# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/GCD14.hmm.txt # target sequence database: proteomes/Dictyostelium_discoideum.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: GCD14 [M=247] Accession: PF08704.9 Description: tRNA methyltransferase complex GCD14 subunit Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-110 367.4 0.0 3.2e-110 367.1 0.0 1.1 1 sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransfe 9.3e-05 21.7 0.1 0.00018 20.8 0.1 1.3 1 sp|Q55CW0|FBRL_DICDI rRNA 2'-O-methyltransferase fibrillar 0.0011 18.3 1.0 0.017 14.3 1.0 2.3 2 tr|Q55BS3|Q55BS3_DICDI Uncharacterized protein OS=Dictyostel 0.0025 17.1 1.7 0.0025 17.1 1.7 2.0 2 tr|Q54SY4|Q54SY4_DICDI Uncharacterized protein OS=Dictyostel ------ inclusion threshold ------ 0.16 11.1 1.7 0.23 10.6 1.7 1.2 1 tr|Q55E89|Q55E89_DICDI Uncharacterized protein OS=Dictyostel 0.23 10.6 2.9 0.4 9.8 2.9 1.3 1 tr|Q54RT4|Q54RT4_DICDI Uncharacterized protein OS=Dictyostel 0.3 10.2 3.3 0.47 9.6 3.3 1.2 1 tr|Q7KWT0|Q7KWT0_DICDI Rab GTPase OS=Dictyostelium discoideu 0.39 9.9 7.4 0.57 9.3 7.4 1.2 1 tr|Q54JB2|Q54JB2_DICDI Uncharacterized protein OS=Dictyostel 0.71 9.0 6.1 0.77 8.9 6.1 1.1 1 tr|Q55EZ3|Q55EZ3_DICDI Uncharacterized protein OS=Dictyostel 0.72 9.0 7.1 0.77 8.9 7.1 1.0 1 tr|Q75JG2|Q75JG2_DICDI Uncharacterized protein OS=Dictyostel 0.85 8.8 7.8 1.1 8.5 7.8 1.1 1 tr|Q54U11|Q54U11_DICDI Uncharacterized protein OS=Dictyostel 0.89 8.7 6.4 1.5 7.9 6.4 1.3 1 tr|Q54WJ7|Q54WJ7_DICDI Uncharacterized protein OS=Dictyostel 1.1 8.5 9.4 0.13 11.4 4.5 1.9 2 tr|Q55E49|Q55E49_DICDI Uncharacterized protein OS=Dictyostel 1.7 7.8 6.2 2.3 7.3 6.2 1.1 1 tr|Q54FS6|Q54FS6_DICDI Uncharacterized protein OS=Dictyostel 1.7 7.7 4.5 2.7 7.1 4.5 1.3 1 sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS 1.7 7.7 5.2 1.1 8.4 0.7 2.2 2 tr|Q54BW0|Q54BW0_DICDI Uncharacterized protein (Fragment) OS 1.8 7.7 7.5 3.1 6.9 7.5 1.3 1 sp|Q55F19|CCNH_DICDI Putative cyclin-H OS=Dictyostelium di 1.9 7.6 8.3 3.1 6.9 8.3 1.3 1 tr|Q54T83|Q54T83_DICDI Uncharacterized protein OS=Dictyostel 1.9 7.6 6.7 2.4 7.3 6.7 1.2 1 tr|Q55BJ5|Q55BJ5_DICDI Uncharacterized protein OS=Dictyostel 2.1 7.5 6.1 3.4 6.8 6.1 1.3 1 tr|Q54W92|Q54W92_DICDI Uncharacterized protein OS=Dictyostel 2.1 7.5 4.8 4.5 6.4 4.8 1.5 1 tr|Q54CG1|Q54CG1_DICDI Uncharacterized protein OS=Dictyostel 2.5 7.2 7.3 4 6.5 7.3 1.3 1 tr|Q86HA3|Q86HA3_DICDI Uncharacterized protein OS=Dictyostel 2.7 7.1 6.9 4.6 6.3 6.9 1.3 1 tr|Q54TG7|Q54TG7_DICDI Uncharacterized protein OS=Dictyostel 3.1 6.9 6.0 5 6.2 6.0 1.4 1 tr|Q550I3|Q550I3_DICDI Uncharacterized protein OS=Dictyostel 3.5 6.7 8.2 3.9 6.6 8.2 1.0 1 sp|Q8MN60|Y9248_DICDI Putative uncharacterized protein DDB_ 4.6 6.4 9.4 5.8 6.0 9.4 1.1 1 tr|Q54U57|Q54U57_DICDI Uncharacterized protein OS=Dictyostel 5.3 6.2 15.8 0.073 12.3 3.2 2.2 2 tr|Q54D70|Q54D70_DICDI Uncharacterized protein OS=Dictyostel 5.6 6.1 12.7 0.25 10.5 5.4 2.0 2 tr|Q54NM1|Q54NM1_DICDI Uncharacterized protein OS=Dictyostel 6.2 5.9 7.5 7.6 5.6 7.5 1.3 1 tr|Q54N67|Q54N67_DICDI Uncharacterized protein OS=Dictyostel 7.7 5.6 7.2 12 4.9 7.2 1.4 1 tr|Q7KWM0|Q7KWM0_DICDI Uncharacterized protein OS=Dictyostel 7.9 5.6 9.2 7.5 5.7 9.2 1.0 1 sp|Q54QL5|Y5670_DICDI Putative uncharacterized protein DDB_ 8.7 5.4 8.4 16 4.5 8.4 1.5 1 sp|Q54HW2|H2AV1_DICDI Histone H2A.v1 OS=Dictyostelium disco 9 5.4 18.3 1.1 8.4 13.6 1.8 2 tr|Q55GE0|Q55GE0_DICDI Uncharacterized protein OS=Dictyostel 9.3 5.4 7.7 40 3.3 6.5 2.6 2 sp|Q54FQ3|PKS29_DICDI Probable polyketide synthase 29 OS=Di Domain annotation for each sequence (and alignments): >> sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideu # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 367.1 0.0 8.5e-113 3.2e-110 1 247 [] 62 308 .. 