# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.1e-100 334.4 0.1 2.1e-99 332.9 0.1 1.6 1 tr|C3Y0D5|C3Y0D5_BRAFL tRNA (adenine(58)-N(1))-methyltransfe
2.2e-12 47.8 0.0 2.9e-12 47.5 0.0 1.1 1 tr|C3Y0B5|C3Y0B5_BRAFL Uncharacterized protein (Fragment) OS
3.5e-05 24.3 0.0 5.1e-05 23.7 0.0 1.2 1 tr|C3XZF6|C3XZF6_BRAFL Uncharacterized protein OS=Branchiost
0.00032 21.1 0.0 0.00077 19.9 0.0 1.5 2 tr|C3XXW9|C3XXW9_BRAFL Uncharacterized protein (Fragment) OS
0.00046 20.6 0.0 0.0074 16.7 0.0 2.0 2 tr|C3Z9J1|C3Z9J1_BRAFL Uncharacterized protein OS=Branchiost
0.00088 19.7 0.0 0.0062 16.9 0.0 1.9 2 tr|C3Y0Q2|C3Y0Q2_BRAFL Uncharacterized protein OS=Branchiost
------ inclusion threshold ------
0.16 12.3 0.0 0.2 12.0 0.0 1.3 1 tr|C3ZE13|C3ZE13_BRAFL Uncharacterized protein OS=Branchiost
0.19 12.0 3.1 0.26 11.6 2.3 1.6 1 tr|C3XZ61|C3XZ61_BRAFL Uncharacterized protein OS=Branchiost
0.43 10.9 2.0 0.5 10.7 2.0 1.1 1 tr|C3YCS2|C3YCS2_BRAFL Uncharacterized protein OS=Branchiost
Domain annotation for each sequence (and alignments):
>> tr|C3Y0D5|C3Y0D5_BRAFL tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Branchiostoma floridae
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 332.9 0.1 6.5e-103 2.1e-99 1 246 [. 64 292 .. 64 293 .. 0.93
Alignments for each domain:
== domain 1 score: 332.9 bits; conditional E-value: 6.5e-103
GCD14 1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefre 87
g+vy l+ptPeLWtl+Lphrtqi+yt+Dis+++ +L+lkpGsvvvesGtGsgs+sha++rt+aPtGhl+tfefh+qraekareef +
tr|C3Y0D5|C3Y0D5_BRAFL 64 GYVYALHPTPELWTLTLPHRTQIVYTTDISMLTLQLDLKPGSVVVESGTGSGSVSHAVIRTIAPTGHLYTFEFHQQRAEKAREEFSD 150
89************************************************************************************* PP
GCD14 88 helsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevll 174
h+ls+lvtvthr+vc++Gf ++s+++DavfLDlP+Pwea+ +a+ alkk ggrlCsfsPC+eq+qrtc++Lr++gf++i+t+e ll
tr|C3Y0D5|C3Y0D5_BRAFL 151 HGLSNLVTVTHRNVCTDGF--GLSDVADAVFLDLPSPWEAVASAKLALKKAGGRLCSFSPCVEQIQRTCDKLRSHGFCDITTIECLL 235
*******************..99999************************************************************* PP
GCD14 175 rtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvselkghtgyLtfat 246
rt++vr++ l+e dl++ + ++++ ++ ++ ++ks+ P +++ ghtg+Ltfat
tr|C3Y0D5|C3Y0D5_BRAFL 236 RTFDVRTIALPEPDLGQPDSCVQ-------TRHEGSETAQSFTFKSAV--------PPKDMPGHTGFLTFAT 292
***************98765443.......233334444555566655........99*************8 PP
>> tr|C3Y0B5|C3Y0B5_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_216969 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.5 0.0 9.2e-16 2.9e-12 21 178 .. 76 242 .. 58 245 .. 0.78
Alignments for each domain:
== domain 1 score: 47.5 bits; conditional E-value: 9.2e-16
GCD14 21 tqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefr....ehel......sqlvtvt 97
+ i + ++ + L++ pG v+e GtGsg+++ ++r+v+ tG++ +f+ e+ ++a+ ++r + +l ++vt +
tr|C3Y0B5|C3Y0B5_BRAFL 76 AAIPHPKNNNTALCLLDVSPGDWVLECGTGSGAMTLFLSRAVGVTGRVISFDSKEDHLNRAKRNYRlwmdSWKLshetdwPDNVTFH 162
