# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-107 357.1 0.0 5.1e-107 356.8 0.0 1.1 1 tr|Q9VBH7|Q9VBH7_DROME tRNA (adenine(58)-N(1))-methyltransfe
9.4e-05 21.8 0.0 0.00014 21.3 0.0 1.2 1 sp|Q9W1V3|FBRL_DROME rRNA 2'-O-methyltransferase fibrillar
Domain annotation for each sequence (and alignments):
>> tr|Q9VBH7|Q9VBH7_DROME tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Drosophila melanogaste
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 356.8 0.0 7.4e-111 5.1e-107 1 246 [. 72 309 .. 72 310 .. 0.99
Alignments for each domain:
== domain 1 score: 356.8 bits; conditional E-value: 7.4e-111
GCD14 1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefre 87
g+++vl+ptPeLWt++Lphrtqi+yt+Dis+ii++Le++pG+vvvesGtGsgslsh+++r+++PtGhl+tf+fhe+ra++ar+efr+
tr|Q9VBH7|Q9VBH7_DROME 72 GWAHVLQPTPELWTQTLPHRTQIIYTPDISMIIHQLEVRPGAVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARADQARDEFRR 158
8************************************************************************************** PP
GCD14 88 helsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevll 174
h+++++vtv+hrDvc+ Gf +e++gk+DavfLDlPaP+ a+pha+kalk +ggr+CsfsPCieq qr++++L++lgf+ei +levl+
tr|Q9VBH7|Q9VBH7_DROME 159 HGIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVPHAFKALKLSGGRFCSFSPCIEQSQRCIQELTKLGFNEIVSLEVLQ 245
*************************************************************************************** PP
GCD14 175 rtyevrkskleeidl.aekrleenerkriekakrrkaskdakvedkssksstevllkPvselkghtgyLtfat 246
+++ v++++l++idl + k +++e++++++a ++ka k+ k++ +ss+ P ++l ghtg+Ltfat
tr|Q9VBH7|Q9VBH7_DROME 246 QENVVKTRTLPVIDLeFLKLPKTDETTAATNALESKAPKEVKKYLTSSN--------P-QTLPGHTGFLTFAT 309
***************999*******************************........7.99***********8 PP
>> sp|Q9W1V3|FBRL_DROME rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.3 0.0 2e-08 0.00014 35 150 .. 179 295 .. 173 313 .. 0.68
Alignments for each domain:
== domain 1 score: 21.3 bits; conditional E-value: 2e-08
GCD14 35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlP 122
++++ pGs+v+ G+ sg+ + ++ v+P G ++++ef ++ + + + +++ +++ + D+ + + + + g vD++f D+
sp|Q9W1V3|FBRL_DROME 179 QIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRD-LINVAKKRT-NIIPI-IEDARhPHKY-RMLVGMVDTIFADVA 263
67889**********************************7544433.333333332.33333.4455524555.5677*********** PP
GCD14 123 aPwea..ip.haakalkkeggrlCsf.sPCie 150
+P++ + +a + lk+ g + s + Ci+
sp|Q9W1V3|FBRL_DROME 264 QPDQGriVAlNAQHFLKNGGHFVISIkASCID 295
**985223313333344444444443245665 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 13786 (7394964 residues searched)
Passed MSV filter: 1089 (0.0789932); expected 275.7 (0.02)
Passed bias filter: 610 (0.0442478); expected 275.7 (0.02)
Passed Vit filter: 50 (0.00362687); expected 13.8 (0.001)
Passed Fwd filter: 8 (0.000580299); expected 0.1 (1e-05)
Initial search space (Z): 13786 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.08
# Mc/sec: 22831.95
//
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