# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/GCD14.hmm.txt # target sequence database: proteomes/Natronomonas_moolapensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: GCD14 [M=247] Accession: PF08704.9 Description: tRNA methyltransferase complex GCD14 subunit Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-15 53.9 0.0 4.2e-12 43.6 0.0 2.2 2 tr|M1XTL7|M1XTL7_NATM8 tRNA (Adenine-N(1))-methyltransferase Domain annotation for each sequence (and alignments): >> tr|M1XTL7|M1XTL7_NATM8 tRNA (Adenine-N(1))-methyltransferase TrmI OS=Natronomonas moolapensis (strain DSM 18674 / JC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.6 0.0 1.5e-15 4.2e-12 26 178 .. 68 214 .. 55 220 .. 0.92 2 ! 8.4 0.0 8.5e-05 0.23 229 246 .. 220 237 .. 214 238 .. 0.88 Alignments for each domain: == domain 1 score: 43.6 bits; conditional E-value: 1.5e-15 GCD14 26 taDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvckeGfdeevsg 112 Di l+i + + G +++++GtG+g l+ ++ r + t+e ++ a are++ ++++ + v++ D+ e + v+g tr|M1XTL7|M1XTL7_NATM8 68 PRDIGLVIGHTGVAAGDRALDAGTGTGVLAAYLGRLG---VEVTTYERDAEFAAVARENMATAGVAEQIDVRTGDLTDEL--DAVEG 149 579*****************************99952...36889*******************************9874..589** PP GCD14 113 kvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevllrtye 178 D + LD +++a + l gg l +sP +e + ++ea r+ g +ietle +r+ + tr|M1XTL7|M1XTL7_NATM8 150 GYDLLTLDTGDAAAVVERADELL-APGGFLAVYSPFVESARACVEAARSAGLADIETLETIQRRMD 214 **********9999999998888.9**********************************9999765 PP == domain 2 score: 8.4 bits; conditional E-value: 8.5e-05 GCD14 229 lkPvselkghtgyLtfat 246 ++P + +ghtgyL+fa+ tr|M1XTL7|M1XTL7_NATM8 220 SRPSTAGVGHTGYLVFAR 237 7999999**********7 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (247 nodes) Target sequences: 2723 (809592 residues searched) Passed MSV filter: 74 (0.0271759); expected 54.5 (0.02) Passed bias filter: 65 (0.0238707); expected 54.5 (0.02) Passed Vit filter: 8 (0.00293794); expected 2.7 (0.001) Passed Fwd filter: 1 (0.000367242); expected 0.0 (1e-05) Initial search space (Z): 2723 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 19996.92 // [ok]