# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Ornithorhynchus_anatinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.8e-75 252.4 0.0 7.2e-75 252.1 0.0 1.1 1 tr|F6RDG7|F6RDG7_ORNAN Uncharacterized protein OS=Ornithorhy
2.3e-18 67.0 0.0 3.4e-18 66.5 0.0 1.2 1 tr|F7BD68|F7BD68_ORNAN Uncharacterized protein OS=Ornithorhy
5.1e-05 23.3 0.0 7.1e-05 22.9 0.0 1.2 1 tr|F7DSB1|F7DSB1_ORNAN Uncharacterized protein OS=Ornithorhy
0.00027 21.0 0.0 0.00036 20.6 0.0 1.2 1 tr|F6YGL3|F6YGL3_ORNAN Protein-L-isoaspartate O-methyltransf
0.0094 15.9 0.0 0.019 14.9 0.0 1.4 1 tr|F7CKF0|F7CKF0_ORNAN Protein-L-isoaspartate (D-aspartate)
------ inclusion threshold ------
0.02 14.9 0.0 0.038 13.9 0.0 1.4 1 tr|F7FMN0|F7FMN0_ORNAN Uncharacterized protein OS=Ornithorhy
Domain annotation for each sequence (and alignments):
>> tr|F6RDG7|F6RDG7_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 252.1 0.0 2e-78 7.2e-75 48 247 .] 1 190 [. 1 190 [. 0.97
Alignments for each domain:
== domain 1 score: 252.1 bits; conditional E-value: 2e-78
GCD14 48 GtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaaka 134
GtGsgslsha++rt+aPtGhl+t+efh+qraeka+eefr h++++lvtv+++Dvck+Gf +v++ +DavfLD+P+Pwea++ha +a
tr|F6RDG7|F6RDG7_ORNAN 1 GTGSGSLSHALLRTIAPTGHLYTVEFHQQRAEKAMEEFRAHKVDHLVTVRNQDVCKNGF--GVTHAADAVFLDIPSPWEAVGHANAA 85
9**********************************************************..9************************* PP
GCD14 135 lkkeggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkss 221
l+ eggrlCsfsPCieqvqrtc+aL+e+gfte++tle+ll+ y+vr+++l+ dl++ ++ + + a + +++ks+
tr|F6RDG7|F6RDG7_ORNAN 86 LRVEGGRLCSFSPCIEQVQRTCRALEEHGFTEVHTLEILLQAYNVRTVNLPLPDLGKGATADAADAPSDVAADSGPPPPGMAQFKSG 172
*********************************************************999999888778888888899999999999 PP
GCD14 222 ksstevllkPvselkghtgyLtfatk 247
P++e++ghtgyLtfatk
tr|F6RDG7|F6RDG7_ORNAN 173 V--------PLKEMVGHTGYLTFATK 190
9........***************86 PP
>> tr|F7BD68|F7BD68_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 GN=TRMT61B PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.5 0.0 9.3e-22 3.4e-18 17 243 .. 169 416 .. 153 420 .. 0.70
Alignments for each domain:
== domain 1 score: 66.5 bits; conditional E-value: 9.3e-22
GCD14 17 LphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehel..........sql 93
++ i y +D+ +++m++++++G v+e G Gsg +s ++++v+ +G++ +fe ++ e a++++++ ++
tr|F7BD68|F7BD68_ORNAN 169 MKRGPNISYPKDVNMMVMMMDVHQGDAVLEVGSGSGGMSLFLSKAVGSQGRVMSFEIRKDHHEIAKKNYKNWCNawkishseewPEN 255
44556799************************************************************9974222333666554679 PP
GCD14 94 vtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLre...lgfteietlevllrty 177
v h+D+ + d + s++ Dav LD+ +P a+p + + l k+gg+ + i q+ + + +++ ++e + ev lr +
tr|F7BD68|F7BD68_ORNAN 256 VDFIHKDIATAAQDLK-SKTFDAVALDMLNPQIALPIVYQSL-KQGGVCTIYLASITQIIELLNGISScrlALYCE-KITEVTLRDW 339
********99877444.3679*********************.778877778899999877665555411155676.6779999999 PP
GCD14 178 evrkskleeidl...aekrleenerkriekakrrka.skdakvedkssks.......stevllkPvselkghtgyLt 243