62 308 .. 0.94 Alignments for each domain: == domain 1 score: 367.1 bits; conditional E-value: 8.5e-113 GCD14 1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefreh 88 gf++v+a+tPeLW+++L+hrtqil++ Dis+ii++Lelk+Gs++vesGtGsgsls++iart+aP+Ghlftfefhe+r+++ar++f+++ sp|Q86JJ0|TRM61_DICDI 62 GFCHVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAPKGHLFTFEFHEERVKFARKDFKDN 149 8*************************************************************************************** PP GCD14 89 elsqlvtvthrDvc.keGf.deevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevll 174 +l+q++tvthrD+c keGf ++++++++DavfLDlP+Pw+ai++a++++ ++g++lCsfsPCieqvq+tc +L++++f+ei+t+evl+ sp|Q86JJ0|TRM61_DICDI 150 GLDQYITVTHRDACgKEGFlRQDINNDIDAVFLDLPSPWDAIENAIAVM-HDGSMLCSFSPCIEQVQNTCLKLADSKFQEIKTIEVLI 236 **************99*********************************.99************************************ PP GCD14 175 rtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvselkghtgyLtfatk 247 rt+++r +++ee++l++ ++++n++++ ++ + ++++ + ++ ++ ++++l+kP++e++ghtgyLtfa++ sp|Q86JJ0|TRM61_DICDI 237 RTFDTRLQEYEELNLTNPYIDNNNNNNNNN-NIEENRGKFEIGGIEGLKKDKLLSKPFTEARGHTGYLTFARY 308 **********************98873333.3333444455555556669*********************85 PP >> sp|Q55CW0|FBRL_DICDI rRNA 2'-O-methyltransferase fibrillarin OS=Dictyostelium discoideum OX=44689 GN=fbl PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.1 4.9e-07 0.00018 35 152 .. 166 284 .. 162 305 .. 0.69 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 4.9e-07 GCD14 35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlP 122 ++++kpGs+v+ G+ sg+ + ++ v+PtG ++ +e ++ + + + +++ +v D+ + + + + g vD vf D+ sp|Q55CW0|FBRL_DICDI 166 EIHIKPGSKVLYIGAASGTTISHVSDIVGPTGVVYGIELSHRPGRDLIG-MAKKRT--NVIPIIEDARhPQKY-RMLIGMVDVVFADVA 250 6789***************9999***************96544443333.333332..233333444413445.4566*********** PP GCD14 123 aPwea..i.phaakalkkeggrlCsf.sPCieqv 152 +P +a + ++ a lk+eg + s + Ci+ sp|Q55CW0|FBRL_DICDI 251 QPNQAqiVaQNSAYFLKNEGHFIISIkASCIDST 284 ***9943312333456999988888735688764 PP >> tr|Q55BS3|Q55BS3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0191018 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 1.0 4.5e-05 0.017 115 232 .. 169 281 .. 158 310 .. 0.80 2 ? 1.1 0.0 0.49 1.9e+02 102 155 .. 650 703 .. 638 721 .. 0.81 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 4.5e-05 GCD14 115 DavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkr 201 ++vf+ +P + i+ + + ++++ l s + q t+ r + f+++ l +++v ++ + +d+ +++ ++n+++ tr|Q55BS3|Q55BS3_DICDI 169 NSVFFSVPHKDANIKIFNSFIDQSNSSLISEKLNLLTSQSTTTSSRTTAFVKLANEKSLKAQWTVNDESNQSTDVNNSNNNNNNNN- 254 689***********999999999999****9999***********************************99999988877777666. PP GCD14 202 iekakrrkaskdakvedkssksstevllkPv 232 ++++++++++ ++s++ +v +kP tr|Q55BS3|Q55BS3_DICDI 255 ----NNNNNNNNNNNINNSNSLAPKVTSKPN 281 ....333344444555556666778888886 PP == domain 2 score: 1.1 bits; conditional E-value: 0.49 GCD14 102 ckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrt 155 k Gf++ + v ++f+++P+ + i+ l ++ f +eqv++ tr|Q55BS3|Q55BS3_DICDI 650 SKVGFKSARKAPVQTIFVEIPTTQNQIKFQQILLSGDKDLTFGFDYKLEQVKHF 703 578999999999***************998888877777888899999999875 PP >> tr|Q54SY4|Q54SY4_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0218362 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.3 1.3 4.9e+02 198 231 .. 