5555555556667789*********************************************9999855442233444344679**** PP
GCD14 98 hrDvckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgftei..etlevllrtye 178
+ Dv + ++v++ D fLD+ +P + + + k g ++ + + qv + + +++ + ++lev r++
tr|C3Y0B5|C3Y0B5_BRAFL 163 QADVINAT--DKVKHLLDGAFLDMLTPNIGLRAVLPII-KPGKVIACHIVNMTQVVDLVASILKHQLPVVveQVLEVEHRNWL 242
*****986..59*******************9999999.77778888888888887777777666665442357888888886 PP
>> tr|C3XZF6|C3XZF6_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_260634 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.7 0.0 1.6e-08 5.1e-05 35 151 .. 151 268 .. 142 289 .. 0.73
Alignments for each domain:
== domain 1 score: 23.7 bits; conditional E-value: 1.6e-08
GCD14 35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLD 120
++++ pGs+v+ G+ sg+ + ++ v+P G ++++ef ++ + + + +++ ++ D+ + + + + g vD++f D
tr|C3XZF6|C3XZF6_BRAFL 151 QIHMMPGSKVLYLGAASGTTVSHVSDLVGPEGLVYAVEFSHRSGRD-LLNVAKKR--TNIIPIIEDARhPHKY-RMLVGMVDTIFAD 233
67899***************9******************7644433.33333333..3333334455524556.5677********* PP
GCD14 121 lPaPwea...iphaakalkkeggrlCsf.sPCieq 151
+ +P++ +a + lk++g + s + Ci+
tr|C3XZF6|C3XZF6_BRAFL 234 VAQPDQTrivAINAHNFLKNDGHFVISIkANCIDS 268
****9863212367778888888777762568875 PP
>> tr|C3XXW9|C3XXW9_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_268147 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.9 0.0 2.4e-07 0.00077 42 120 .. 99 180 .. 88 185 .. 0.84
2 ? -2.2 0.0 1.3 4.2e+03 25 50 .. 186 211 .. 182 217 .. 0.81
Alignments for each domain:
== domain 1 score: 19.9 bits; conditional E-value: 2.4e-07
GCD14 42 svvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtv...thrDvckeGf.deevsgkvDavfLD 120
v +e Gt g s i r ++P +l t+e q a+ a e + +l++ vtv + Dv e + +v ++D vfLD
tr|C3XXW9|C3XXW9_BRAFL 99 QVCLEMGTSCGYTSVRIGRLLGPGARLLTLEPNPQLAKVAEEMVQLAGLQDKVTVitaDTDDVIPELTkKYDV-TDIDIVFLD 180
5789*********************************************887776111456777665546677.899*****9 PP
== domain 2 score: -2.2 bits; conditional E-value: 1.3
GCD14 25 ytaDisliimkLelkpGsvvvesGtG 50
y+ D+ li + lk+G vvv G
tr|C3XXW9|C3XXW9_BRAFL 186 YIRDLKLIEEHGLLKNGFVVVTEQIG 211
78899999999999999999876655 PP
>> tr|C3Z9J1|C3Z9J1_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_287036 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.7 0.0 2.3e-06 0.0074 42 120 .. 106 187 .. 96 190 .. 0.84
2 ? 1.7 0.0 0.084 2.7e+02 23 45 .. 191 213 .. 188 216 .. 0.91
Alignments for each domain:
== domain 1 score: 16.7 bits; conditional E-value: 2.3e-06
GCD14 42 svvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsq...lvtvthrDvckeGf.deevsgkvDavfLD 120
+ +e Gt g + iar ++P +l t+e + a are + +l++ ++++ Dv +e + +v k D vfLD
tr|C3Z9J1|C3Z9J1_BRAFL 106 TTCLELGTYCGYSAVRIARNLSPSARLITIEVNPDYAAVAREVVKLAGLQDkieVINLDSADVIRELKtKYDV-TKLDLVFLD 187
567899*******************************************762335666778888776646677.899****99 PP
== domain 2 score: 1.7 bits; conditional E-value: 0.084