v k + + +++ +++ ++++ ++ + ++++ + + ++++ +++P++ ght++L+
tr|F7BD68|F7BD68_ORNAN 340 LVCPAKKKDGTFvqrVQPTTNLDSELHTHEDDEGEEgEEEQVQAEDNGETlsdspygAVPYIARPLHWQCGHTAFLI 416
875444443333100222222222222222222222122222222222224555665777899************96 PP
>> tr|F7DSB1|F7DSB1_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.9 0.0 2e-08 7.1e-05 34 141 .. 100 207 .. 91 239 .. 0.71
Alignments for each domain:
== domain 1 score: 22.9 bits; conditional E-value: 2e-08
GCD14 34 mkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfL 119
++++kpG++v+ G+ sg+ + ++ v+P G ++++ef ++ + + + +++ ++++ v D+ + + + + g vD +f
tr|F7DSB1|F7DSB1_ORNAN 100 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD-LINVAKKR-TNVIPVI-EDARhPHKY-RMLIGMVDVIFA 182
5789************************************7644444.43443333.2344444.455425666.5566******** PP
GCD14 120 DlPaPwea..i.phaakalkkeggr 141
D+ +P+++ + +a + l++ g
tr|F7DSB1|F7DSB1_ORNAN 183 DVAQPDQSriVaLNAHNFLRNGGHF 207
*****98632212445555444444 PP
>> tr|F6YGL3|F6YGL3_ORNAN Protein-L-isoaspartate O-methyltransferase OS=Ornithorhynchus anatinus OX=9258 GN=PCMT1 PE=3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.0 9.9e-08 0.00036 37 94 .. 126 183 .. 115 231 .. 0.81
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 9.9e-08
GCD14 37 elkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlv 94
+l++G+++++ G Gsg l+ ++r v+P G++ +++ ++ ++ ++++ ++++ s l+
tr|F6YGL3|F6YGL3_ORNAN 126 QLHEGAKALDVGSGSGILTACFSRMVGPIGKVVGIDHIKELVDDSINNVKKDDPSFLT 183
5789***************************************999999988765544 PP
>> tr|F7CKF0|F7CKF0_ORNAN Protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 OS=Ornithorhynch
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.9 0.0 5.2e-06 0.019 30 86 .. 70 126 .. 60 140 .. 0.92
Alignments for each domain:
== domain 1 score: 14.9 bits; conditional E-value: 5.2e-06
GCD14 30 sliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefr 86
s ++ L+l+pG ++ G G+g ls+ + ++P G + +e h + +e a+e+++
tr|F7CKF0|F7CKF0_ORNAN 70 SEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLE 126
568899******************************************999998765 PP
>> tr|F7FMN0|F7FMN0_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 GN=PCMTD2 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.9 0.0 1e-05 0.038 30 84 .. 70 124 .. 57 132 .. 0.92
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 1e-05
GCD14 30 sliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekaree 84
s ++ L+l+pG ++ G G+g ls+ + ++P G + +e h + +e a+++
tr|F7FMN0|F7FMN0_ORNAN 70 SEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEYAKQK 124
568899*****************************************99999875 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 21677 (8259262 residues searched)
Passed MSV filter: 967 (0.0446095); expected 433.5 (0.02)
Passed bias filter: 670 (0.0309083); expected 433.5 (0.02)
Passed Vit filter: 67 (0.00309083); expected 21.7 (0.001)
Passed Fwd filter: 10 (0.000461318); expected 0.2 (1e-05)
Initial search space (Z): 21677 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.09
# Mc/sec: 22667.09
//
[ok]