56 90 .. 35 100 .. 0.53 2 ! 17.1 1.7 6.7e-06 0.0025 113 227 .. 154 265 .. 149 279 .. 0.75 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 1.3 GCD14 198 erkriekakrrkaskdakvedkssks....stevllkP 231 +++ k ++++++++++ e++++++ ++e++ kP tr|Q54SY4|Q54SY4_DICDI 56 NSN---KNEKSNNQHNDENEEENDDFeiydKDEIIYKP 90 222...22222222222222222222455588888888 PP == domain 2 score: 17.1 bits; conditional E-value: 6.7e-06 GCD14 113 kvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleener 199 + D v lPa + +i ha ++l+ + s e + ++ ++++f + + ++ lr+++ + k ++i+ +++ ++n++ tr|Q54SY4|Q54SY4_DICDI 154 QGDVVTGPLPAYDASIAHALTHLNA---TTETASTINEFIALQLNNAEDSDFEDGDNSNIKLRNFKNNQLKQKQINNNNNNNNDNKN 237 56777778999999********933...33345677788888999999*****************9999999999998887777777 PP GCD14 200 kriekakrrkaskdakvedkssksstev 227 ++ + ++++++++ ++++++ss+ + tr|Q54SY4|Q54SY4_DICDI 238 NSNRGCGSNNNNNNNNNNKNKNNSSNST 265 7666666666655555555555544433 PP >> tr|Q55E89|Q55E89_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0190191 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 1.7 0.00061 0.23 186 240 .. 36 95 .. 15 102 .. 0.45 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00061 GCD14 186 eidlaekrleenerkriekakrrkaskdakvedkssksstevllkPv.......selkghtg 240 i+ +e++ ++n++++ + ++++++++++ ++++++ ++ vl kP +e+ g g tr|Q55E89|Q55E89_DICDI 36 LINNFENNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNYVLFKPYgtdskclNETMGGLG 95 2222222222222222..22222223333333344444677888887555555455555555 PP >> tr|Q54RT4|Q54RT4_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0185272 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 2.9 0.0011 0.4 184 244 .. 327 386 .. 286 388 .. 0.52 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.0011 GCD14 184 leeidlaekrleenerkriekakrrka..skdakvedkssksstevllkPvselkghtgyLtf 244 ++++ ++++ ++n++++ ++ +++++ +++++ + ++++ + v kP + g t yL++ tr|Q54RT4|Q54RT4_DICDI 327 NTTTNTTNNNSNNNNNNNNNNNNNNNNnnNNNNNNNSNNNNLCNSVHYKP---VIGLTNYLIY 386 22333344444444444333333333311333333344444466677777...6778888875 PP >> tr|Q7KWT0|Q7KWT0_DICDI Rab GTPase OS=Dictyostelium discoideum OX=44689 GN=rabW PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 3.3 0.0013 0.47 150 225 .. 129 206 .. 125 215 .. 0.64 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0013 GCD14 150 eqvqrtceaLrelgfteietlevllrtyevrkskleei..dlaekrleenerkriekakrrkaskdakvedkssksst 225 +qv +e+L+ +++ +ev +++ ++++ +i d+ +++le +++++ ++ ++++++++++ ++k+++s++ tr|Q7KWT0|Q7KWT0_DICDI 129 DQVNLLIEQLNGIFNFNLNFIEVSAKKNINLEQSFITItnDMLNRYLEGSKNTTQNNNNNNNNNNNNNNNNKNNNSNN 206 688888889998878899*****9998766666554431256777788777776655555555555555555555333 PP >> tr|Q54JB2|Q54JB2_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0219316 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 7.4 0.0015 0.57 155 223 .. 11 80 .. 4 111 .. 0.62 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.0015 GCD14 155 tceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkri.ekakrrkaskdakvedkssks 223 ++++++ f + + l +l++ ++++k++ ++ + +++ ++n++++ ++ ++++++k+++ ++++ ++ tr|Q54JB2|Q54JB2_DICDI 11 KNNKINSKYFLKKRHLKILMKSNQIKKINNNNNNNNNNNNNNNNNNNNnNNNNNNNNNKNNNNNFNKINF 80 566788888999999**********999988877755555554444330333333333444444444333 PP >> tr|Q55EZ3|Q55EZ3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0268936 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 6.1 0.0021 0.77 181 233 .. 