# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-06 27.9 0.0 7.2e-06 27.3 0.0 1.2 1 tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas
2.2e-05 25.8 0.0 4.2e-05 24.8 0.0 1.3 1 tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas
------ inclusion threshold ------
1.5 9.9 5.1 1.8 9.6 5.1 1.2 1 tr|A2DP68|A2DP68_TRIVA Uncharacterized protein OS=Trichomona
3.3 8.8 4.5 48 5.0 0.0 2.5 2 tr|A2EJG2|A2EJG2_TRIVA Uncharacterized protein OS=Trichomona
Domain annotation for each sequence (and alignments):
>> tr|A2E9S9|A2E9S9_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_282140 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.0 5.8e-10 7.2e-06 37 164 .. 157 292 .. 146 307 .. 0.76
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 5.8e-10
GCD14 37 elkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlP 122
+ pG++v+ G+ sg+ + ++ v+PtG+++++ef + r ar+ +l ++ D+ + + + + vD +f D+
tr|A2E9S9|A2E9S9_TRIVA 157 GICPGAKVLYLGAASGTTVSHVSDIVGPTGRVYAVEFSH-R--VARDLVSLAKLRPNIVPIINDARyPNKY-RMLVPMVDYMFADVA 239
6889**************9******************75.3..5777888889988777777888735555.66779********** PP
GCD14 123 aPwea...iphaakalkkegg.rlCsfsPCieqv.......qrtceaLrelgf 164
+P++a +a + lk+ gg +lC + C++ q++ e+L++ gf
tr|A2E9S9|A2E9S9_TRIVA 240 QPDQArifAINANNFLKSGGGfMLCVKASCVNSSedpetiyQQAQEELTKEGF 292
****9432245667788777657899999*97542222223566666666666 PP
>> tr|A2DXE8|A2DXE8_TRIVA Fibrillarin, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_380100 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.0 3.3e-09 4.2e-05 35 168 .. 143 284 .. 138 293 .. 0.70
Alignments for each domain:
== domain 1 score: 24.8 bits; conditional E-value: 3.3e-09
GCD14 35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLD 120
k+ +kpG+ v+ G+ sg+ + ++ v+PtG+++++ef +r+ + + ++ + + ++v + D+ + + + + vD +f D
tr|A2DXE8|A2DXE8_TRIVA 143 KFGIKPGASVLYLGAASGTTVSHVSDIVGPTGRVYAVEFS-HRVGRELCNLAKSRP-NIVPI-IEDARhPQKY-RMLVPMVDYMFAD 225
6779****************9******************6.577777777766553.33333.3455514445.556799******* PP
GCD14 121 lPaPwea...iphaakalkkegg.rlCsfsPCieqv.......qrtceaLrelgfteie 168
+ +P++a + + lk++gg +lC + C++ + ++L++ gf++ e
tr|A2DXE8|A2DXE8_TRIVA 226 VAQPDQArifVLNGQFFLKNNGGyMLCVKASCVDSTldphkvyAMAQQELKDAGFQNEE 284
******96444555556788776478999999986411111112234556666666555 PP
>> tr|A2DP68|A2DP68_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_015980 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.6 5.1 0.00014 1.8 153 232 .. 14 95 .. 6 143 .. 0.77
Alignments for each domain:
== domain 1 score: 9.6 bits; conditional E-value: 0.00014
GCD14 153 qrtceaLrelgfteietlevllrtyevrks..kleeidlaekrleenerkriekakrrkaskdakvedkssks.stevllkPv 232
r +e+L e + +ei tl +++ + r +++++ +++kr e+ e+++ ++a ++k+sk++k++ kss+ t v kP
tr|A2DP68|A2DP68_TRIVA 14 ERVVEKLIE-KNNEIATLKDEIKELKNRLLpyEMNTMTETQKRAEQIENDKYKQAIKQKTSKETKTSSKSSQNtATPVPEKPS 95
678889988.779*****99999999998711455556678888888888888888888888888777776642344444443 PP
>> tr|A2EJG2|A2EJG2_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_050340 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 3.8 0.035 4.4e+02 175 234 .. 36 97 .. 21 103 .. 0.63
2 ? 5.0 0.0 0.0038 48 51 91 .. 258 298 .. 237 302 .. 0.83
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.035
GCD14 175 rtyevrkskleeidlaekrleenerkriekakrrkaskdakvedkssks..stevllkPvse 234
++v ++ + ++ + k+ ++n+++r+ek+ ++++++++++++s k ++ kPv++
tr|A2EJG2|A2EJG2_TRIVA 36 SDFDVPEMYFYFTSNGSKANKKNKKTRAEKRLAKSQKEQEAKSEESPKEeiPAKEEEKPVED 97
56777777777777788888888888887776666544444444333322245555666655 PP
== domain 2 score: 5.0 bits; conditional E-value: 0.0038
GCD14 51 sgslshaiartvaPtGhlftfefheqraekareefrehels 91
g s ++ r + P G + fe ++ ++ +eef+ + ++
tr|A2EJG2|A2EJG2_TRIVA 258 IGDKSMSLKRVMYPDGEVEEFESKKNLTDADLEEFKANWIK 298
56668889****************************98776 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 4050 (0.0806934); expected 1003.8 (0.02)
Passed bias filter: 1839 (0.0366408); expected 1003.8 (0.02)
Passed Vit filter: 236 (0.00470213); expected 50.2 (0.001)
Passed Fwd filter: 47 (0.000936442); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 1.13u 0.03s 00:00:01.15 Elapsed: 00:00:00.32
# Mc/sec: 13164.48
//
[ok]