# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/GCD14.hmm.txt
# target sequence database: proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: GCD14 [M=247]
Accession: PF08704.9
Description: tRNA methyltransferase complex GCD14 subunit
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-90 301.8 0.0 3.4e-90 301.4 0.0 1.2 1 tr|B3S082|B3S082_TRIAD tRNA (adenine(58)-N(1))-methyltransfe
3.3e-15 55.8 0.0 4.7e-15 55.3 0.0 1.1 1 tr|B3S6G3|B3S6G3_TRIAD Uncharacterized protein OS=Trichoplax
6.9e-06 25.3 0.0 1e-05 24.7 0.0 1.2 1 tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax
0.0027 16.8 0.0 0.0042 16.2 0.0 1.4 1 tr|B3RJQ6|B3RJQ6_TRIAD Protein-L-isoaspartate O-methyltransf
0.0092 15.1 1.1 0.015 14.4 0.4 1.6 2 tr|B3RRK7|B3RRK7_TRIAD Uncharacterized protein OS=Trichoplax
Domain annotation for each sequence (and alignments):
>> tr|B3S082|B3S082_TRIAD tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Trichoplax adhaerens O
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 301.4 0.0 1.5e-93 3.4e-90 1 246 [. 64 296 .. 64 297 .. 0.91
Alignments for each domain:
== domain 1 score: 301.4 bits; conditional E-value: 1.5e-93
GCD14 1 gfvyvlaptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefre 87
g++y+l+pt eLWtl+L hrtq++y++Dis+ii +Le+ pG+ v+esGtGsgslshai+r+v+P G+l t+efh++ra+ka ++f+
tr|B3S082|B3S082_TRIAD 64 GWLYILHPTAELWTLSLLHRTQVIYSTDISMIISELEIMPGCLVIESGTGSGSLSHAIIRAVSPNGKLLTYEFHNERADKAENDFKL 150
8************************************************************************************** PP
GCD14 88 helsqlvtvthrDvckeGfdeevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelgfteietlevll 174
++l++lvtv+ r+vc+eGf ++++++Dav LDlP Pweaip a++al k ggr+C+fsPCieqvqr+c Lr++gf+++++le l
tr|B3S082|B3S082_TRIAD 151 NGLNHLVTVHCRNVCQEGF--DITSEADAVILDLPIPWEAIPYAKQAL-KPGGRICCFSPCIEQVQRSCMCLRDHGFIDVKVLETIL 234
*******************..9**************************.99************************************ PP
GCD14 175 rtyevrkskleeidlaekrleenerkriekakrrkaskdakvedksskss.tevllkPvselkghtgyLtfat 246
r y v+k++l+ ++ ++ + +++++ + d +++++++ks+ + + + Pv ++ ghtgyLtfat
tr|B3S082|B3S082_TRIAD 235 RPYRVKKMELPIANTGNCESFQSNER--------S---DPSTSHHENKSKrELLSTFPVATTPGHTGYLTFAT 296
************99977655444333........2...2222222222220344567***************8 PP
>> tr|B3S6G3|B3S6G3_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_59795 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 55.3 0.0 2.1e-18 4.7e-15 7 200 .. 77 279 .. 72 300 .. 0.83
Alignments for each domain:
== domain 1 score: 55.3 bits; conditional E-value: 2.1e-18
GCD14 7 aptPeLWtlaLphrtqilytaDisliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehel... 90
+pt e + l ++ + y +D + +++++++ Gs+v+esG Gsg l+ ++r+v+ G++ ++e e ar++ + +
tr|B3S6G3|B3S6G3_TRIAD 77 RPTLEDYILHMKRGPTVTYPKDAAAMVTMMDIGCGSKVLESGSGSGGLTLFLSRAVGNEGRIDSYEVRSGHLEIARKNVQAWKGswn 163
577777778888888899*************************************************99999999999886543333 PP
GCD14 91 .......sqlvtvthrDvckeGf.deevsgkvDavfLDlPaPweaiphaakalkkeggrlCsfsPCieqvqrtceaLrelg..ftei 167
+++ h+Dv k ++v Dav LDl + +p + k+l + g + ++ P i qv t ++++++ f