13 63 .. 3 79 .. 0.43 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0021 GCD14 181 kskleeidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvs 233 +++ ++i++ +++ ++n++++ ++ ++++++++ ++++++ ++++ ++ ++ tr|Q55EZ3|Q55EZ3_DICDI 13 TNNNNNININNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNIYTNFLK 63 2333344444333333333322222..22222222223333323444444444 PP >> tr|Q75JG2|Q75JG2_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0169522 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 7.1 0.0021 0.77 153 222 .. 16 84 .. 6 88 .] 0.51 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0021 GCD14 153 qrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssk 222 c+ L e + ++ l v ++ ++ + ++ + d +++ ++n++++ ++ ++++++++++ ++++++ tr|Q75JG2|Q75JG2_DICDI 16 DSECKSLFEGVYSDMINL-VIIKILNTENLEVLNNDNDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 84 456788888778877766.556666666666555555444444444443333333333333333333332 PP >> tr|Q54U11|Q54U11_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0281395 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 7.8 0.0028 1.1 168 237 .. 3 75 .. 1 84 [. 0.52 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0028 GCD14 168 etlevllrtyevrkskleeidlaekrleenerkriekakrrka...skdakvedkssksstevllkPvselkg 237 t+ + ++ ++ +++++ + +++ ++n++++ ++ +++++ +++++ ++++++ s+++ l+ ++ + tr|Q54U11|Q54U11_DICDI 3 LTISIYTKFSDASNNNIQFNNNNNNNNNNNNNNNNNNNNNNNNnnnNNNNNNNNNNNNNSNDISLNNDQNPTN 75 5777888888888888888777655555554444444333333111233333333333355555544444444 PP >> tr|Q54WJ7|Q54WJ7_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0205939 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 6.4 0.0041 1.5 178 242 .. 93 156 .. 83 158 .. 0.56 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0041 GCD14 178 evrkskleeidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvselkghtgyL 242 ++++++ ++ + +++ ++n++++ ++ ++ +++++ +d+ ++ ++++ P+++++ h g L tr|Q54WJ7|Q54WJ7_DICDI 93 NIKNENNNNNNNNNNNNNNNNNNNNNNNNQ-INNNNQINNDQINNNNNNINNCPIENIRNHLGKL 156 444444444444444433333333333333.334444445555666899999*********8865 PP >> tr|Q55E49|Q55E49_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0201713 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.1 4 1.5e+03 183 200 .. 63 80 .. 10 99 .. 0.45 2 ? 11.4 4.5 0.00035 0.13 137 206 .. 113 182 .. 96 219 .. 0.76 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 4 GCD14 183 kleeidlaekrleenerk 200 +++++ + +k+ e+ e+k tr|Q55E49|Q55E49_DICDI 63 NYNQLLECKKENEKLETK 80 222222221111111111 PP == domain 2 score: 11.4 bits; conditional E-value: 0.00035 GCD14 137 keggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekak 206 +e+ ++ + C+eq + ++++l +e++t+++ + +y+ ++++ i+l++++ ++n++++ ++ tr|Q55E49|Q55E49_DICDI 113 QEKDKIRQLITCLEQNEENNSTIKNLLENELKTIDLITEKYKNSLNTIDIIQLFNNNNNNNNNNNNNNNT 182 55667777889******99999999999*************************88877776665444332 PP >> tr|Q54FS6|Q54FS6_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0219590 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 6.2 0.0062 2.3 142 221 .. 30 112 .. 10 130 .. 0.61 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0062 GCD14 142 lCsfsPCieqvqrtceaLrelgfteietlevll...rtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkss 221 C f PC q + + ++ + i+++e+ + ++ +++i+ + ++ ++n++++ ++ ++++++++ + +++++ tr|Q54FS6|Q54FS6_DICDI 30 ECKFIPCCIQCISKDGEHHGHKTNCIDSMEISNilkMMNLFKNDIIPKIKQTDNNNNNNNNNNNNNNNNNNNNSNINNDNNDN 112 499***98887777777777788889999875311033344555556666555555555544444444333333333333333 PP >> sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum OX=44689 GN=gins # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.1 4.5 0.0072 2.7 159 224 .. 