# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/GCD14.hmm.txt # target sequence database: proteomes/Ornithorhynchus_anatinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: GCD14 [M=247] Accession: PF08704.9 Description: tRNA methyltransferase complex GCD14 subunit Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-75 252.4 0.0 7.2e-75 252.1 0.0 1.1 1 tr|F6RDG7|F6RDG7_ORNAN Uncharacterized protein OS=Ornithorhy 2.3e-18 67.0 0.0 3.4e-18 66.5 0.0 1.2 1 tr|F7BD68|F7BD68_ORNAN Uncharacterized protein OS=Ornithorhy 5.1e-05 23.3 0.0 7.1e-05 22.9 0.0 1.2 1 tr|F7DSB1|F7DSB1_ORNAN Uncharacterized protein OS=Ornithorhy 0.00027 21.0 0.0 0.00036 20.6 0.0 1.2 1 tr|F6YGL3|F6YGL3_ORNAN Protein-L-isoaspartate O-methyltransf 0.0094 15.9 0.0 0.019 14.9 0.0 1.4 1 tr|F7CKF0|F7CKF0_ORNAN Protein-L-isoaspartate (D-aspartate) ------ inclusion threshold ------ 0.02 14.9 0.0 0.038 13.9 0.0 1.4 1 tr|F7FMN0|F7FMN0_ORNAN Uncharacterized protein OS=Ornithorhy Domain annotation for each sequence (and alignments): >> tr|F6RDG7|F6RDG7_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 252.1 0.0 2e-78 7.2e-75 48 247 .] 1 190 [. 1 190 [. 0.97 Alignments for each domain: == domain 1 score: 252.1 bits; conditional E-value: 2e-78 GCD14 48 GtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaaka 134 GtGsgslsha++rt+aPtGhl+t+efh+qraeka+eefr h++++lvtv+++Dvck+Gf +v++ +DavfLD+P+Pwea++ha +a tr|F6RDG7|F6RDG7_ORNAN 1 GTGSGSLSHALLRTIAPTGHLYTVEFHQQRAEKAMEEFRAHKVDHLVTVRNQDVCKNGF--GVTHAADAVFLDIPSPWEAVGHANAA 85 9**********************************************************..9************************* PP GCD14 135 lkkeggrlCsfsPCieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkss 221 l+ eggrlCsfsPCieqvqrtc+aL+e+gfte++tle+ll+ y+vr+++l+ dl++ ++ + + a + +++ks+ tr|F6RDG7|F6RDG7_ORNAN 86 LRVEGGRLCSFSPCIEQVQRTCRALEEHGFTEVHTLEILLQAYNVRTVNLPLPDLGKGATADAADAPSDVAADSGPPPPGMAQFKSG 172 *********************************************************999999888778888888899999999999 PP GCD14 222 ksstevllkPvselkghtgyLtfatk 247 P++e++ghtgyLtfatk tr|F6RDG7|F6RDG7_ORNAN 173 V--------PLKEMVGHTGYLTFATK 190 9........***************86 PP >> tr|F7BD68|F7BD68_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 GN=TRMT61B PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.5 0.0 9.3e-22 3.4e-18 17 243 .. 169 416 .. 153 420 .. 0.70 Alignments for each domain: == domain 1 score: 66.5 bits; conditional E-value: 9.3e-22 GCD14 17 LphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehel..........sql 93 ++ i y +D+ +++m++++++G v+e G Gsg +s ++++v+ +G++ +fe ++ e a++++++ ++ tr|F7BD68|F7BD68_ORNAN 169 MKRGPNISYPKDVNMMVMMMDVHQGDAVLEVGSGSGGMSLFLSKAVGSQGRVMSFEIRKDHHEIAKKNYKNWCNawkishseewPEN 255 44556799************************************************************9974222333666554679 PP GCD14 94 vtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLre...lgfteietlevllrty 177 v h+D+ + d + s++ Dav LD+ +P a+p + + l k+gg+ + i q+ + + +++ ++e + ev lr + tr|F7BD68|F7BD68_ORNAN 256 VDFIHKDIATAAQDLK-SKTFDAVALDMLNPQIALPIVYQSL-KQGGVCTIYLASITQIIELLNGISScrlALYCE-KITEVTLRDW 339 ********99877444.3679*********************.778877778899999877665555411155676.6779999999 PP GCD14 178 evrkskleeidl...aekrleenerkriekakrrka.skdakvedkssks.......stevllkPvselkghtgyLt 243 v k + + +++ +++ ++++ ++ + ++++ + + ++++ +++P++ ght++L+ tr|F7BD68|F7BD68_ORNAN 340 LVCPAKKKDGTFvqrVQPTTNLDSELHTHEDDEGEEgEEEQVQAEDNGETlsdspygAVPYIARPLHWQCGHTAFLI 416 875444443333100222222222222222222222122222222222224555665777899************96 PP >> tr|F7DSB1|F7DSB1_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.9 0.0 2e-08 7.1e-05 34 141 .. 