tr|B3S6G3|B3S6G3_TRIAD 164 vnhlqtwPDNIYFFHQDVIKALTmPTDV---FDAVALDLQDLSDVLPFVLKVL-RIGRPVVAYLPNITQVITTLQRIKQQSlpFSLD 246
44445555689999****9775547777...9*********************.7788899**************998754228888 PP
GCD14 168 etlevllrtyevrkskleeidlaekrleenerk 200
+++ev + +++ sk + + ++++ e+n +k
tr|B3S6G3|B3S6G3_TRIAD 247 RVVEVYHKLWHIAPSKTLNFSSGATHSESNAKK 279
99*********9998888888777666666544 PP
>> tr|B3S5V8|B3S5V8_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_64190 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.7 0.0 4.4e-09 1e-05 34 151 .. 146 264 .. 138 285 .. 0.72
Alignments for each domain:
== domain 1 score: 24.7 bits; conditional E-value: 4.4e-09
GCD14 34 mkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfL 119
k+++kpG++v+ G+ sg+ + ++ v+P G ++++ef ++ + + + +++ +++ + D+ + + + + g vD +f
tr|B3S5V8|B3S5V8_TRIAD 146 DKIHIKPGAKVLYLGAASGTTVSHVSDIVGPNGLVYAVEFSHRSGRD-LINVAKKRT-NIIPI-IEDARhPHKY-RMLVGMVDVIFA 228
5789************************************7544433.333333332.33333.4455524555.5677******** PP
GCD14 120 DlPaPwea..ip.haakalkkeggrlCsf.sPCieq 151
D+ +P++ + +a + lk+eg + s + Ci+
tr|B3S5V8|B3S5V8_TRIAD 229 DVAQPDQTriVAiNAHHFLKNEGHFVISIkANCIDS 264
*****9863222145555688887777662568875 PP
>> tr|B3RJQ6|B3RJQ6_TRIAD Protein-L-isoaspartate O-methyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_495
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.0 1.8e-06 0.0042 35 86 .. 73 124 .. 52 180 .. 0.80
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 1.8e-06
GCD14 35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefr 86
+lk+G+ +++ G Gsg l+ +a v+ G+++ +e+ + ++ +r++ +
tr|B3RJQ6|B3RJQ6_TRIAD 73 ASNLKEGCTILDVGSGSGYLTACMAMMVGSSGKVYGIEHIPELISLSRNNIN 124
55799*********************************98777766666655 PP
>> tr|B3RRK7|B3RRK7_TRIAD Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_54278 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.0 0.8 1.8e+03 144 197 .. 41 96 .. 29 117 .. 0.55
2 ! 14.4 0.4 6.5e-06 0.015 149 217 .. 184 252 .. 150 273 .. 0.75
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 0.8
GCD14 144 sfsPCieq.vqrtceaLrel.gfteietlevllrtyevrkskleeidlaekrleen 197
sfs +eq +++ e + t + + l+r +++ + l+ ++ e ++e +
tr|B3RRK7|B3RRK7_TRIAD 41 SFSLAVEQhIKKNREGYVSItLITSFKKVKCLTRDWNIVAEALKYSQKLEVNQEGK 96
67777776223333332222023445566666666666666666555544333333 PP
== domain 2 score: 14.4 bits; conditional E-value: 6.5e-06
GCD14 149 ieqvqrtceaLrelgfteietlevllrtyevrkskleeidlaekrleenerkriekakrrkaskdakve 217
e r++e L++ + ++++ + v l + ++++s+l++i+++e++ ++++ ++ ek k++k +k+++++
tr|B3RRK7|B3RRK7_TRIAD 184 PEHALRCIEGLTQADRQDLDGIGVTLLNLKIKQSTLDKIKEMEAKAKSDSASQDEKEKKSKRKKKKNKR 252
478889**********************************99888888877777666666655444433 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (247 nodes)
Target sequences: 11518 (5222075 residues searched)
Passed MSV filter: 750 (0.0651155); expected 230.4 (0.02)
Passed bias filter: 414 (0.0359437); expected 230.4 (0.02)
Passed Vit filter: 39 (0.003386); expected 11.5 (0.001)
Passed Fwd filter: 6 (0.000520924); expected 0.1 (1e-05)
Initial search space (Z): 11518 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.05
# Mc/sec: 25797.05
//
[ok]