150 216 .. 143 223 .] 0.43 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0072 GCD14 159 Lrelgfteietlevll.r.tyevrkskleeidlaekrleenerkriekakrrka.skdakvedksskss 224 ++ ++f++ +++e+ r y ++l++i+ + + ++n+++ ++ +++++ +++++++ s+ ss sp|Q54BL9|PSF2_DICDI 150 VTTMEFKNFSMMEINKiRaSYVSGINDLNKIQNSDNDNNNNNNN--NNSNNNNNnNNSQQSQSASNASS 216 66788999999999641213333333444443322222222222..22222222022222333333333 PP >> tr|Q54BW0|Q54BW0_DICDI Uncharacterized protein (Fragment) OS=Dictyostelium discoideum OX=44689 GN=DDB0219778 PE=4 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.2 0.49 1.8e+02 151 238 .. 75 162 .. 71 165 .. 0.58 2 ? 8.4 0.7 0.003 1.1 175 231 .. 210 274 .. 186 289 .. 0.67 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.49 GCD14 151 qvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks.stevllkPvselk 236 q q t++++++l e t ++l ++ k l + + ++++++n+++ i+ + ++ k+ + + s++s t l P+ e++ tr|Q54BW0|Q54BW0_DICDI 75 QPQPTIQRVEQLINFET-TSHLDLSSINMNKYILGNNNNNNNNINNNNNNLINSFSFLSKCKKLTNLTMSGQStITSDKLLPILEMV 160 55666666665432222.234555666677777777777778888888887777776666555555555555322333445778888 PP GCD14 237 gh 238 gh tr|Q54BW0|Q54BW0_DICDI 161 GH 162 77 PP == domain 2 score: 8.4 bits; conditional E-value: 0.003 GCD14 175 rtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks........stevllkP 231 ty++++++ i+l+++ ++n+++ ++ + ++++++++++ ++s+ st +++ P tr|Q54BW0|Q54BW0_DICDI 210 STYDIKNKNNIIIKLTTNSNNNNNNNYNNNNNDNNNNNNNNISPNNSQNnlnnltstSTSTIITP 274 46888888888888877766666666666655555555555544444432444444455555555 PP >> sp|Q55F19|CCNH_DICDI Putative cyclin-H OS=Dictyostelium discoideum OX=44689 GN=cycH PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 7.5 0.0084 3.1 153 222 .. 207 276 .. 182 285 .. 0.46 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0084 GCD14 153 qrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssk 222 q + a +l++ ++ + ++++ +++ ++ + +++ ++n++++ ++ ++++++++++ ++++++ sp|Q55F19|CCNH_DICDI 207 QIIALACLNLNWDGFNMYCINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 276 3333344456667777777776666666655555555444444443333333333333222222222222 PP >> tr|Q54T83|Q54T83_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0204295 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 8.3 0.0082 3.1 155 224 .. 511 584 .. 491 600 .. 0.58 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0082 GCD14 155 tceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrka....skdakvedksskss 224 + ++ + f+ i+t+ +++ + +++ ++ + +++ ++n++++ ++ +++++ +++++ ++++++ss tr|Q54T83|Q54T83_DICDI 511 SFSEFDKNSFNSINTIGNNINNINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNnnnnNNNNNNNNNKNNSS 584 45678889999999998888877776666666555444444444443333333333111122233333333333 PP >> tr|Q55BJ5|Q55BJ5_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0216781 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 6.7 0.0064 2.4 176 244 .. 5 70 .. 1 73 [. 0.38 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0064 GCD14 176 tyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvselkghtgyLtf 244 +y+ +++ ++ + +++ ++n+++ + ++++++++++ ++++++ ++++++ se+ + L+f tr|Q55BJ5|Q55BJ5_DICDI 5 KYKSNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNIIIISGSEVISNGNLLIF 70 4444443333333333333322222...22222222333333333333445555555666665555555 PP >> tr|Q54W92|Q54W92_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0206309 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 6.1 0.0091 3.4 186 244 .. 