# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                       -----------
      2e-39  136.8   7.5    2.3e-36  126.7   3.1    2.2  2  tr|A0A1X7UZN4|A0A1X7UZN4_AMPQE  Uncharacterized protein OS=Amphi


Domain annotation for each sequence (and alignments):
>> tr|A0A1X7UZN4|A0A1X7UZN4_AMPQE  Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   3.1   5.4e-41   2.3e-36       2     182 ..       6     173 ..       5     176 .. 0.92
   2 !   12.4   0.1   3.6e-06      0.16     206     225 ..     176     195 ..     174     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 5.4e-41
                          Gcd10p   2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaee 80 
                                     I++n++vll   ++ +k +++++  +i+++K   f  +++ig pyg+ fe+ + +       l +v+++e++ e+ + +
  tr|A0A1X7UZN4|A0A1X7UZN4_AMPQE   6 IEENKVVLLH-VKDIYKPIRLVKRRKIKFDKIS-FVPDAAIGLPYGSEFEVARGN-------LILVKEEERRGEEGTIS 75 
                                     99********.999******************9.*****************9999.......66887788777776666 PP

                          Gcd10p  81 eaeeeeeeeeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrf 159
                                     + +e    e+a+dnr i+ddg +QkL++eeI+++Kk+g+s g+ei + +++ +++f+++T+FSqeKY+k+K k++ + +
  tr|A0A1X7UZN4|A0A1X7UZN4_AMPQE  76 QLTE--VVESAKDNRLIVDDGLSQKLSHEEIHQMKKDGMS-GQEILESVVQGSSSFKDRTKFSQEKYVKKKYKRHSHVL 151
                                     5444..4457******************************.************************************** PP

                          Gcd10p 160 tvlpldvsllleyllekkdaqki 182
                                     ++ +++++l+++y+++ k ++ki
  tr|A0A1X7UZN4|A0A1X7UZN4_AMPQE 152 SIIKPTTRLIAQYYYA-KGPSKI 173
                                     ****************.899998 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.6e-06
                          Gcd10p 206 LvvDdtgGLlvaalaeRmgi 225
                                     +v+++++GLl++a++eR+g 
  tr|A0A1X7UZN4|A0A1X7UZN4_AMPQE 176 VVMETCQGLLTGAVLERLGD 195
                                     699***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        43435  (14716620 residues searched)
Passed MSV filter:                      2600  (0.0598596); expected 868.7 (0.02)
Passed bias filter:                      950  (0.0218718); expected 868.7 (0.02)
Passed Vit filter:                        87  (0.00200299); expected 43.4 (0.001)
Passed Fwd filter:                         2  (4.60458e-05); expected 0.4 (1e-05)
Initial search space (Z):              43435  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.01s 00:00:00.38 Elapsed: 00:00:00.12
# Mc/sec: 36791.55
//
[ok]