# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-72 243.4 0.0 3.7e-72 243.1 0.0 1.1 1 tr|G5EGR8|G5EGR8_CAEEL tRNA (adenine(58)-N(1))-methyltransfe
0.00077 19.4 0.0 0.0012 18.7 0.0 1.3 1 sp|Q22053|FBRL_CAEEL rRNA 2'-O-methyltransferase fibrillar
------ inclusion threshold ------
0.042 13.7 1.0 0.078 12.8 1.0 1.5 1 tr|Q9N3T7|Q9N3T7_CAEEL Uncharacterized protein OS=Caenorhabd
0.069 13.0 0.0 0.091 12.6 0.0 1.2 1 sp|Q27873|PIMT_CAEEL Protein-L-isoaspartate O-methyltransf
Domain annotation for each sequence (and alignments):
>> tr|G5EGR8|G5EGR8_CAEEL tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Caenorhabditis elegans
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 243.1 0.0 7.5e-76 3.7e-72 1 246 [. 67 306 .. 67 307 .. 0.90
Alignments for each domain:
== domain 1 score: 243.1 bits; conditional E-value: 7.5e-76
GCD14 1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefre 87
g+vy+l+pt +LWt aLp rtqilytaD + i L+ kpGsv++esGtGsgslshaia tvaPtGhl+t + e+r++k +eef+
tr|G5EGR8|G5EGR8_CAEEL 67 GYVYILRPTSDLWTRALPRRTQILYTADCAQILSLLDAKPGSVICESGTGSGSLSHAIALTVAPTGHLYTHDIDETRTHKVLEEFKV 153
89************************************************************************************* PP
GCD14 88 helsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaakal.kkeggrlCsfsPCieqvqrtceaLrelgfteietlevl 173
h+l +++t +r+vc++Gf +v++ +D vfLD+PaPweaip aak + + +ggrl sfsPC+eqvqr+c a+++ gf+ iet+e+
tr|G5EGR8|G5EGR8_CAEEL 154 HGLGSVTTAVVRNVCTSGF--HVENAADGVFLDVPAPWEAIPFAAKSIfRARGGRLVSFSPCLEQVQRACLAMAAAGFVSIETIELV 238
*******************..999*******************999998************************************** PP
GCD14 174 lrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks...stevllkPvselkghtgyLtfat 246
+ ++ ++ ++++++e+ + + +rk + d ++ ++ss++ t ++ P +htgyLt at
tr|G5EGR8|G5EGR8_CAEEL 239 PEQKKIVSQHRQTLEEFEELGDAYPK-------ERKRNVDGTIVEQSSSAiprITIAIVYP-YSQPTHTGYLTHAT 306
99988888888887777776666543.......4455555555555555545445566777.56789******997 PP
>> sp|Q22053|FBRL_CAEEL rRNA 2'-O-methyltransferase fibrillarin OS=Caenorhabditis elegans OX=6239 GN=fib-1 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.7 0.0 2.4e-07 0.0012 36 151 .. 186 302 .. 176 340 .. 0.70
Alignments for each domain:
== domain 1 score: 18.7 bits; conditional E-value: 2.4e-07
GCD14 36 LelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlPa 123
++kpG++ + G+ sg+ + + v+P G ++++ef ++ + + ++ +v + D+ + + + + g vD +f D+ +
sp|Q22053|FBRL_CAEEL 186 THIKPGTKLLYLGAASGTTVSHCSDVVGPEGIVYAVEFSHRSGRDLLG-VAKK--RPNVVPIVEDARhPHKY-RMLVGMVDVIFSDVAQ 270
579***************9999****************7644433333.3332..33444445566624555.5677************ PP
GCD14 124 Pwea...iphaakalkkeggrlCsf.sPCieq 151
P++a +a + l++ g + s + Ci+
sp|Q22053|FBRL_CAEEL 271 PDQArivALNAQNFLRNGGHAVISIkANCIDS 302
**994322355666766655555542567765 PP
>> tr|Q9N3T7|Q9N3T7_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_Y47G6A.13 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.8 1.0 1.6e-05 0.078 103 232 .. 212 344 .. 196 412 .. 0.76
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 1.6e-05
GCD14 103 keGf.deevsgkvDavfLDlPaPweaiphaakal..kkeggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrksklee 186
++G d+ v v+L l Pw +++ ++ + kk+ l f + ++ e Lr l + + e ++ + ++l+
tr|Q9N3T7|Q9N3T7_CAEEL 212 EQGRcDDLVAMIYSIVYLTLGLPWSNLKDEKEIMsmKKSTKDLALFEDLPDELKSIFEYLRTLSYADRPNYEKIYNLLMAAITRLKI 298
55652333444456689**********999888764777788******************************999998888777776 PP
GCD14 187 idlaekrleenerkriekakrrkaskdakvedkssksstevllkPv 232
l + e++e +r+ ka++++++k++k ++++++ ++e+ + +
tr|Q9N3T7|Q9N3T7_CAEEL 299 NFLDPYEWEDDEMERMAKAEKEEKEKEEKEKKEKENKENELSADSM 344
6666666666666666666655555444444444443334333333 PP
>> sp|Q27873|PIMT_CAEEL Protein-L-isoaspartate O-methyltransferase OS=Caenorhabditis elegans OX=6239 GN=pcm-1 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 1.8e-05 0.091 37 93 .. 75 131 .. 64 181 .. 0.82
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 1.8e-05
GCD14 37 elkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsql 93
+l G+++++ G Gsg l+ +a v+ G + +e+ q +e + ++ r+h+ +ql
sp|Q27873|PIMT_CAEEL 75 HLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSEKNIRKHHSEQL 131
6889**********************************************9987553 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 20008 (8229220 residues searched)
Passed MSV filter: 1301 (0.065024); expected 400.2 (0.02)
Passed bias filter: 826 (0.0412835); expected 400.2 (0.02)
Passed Vit filter: 101 (0.00504798); expected 20.0 (0.001)
Passed Fwd filter: 33 (0.00164934); expected 0.2 (1e-05)
Initial search space (Z): 20008 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.38u 0.01s 00:00:00.39 Elapsed: 00:00:00.13
# Mc/sec: 15635.52
//
[ok]