282 340 .. 249 343 .. 0.54 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0091 GCD14 186 eidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvselkghtgyLtf 244 + + +++ ++n++++ ++ ++++++++++ e+ks+ ++ + k ++ k yL f tr|Q54W92|Q54W92_DICDI 282 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNENKSNIKYEKCICKNSRKDKNFFNYLEF 340 11112222222222222333333333344444444444677788888888888888887 PP >> tr|Q54CG1|Q54CG1_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0219810 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 4.8 0.012 4.5 149 222 .. 22 93 .. 19 111 .. 0.65 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.012 GCD14 149 ieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssk 222 i q+ ++ + ++ +i l + +++ + +e+i+l ++++++n++++ ++ ++++++++++ +++++k tr|Q54CG1|Q54CG1_DICDI 22 IKQINKSLLYTKTYNYYQIPLLSIIKTKNQ--HLLIEKIKLHNNTINNNNNNNNNNNNNNNNNNNNNNNNNNNK 93 88999999999999*****99999876554..445566666666666665554444444444444444444433 PP >> tr|Q86HA3|Q86HA3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0167286 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 7.3 0.011 4 180 234 .. 92 147 .. 66 157 .. 0.54 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.011 GCD14 180 rkskleeidlaekrleenerkr.iekakrrkaskdakvedkssksstevllkPvse 234 + + ++ + +k+ ++n++++ ++ ++++++++++ ++++++ +++vl+k ++e tr|Q86HA3|Q86HA3_DICDI 92 KDLNNNNNNNNNKNNNNNNNNNnNNNNNNNNNNNNNNNNNNNNNNNNNVLSKVCRE 147 33333333333333222222220222333333444444444455577888887766 PP >> tr|Q54TG7|Q54TG7_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0204654 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 6.9 0.012 4.6 140 223 .. 190 271 .. 179 289 .. 0.42 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.012 GCD14 140 grlCsfsPCieqvqrtceaLrelg..fteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks 223 +l +f C+e + + +++++lg f + le ks+ ++++++ + ++n++++ ++ ++++++++++ ++++++ tr|Q54TG7|Q54TG7_DICDI 190 LKLNCFN-CLEHLDLSNNNFTKLGleFLFFTLLETNKE---NEKSNQRNSNIFLNSSNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 271 5666664.888888888888876511444444554433...223333333332222222222222222222111111111111111 PP >> tr|Q550I3|Q550I3_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0217904 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 6.0 0.013 5 179 233 .. 161 215 .. 155 264 .. 0.78 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.013 GCD14 179 vrkskleeidlaekrleenerkriekakrrkaskdakvedkssksstevllkPvs 233 + +s++++ + ++++ ++n++++ ++ ++++++++++ ++++++ ++++ + P++ tr|Q550I3|Q550I3_DICDI 161 INNSTIPNNSNFNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIQSSPFR 215 5566777777777777777777677777777777777777777767888888875 PP >> sp|Q8MN60|Y9248_DICDI Putative uncharacterized protein DDB_G0277445 OS=Dictyostelium discoideum OX=44689 GN=DDB_G027 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 8.2 0.01 3.9 180 220 .. 17 57 .. 3 65 .. 0.36 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.01 GCD14 180 rkskleeidlaekrleenerkriekakrrkaskdakvedks 220 ++++++ + +++ ++n++++ ++ ++++++++++ ++++ sp|Q8MN60|Y9248_DICDI 17 TNNSINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 57 23333333333333222222222222222222222222222 PP >> tr|Q54U57|Q54U57_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0204118 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 9.4 0.016 5.8 164 221 .. 