GCD14 23 ilytaDisliimkLelkpGsvvv 45
ly+ Di li + lk+Gsvv
tr|C3Z9J1|C3Z9J1_BRAFL 191 YLYIRDIKLIEEEKLLKKGSVVF 213
59******************995 PP
>> tr|C3Y0Q2|C3Y0Q2_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_284774 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.9 0.0 0.15 4.9e+02 131 153 .. 28 51 .. 24 74 .. 0.77
2 ! 16.9 0.0 1.9e-06 0.0062 35 89 .. 73 127 .. 64 180 .. 0.80
Alignments for each domain:
== domain 1 score: 0.9 bits; conditional E-value: 0.15
GCD14 131 aakal.kkeggrlCsfsPCieqvq 153
+++a+ + + g C fsP ++ q
tr|C3Y0Q2|C3Y0Q2_BRAFL 28 VFDAMkQVDRGNYCRFSPYMDSPQ 51
45666445889*******988766 PP
== domain 2 score: 16.9 bits; conditional E-value: 1.9e-06
GCD14 35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehe 89
k +l++Gs++++ G Gsg l+ +a v+PtG+ +++ ++ ++ ++ + ++++
tr|C3Y0Q2|C3Y0Q2_BRAFL 73 KDHLQEGSRALDVGSGSGYLTACMALMVGPTGKAVGIDHIDELVNMSIANVNKEH 127
55789******************************99999998888887776655 PP
>> tr|C3ZE13|C3ZE13_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_65542 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 6.3e-05 0.2 37 87 .. 3 53 .. 1 128 [. 0.84
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 6.3e-05
GCD14 37 elkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefre 87
+l +G+ v++ G G+g a+a+ v+ +Gh+ ++ e++ e+ar
tr|C3ZE13|C3ZE13_BRAFL 3 QLLEGTHVLDLGSGAGHDCFALAKLVGEKGHVTGVDMTEEQLEFARSYIDY 53
5778*****************************************975444 PP
>> tr|C3XZ61|C3XZ61_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_117877 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 2.3 8.3e-05 0.26 151 222 .. 84 156 .. 81 185 .. 0.72
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 8.3e-05
GCD14 151 qvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkr.iekakrrkaskdakvedkssk 222
qvq +++ + g+ +e e +++y r+++ + + +++ l +n ++r +k+k++k++++ k k+s+
tr|C3XZ61|C3XZ61_BRAFL 84 QVQAVWQHVMQNGYAPMEPCEARTNHYRRRHHSWDRRSASKDSLSSNAKRRkRTKRKKHKKKRNRKNAAKHSD 156
9***********************************9998888877654430333333333333333333333 PP
>> tr|C3YCS2|C3YCS2_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_90818 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 2.0 0.00016 0.5 157 224 .. 54 126 .. 36 153 .. 0.54
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00016
GCD14 157 eaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks.....s 224
++Lre + + + ev +r+ + r++k+++ dl + r + ++++ ++++ +r++ ++++e+++
tr|C3YCS2|C3YCS2_BRAFL 54 QNLREVKIRQEDLREVKIRQDDLREVKIRQDDLRMLRSQAKKQQPVKNQVKRQQVVKKESENQRMVKnlpmaM 126
4455555555555566666666666666666665555555544444444444333333333322222344442 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 1407 (0.0492958); expected 570.8 (0.02)
Passed bias filter: 975 (0.0341602); expected 570.8 (0.02)
Passed Vit filter: 102 (0.00357368); expected 28.5 (0.001)
Passed Fwd filter: 20 (0.000700722); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.44u 0.02s 00:00:00.46 Elapsed: 00:00:00.15
# Mc/sec: 21815.18
//
[ok]