100 207 .. 91 239 .. 0.71 Alignments for each domain: == domain 1 score: 22.9 bits; conditional E-value: 2e-08 GCD14 34 mkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfL 119 ++++kpG++v+ G+ sg+ + ++ v+P G ++++ef ++ + + + +++ ++++ v D+ + + + + g vD +f tr|F7DSB1|F7DSB1_ORNAN 100 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD-LINVAKKR-TNVIPVI-EDARhPHKY-RMLIGMVDVIFA 182 5789************************************7644444.43443333.2344444.455425666.5566******** PP GCD14 120 DlPaPwea..i.phaakalkkeggr 141 D+ +P+++ + +a + l++ g tr|F7DSB1|F7DSB1_ORNAN 183 DVAQPDQSriVaLNAHNFLRNGGHF 207 *****98632212445555444444 PP >> tr|F6YGL3|F6YGL3_ORNAN Protein-L-isoaspartate O-methyltransferase OS=Ornithorhynchus anatinus OX=9258 GN=PCMT1 PE=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.0 9.9e-08 0.00036 37 94 .. 126 183 .. 115 231 .. 0.81 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 9.9e-08 GCD14 37 elkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlv 94 +l++G+++++ G Gsg l+ ++r v+P G++ +++ ++ ++ ++++ ++++ s l+ tr|F6YGL3|F6YGL3_ORNAN 126 QLHEGAKALDVGSGSGILTACFSRMVGPIGKVVGIDHIKELVDDSINNVKKDDPSFLT 183 5789***************************************999999988765544 PP >> tr|F7CKF0|F7CKF0_ORNAN Protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 OS=Ornithorhynch # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.0 5.2e-06 0.019 30 86 .. 70 126 .. 60 140 .. 0.92 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 5.2e-06 GCD14 30 sliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefr 86 s ++ L+l+pG ++ G G+g ls+ + ++P G + +e h + +e a+e+++ tr|F7CKF0|F7CKF0_ORNAN 70 SEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLE 126 568899******************************************999998765 PP >> tr|F7FMN0|F7FMN0_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 GN=PCMTD2 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1e-05 0.038 30 84 .. 70 124 .. 57 132 .. 0.92 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1e-05 GCD14 30 sliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekaree 84 s ++ L+l+pG ++ G G+g ls+ + ++P G + +e h + +e a+++ tr|F7FMN0|F7FMN0_ORNAN 70 SEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEYAKQK 124 568899*****************************************99999875 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (247 nodes) Target sequences: 21677 (8259262 residues searched) Passed MSV filter: 967 (0.0446095); expected 433.5 (0.02) Passed bias filter: 670 (0.0309083); expected 433.5 (0.02) Passed Vit filter: 67 (0.00309083); expected 21.7 (0.001) Passed Fwd filter: 10 (0.000461318); expected 0.2 (1e-05) Initial search space (Z): 21677 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.09 # Mc/sec: 22667.09 // [ok]