57 117 .. 46 134 .. 0.58 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.016 GCD14 164 fteietlevllrtyevrkskleeidlaekrleenerkrie.kakrrka..skdakvedkss 221 ++i+ +e+ +++ + +kl +id + +++ ++++++ + ++k++++ +++++ve+ ++ tr|Q54U57|Q54U57_DICDI 57 MQQITNVELTKFVNKEKSEKLATIDQTVQTKSKKQQNKEKqQQKQQQQqqQNKKRVENDNG 117 6789999999999999999999999965554443333332022222221122333333333 PP >> tr|Q54D70|Q54D70_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0184405 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 4.9 1.5 5.5e+02 183 228 .. 12 57 .. 2 80 .. 0.46 2 ? 12.3 3.2 0.00019 0.073 161 235 .. 227 303 .. 181 316 .. 0.65 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 1.5 GCD14 183 kleeidlaek.rleenerkriekakrrkaskdakvedkssksstevl 228 +++e ++ e+ ++++++k+ +k ++++ ++++k+e+k++k ++v+ tr|Q54D70|Q54D70_DICDI 12 NIKEKEEKEEgLIKDKSKKELKKLQKQQYKQQKKQEKKNNK-VNKVI 57 33333332220223333333333333333333333333333.33333 PP == domain 2 score: 12.3 bits; conditional E-value: 0.00019 GCD14 161 elgfteietlevllrtyevrkskleeidl.aekrleenerkriek.akrrkaskdakvedkssksstevllkPvsel 235 + +++++ + + ++++++ k++ ++ + e++ +en++++ ++ ++++++++++ ++++++ +++++ k s+ tr|Q54D70|Q54D70_DICDI 227 NYDYQDVMVPWLFQNQFDMTKKQQQQQQQqDENQRDENNNNNSNNnNNNNNNNNNNNNNNNNENEEDKIIEKSGSQY 303 56788888888888899875555444444244444444444444404444444444445555555788887765544 PP >> tr|Q54NM1|Q54NM1_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0186370 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 5.4 0.00066 0.25 145 228 .. 34 120 .. 18 163 .. 0.51 2 ? -0.2 0.7 1.2 4.5e+02 193 225 .. 262 294 .. 241 314 .. 0.50 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00066 GCD14 145 fsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks....stev 227 +s i+ t + + ++i+++ + ++ +++++ + +++ ++n++++ ++ ++++++++++ ++++++ +++ tr|Q54NM1|Q54NM1_DICDI 34 MSTTIDSSEVTLASSQTKSTNQINSIAL-STSIDTNNNEINCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNssssNSNS 119 5777777777777777777888888865.4456777777777666555555554444444444433333333333333212222222 PP GCD14 228 l 228 l tr|Q54NM1|Q54NM1_DICDI 120 L 120 2 PP == domain 2 score: -0.2 bits; conditional E-value: 1.2 GCD14 193 rleenerkriekakrrkaskdakvedkssksst 225 + e+n++++i++ +++ ++ +++ ss+++t tr|Q54NM1|Q54NM1_DICDI 262 ASENNNNNNINNNNNIIIPTNNDINKSSSSTTT 294 334444444444444444433333333333211 PP >> tr|Q54N67|Q54N67_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0186518 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 7.5 0.02 7.6 183 230 .. 83 129 .. 35 152 .. 0.51 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.02 GCD14 183 kleeidlaekrleenerkriekakrrkaskdakvedkssksstevllk 230 + ++ +++ ++n +++ ++ ++++++++++ ++++++ +++++ + tr|Q54N67|Q54N67_DICDI 83 PIITTTTNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNKNNNIMEN 129 222222222222222.12122222222222222222222223333333 PP >> tr|Q7KWM0|Q7KWM0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0217889 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 7.2 0.033 12 176 223 .. 43 88 .. 32 132 .. 0.55 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.033 GCD14 176 tyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks 223 +y+ + ++++ i+ +++ ++n++++ ++ ++ ++++++ +++++++ tr|Q7KWM0|Q7KWM0_DICDI 43 NYNLKLNNINIINNDNDNNNNNNNNNNNNNNN--NNNNNNNNNNNNNF 88 45555555555555444444443332222222..22222222333332 PP >> sp|Q54QL5|Y5670_DICDI Putative uncharacterized protein DDB_G0283779 OS=Dictyostelium discoideum OX=44689 GN=DDB_G028 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 9.2 0.02 7.5 170 222 .. 