# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6e-51 172.5 0.0 9.4e-51 171.9 0.0 1.3 1 tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monos
0.0033 16.2 0.0 0.0048 15.7 0.0 1.2 1 tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevico
------ inclusion threshold ------
4.6 5.9 14.5 5.7 5.6 14.5 1.1 1 tr|A9V657|A9V657_MONBE Predicted protein OS=Monosiga brevico
6.5 5.4 11.3 11 4.7 11.3 1.4 1 tr|A9V118|A9V118_MONBE Predicted protein OS=Monosiga brevico
Domain annotation for each sequence (and alignments):
>> tr|A9VAA8|A9VAA8_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=34220 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 171.9 0.0 4.1e-54 9.4e-51 1 135 [. 1001 1133 .. 1001 1135 .] 0.95
Alignments for each domain:
== domain 1 score: 171.9 bits; conditional E-value: 4.1e-54
GCD14 1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareef 85
gf+yvl+ptPeLW+l+L+hrtqi+y+aDi++i +L+l Gs+v+e+GtGsgsl+ha+ar+v+P+G++f+f+fh+qr+e ar+ef
tr|A9VAA8|A9VAA8_MONBE 1001 GFMYVLRPTPELWSLVLSHRTQIIYAADIAMICYQLDLCAGSRVLETGTGSGSLTHALARAVGPQGRVFSFDFHQQRVEIARDEF 1085
8************************************************************************************ PP
GCD14 86 rehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlPaPweaiphaakal 135
+h+l+ +v+v h D+ + + +++++vDavf+DlP+P a+++a++a+
tr|A9VAA8|A9VAA8_MONBE 1086 ARHGLT-NVQVAHADATmPDAW--GLHEEVDAVFFDLPKPHLALDNAVAAF 1133
****96.699*****9944555..999999****************99876 PP
>> tr|A9VE22|A9VE22_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=13022 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.0 2.1e-06 0.0048 36 151 .. 143 259 .. 135 286 .. 0.74
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 2.1e-06
GCD14 36 LelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDl 121
+++ pGs+v+ G+ sg+ + +a v+ G ++++ef ++ + + ++ +++ +v D+ + + + + vD++f D+
tr|A9VE22|A9VE22_MONBE 143 IHMGPGSKVLYLGAASGTTVSHVADLVGKDGLVYAVEFSHRSGR-DLINMAKKR--TNVIPIIEDARhPHKY-RMLVPMVDCIFADV 225
67789**************999****************764443.333443333..3333344555524555.55679********* PP
GCD14 122 PaPwea...iphaakalkkeggrlCsf.sPCieq 151
+P++ +a + lk++g + s + Ci+
tr|A9VE22|A9VE22_MONBE 226 AQPDQTrivALNAHNFLKNQGHFVISIkASCIDS 259
***9863212467788899988877763568865 PP
>> tr|A9V657|A9V657_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=10419 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.6 14.5 0.0025 5.7 173 244 .. 18 90 .. 8 93 .. 0.61
Alignments for each domain:
== domain 1 score: 5.6 bits; conditional E-value: 0.0025
GCD14 173 llrtyevrkskleeidlaekrleenerkrieka.krrkaskdakvedkssksstevllkPvselkghtgyLtf 244
+ r+++ +k+k ++ + +k+++++++k+ +k+ k++k++k++k+++++++ ++e + P s ++h ++f
tr|A9V657|A9V657_MONBE 18 DPRQNKKKKKKKKKKKKKKKKKKKKKKKKKKKKkKKKKKKKKKKKKKEEEEEEEEFKIIPSSRRRSHCVEVIF 90
5677777777666666655444444444443330333444444444445555788889999999999877766 PP
>> tr|A9V118|A9V118_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=25987 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.7 11.3 0.0047 11 179 233 .. 138 193 .. 111 203 .. 0.47
Alignments for each domain:
== domain 1 score: 4.7 bits; conditional E-value: 0.0047
GCD14 179 vrksklee.idlaekrleenerkriekakrrkaskdakvedkssksstevllkPvs 233
++++ ++ + +++ +++++++ ++++++k+++++k ++k+++++t++ ++P++
tr|A9V118|A9V118_MONBE 138 NKNKNKNKnKNKNKNKNKNKNKNKNKNKNKNKTKNKNKNKNKRTRTRTRTRTRPTT 193
22222211012222222222222233333333344444444444446666666654 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 526 (0.0572486); expected 183.8 (0.02)
Passed bias filter: 360 (0.0391815); expected 183.8 (0.02)
Passed Vit filter: 47 (0.00511537); expected 9.2 (0.001)
Passed Fwd filter: 10 (0.00108838); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.06
# Mc/sec: 22690.91
//
[ok]