ +kv+++D+ ++ + + +i + ++ + ++ l+++ vdl+
tr|F6TRH8|F6TRH8_XENTR 40 KPFELAVDVGCGTGRSTQALAPHF---QKVIGIDISDSQLCvARRFNSHENISYQIAQAEELP-LEDASVDLI 108
455669*****************7...58******9886554444444566644433333332.345556655 PP
>> tr|F7BWE4|F7BWE4_XENTR Protein-L-isoaspartate O-methyltransferase OS=Xenopus tropicalis OX=8364 GN=pcmt1 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.2 0.0 0.00018 0.19 18 57 .. 112 151 .. 102 220 .. 0.79
Alignments for each domain:
== domain 1 score: 12.2 bits; conditional E-value: 0.00018
-S-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS
FtsJ 18 lfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57
+++g +++D+g++ G + + ++ +g+kgkvv++D +
tr|F7BWE4|F7BWE4_XENTR 112 QLHEGAKALDVGSGSGILTACFSRMVGPKGKVVGIDHIKE 151
35699*******************************8553 PP
>> tr|F6TSG1|F6TSG1_XENTR 3-hydroxybutyrate dehydrogenase 2 OS=Xenopus tropicalis OX=8364 GN=bdh2 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.5 0.1 0.00015 0.16 34 90 .. 16 75 .. 2 158 .. 0.77
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 0.00015
HHHHHHTTT...-SEEEEEESS--..---...TT-EEEE--TTSSSHHHHHHHHHHHSSEEE CS
FtsJ 34 gwsqvllqrlgakgkvvavDlqpm..apl...pgvttiqgditdpetiekikealserkvdl 90
++s l ++++++v+a D+++ + l +g++t d+t++++iek+ + +++ vd+
tr|F6TSG1|F6TSG1_XENTR 16 AFSGTLRAFVNEGAQVIATDINETklKELeayKGIQTRVLDVTKKDQIEKLCKEIDR--VDV 75
57777777777789*********9663334458999999999999999998887755..443 PP
>> tr|F6PSG1|F6PSG1_XENTR Methyltransferase-like 15 OS=Xenopus tropicalis OX=8364 GN=mettl15 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.1 0.0 0.0033 3.5 20 57 .. 60 96 .. 48 139 .. 0.84
2 ? 1.7 0.0 0.3 3.2e+02 115 140 .. 269 294 .. 184 306 .. 0.83
Alignments for each domain:
== domain 1 score: 8.1 bits; conditional E-value: 0.0033
-TT-EEEEES-TT-HHHHHHTTT...-SEEEEEESS-- CS
FtsJ 20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm 57
++g+t++Dl ++ Gg + +l+r + kv+a+D p
tr|F6PSG1|F6PSG1_XENTR 60 QEGQTILDLTFGAGGHTTSILKRAS-NIKVLALDRDPA 96
3899*******************76.5******98876 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.3
HHHHHHHHHHEEEEEEEEEEEE-STT CS
FtsJ 115 laalelalkllkpggtfvlkifrgee 140
a l++a + l+pgg +v+ f++ e
tr|F6PSG1|F6PSG1_XENTR 269 HAGLSTAETFLRPGGRLVVISFHSLE 294
56678888899999999998888554 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (177 nodes)
Target sequences: 24182 (11782085 residues searched)
Passed MSV filter: 608 (0.0251427); expected 483.6 (0.02)
Passed bias filter: 537 (0.0222066); expected 483.6 (0.02)
Passed Vit filter: 61 (0.00252254); expected 24.2 (0.001)
Passed Fwd filter: 23 (0.000951121); expected 0.2 (1e-05)
Initial search space (Z): 24182 [actual number of targets]
Domain search space (domZ): 23 [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.09
# Mc/sec: 23171.43
//
[ok]