5 57 .. 1 62 [] 0.36 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.02 GCD14 170 levllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssk 222 +e+ ++ + + + + + +++ ++n++++ ++ ++++++++++ ++++++ sp|Q54QL5|Y5670_DICDI 5 IEIWIQLFFFNNYNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 57 56666665554443333333333333332332222222222222222222222 PP >> sp|Q54HW2|H2AV1_DICDI Histone H2A.v1 OS=Dictyostelium discoideum OX=44689 GN=H2Av1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 8.4 0.044 16 178 240 .. 69 137 .. 35 144 .. 0.40 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.044 GCD14 178 evrkskleeidlaekrleenerkriekakrrkaskdakvedkssks......stevllkPvselkghtg 240 + ++++ ++i+ +++ ++n++++i++ +++++ k++++++k+++ +++ ++ ++e ++ + sp|Q54HW2|H2AV1_DICDI 69 NNKTNNKNNINNNNNNNNNNNNNNINNNNKNNKVKKTTTTTKKNNEksnekqKSVKFANKINESRSARA 137 223333333333333333333333333333333222222222222211222233333334455555555 PP >> tr|Q55GE0|Q55GE0_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0189482 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 13.6 0.0029 1.1 142 230 .. 75 165 .. 58 178 .. 0.53 2 ? -1.3 0.6 2.6 9.8e+02 183 202 .. 191 194 .. 162 233 .. 0.43 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0029 GCD14 142 lCsfs.PCieqvqrtceaLrelgfteie..tlevllrtyevrk.skleeidlaekrleenerkriekakrrkaskdakvedksskss 224 C+f+ Cie q++ + ++++ t+ ++ ty+ +k +k+++ + +++ ++n++++ ++ +++++ ++++ ++++++ + tr|Q55GE0|Q55GE0_DICDI 75 PCCFTlLCIECQQHSSYSNQY-RAIQVKncTISNDIVTYNDKKdKKISNRNNNNNKNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNN 159 3999846****9999765433.333333125555666776555155665555554444444443333333333.3333333333334 PP GCD14 225 tevllk 230 +++ k tr|Q55GE0|Q55GE0_DICDI 160 NKINKK 165 444444 PP == domain 2 score: -1.3 bits; conditional E-value: 2.6 GCD14 183 kleeidlaekrleenerkri 202 + i tr|Q55GE0|Q55GE0_DICDI 191 N-----TH-----------I 194 1.....11...........1 PP >> sp|Q54FQ3|PKS29_DICDI Probable polyketide synthase 29 OS=Dictyostelium discoideum OX=44689 GN=pks29 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 2.8 1e+03 43 60 .. 1463 1480 .. 1459 1484 .. 0.86 2 ? 3.3 6.5 0.11 40 155 224 .. 2587 2660 .. 2578 2708 .. 0.63 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 2.8 GCD14 43 vvvesGtGsgslshaiar 60 +++e+G G+gsls i+ sp|Q54FQ3|PKS29_DICDI 1463 RILEAGGGTGSLSLLILE 1480 789**********98865 PP == domain 2 score: 3.3 bits; conditional E-value: 0.11 GCD14 155 tceaLrelgfteie.tlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks...s 224 + ++++l+ ++i+ ++e+ l ++ +++ ++ + +++ ++n++++ ++ ++++++ ++++++++++ + sp|Q54FQ3|PKS29_DICDI 2587 NIITIQQLQNNKINqSIEIILSAHNNNNKNNNNNNNINNNNKNNNNNNNKNNNNINNNINNNKNNNNNNNlvkK 2660 55555555666664279998888888777777777766666666666555555555544444444433322330 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (247 nodes) Target sequences: 12739 (6856946 residues searched) Passed MSV filter: 4369 (0.342963); expected 254.8 (0.02) Passed bias filter: 3212 (0.252139); expected 254.8 (0.02) Passed Vit filter: 1563 (0.122694); expected 12.7 (0.001) Passed Fwd filter: 1097 (0.0861135); expected 0.1 (1e-05) Initial search space (Z): 12739 [actual number of targets] Domain search space (domZ): 34 [number of targets reported over threshold] # CPU time: 8.50u 0.04s 00:00:08.53 Elapsed: 00:00:02.56 # Mc/sec: 661.59 // [ok]