# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-62 212.0 7.9 3.1e-62 211.1 4.5 2.3 2 tr|C3XZG9|C3XZG9_BRAFL Uncharacterized protein (Fragment) OS
------ inclusion threshold ------
0.21 11.4 3.8 1.8 8.3 1.2 2.9 3 tr|C3YQF7|C3YQF7_BRAFL Uncharacterized protein (Fragment) OS
Domain annotation for each sequence (and alignments):
>> tr|C3XZG9|C3XZG9_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_202589 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 211.1 4.5 2.2e-66 3.1e-62 2 278 .. 2 253 .. 1 286 [. 0.84
2 ? -1.4 0.5 0.11 1.6e+03 70 113 .. 275 318 .. 241 326 .. 0.57
Alignments for each domain:
== domain 1 score: 211.1 bits; conditional E-value: 2.2e-66
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88
I++++ vl++ +++++v+v++n++i +K + f l++++g p+g+ fe+ +k+ + +s+++
tr|C3XZG9|C3XZG9_BRAFL 2 IEEGDQVLIQ-KANVFRLVKVERNKKIFTEKLQ-FFLDNAVGLPLGSKFEVRNKQLF---Q---------VPHDSVDT--------- 65
99********.888*******************.********************943...2.........33445544......... PP
Gcd10p 89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleylle 175
r+n++i dd+++QkLtke+ +e+ k+ga+ g+eiI++l +++++f++KT+FSq+KYl++K kKYl+++t+l+++ +ll++++++
tr|C3XZG9|C3XZG9_BRAFL 66 --DRNNEKIQDDNRSQKLTKEDLKEMAKQGAK-GEEIIEQLAQNNANFKDKTSFSQAKYLRKKGKKYLNYITILRPTLRLLCNMYMA 149
..489***************************.****************************************************** PP
Gcd10p 176 kkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaaepehp 262
k+++ki++lr +tl+++l+++n+ha+++++vvD+++GL+++a++eRmg+ gt++++++++ p + ++fn+ p ++
tr|C3XZG9|C3XZG9_BRAFL 150 -KSPSKICHLRVDTLSQMLTVGNIHAHSKVIVVDTCQGLVLGAVMERMGG------LGTLVQVYHGDFPFRHAYDAFNF----PASF 225
.9************************************************......***********************....4444 PP
Gcd10p 263 lkkh....lktlswlqlle........p 278
+++ +++l++++ + +
tr|C3XZG9|C3XZG9_BRAFL 226 DETMmpypMNQLNYIHCPQsikdglqrE 253
4433211144444442222333555441 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.11
Gcd10p 70 aeleaeslaeeeaeeeeeeee...........ardnreiiddga.rQkLtkeeIee 113
ae + ee++ r+ + ++++++ rQ+ ke+Ie+
tr|C3XZG9|C3XZG9_BRAFL 275 AE------------PNVEEQKvevapedsisaPRTEQLLTEEQEgRQRERKEKIEQ 318
22............222222245555555555777777777666677777777776 PP
>> tr|C3YQF7|C3YQF7_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_241798 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.8 0.1 0.072 1e+03 231 254 .. 21 44 .. 13 74 .. 0.73
2 ? 8.3 1.2 0.00012 1.8 232 277 .. 142 187 .. 60 192 .. 0.87
3 ? 7.0 0.1 0.0003 4.3 232 258 .. 166 192 .. 165 213 .. 0.81
Alignments for each domain:
== domain 1 score: -0.8 bits; conditional E-value: 0.072
Gcd10p 231 kegtitliheneqpnlsllkyfny 254
++++it i++ + +nl+ l+++ +
tr|C3YQF7|C3YQF7_BRAFL 21 AHNKITTINSRTFANLTQLQQLFL 44
579999999999999998887554 PP
== domain 2 score: 8.3 bits; conditional E-value: 0.00012
Gcd10p 232 egtitliheneqpnlsllkyfnydaaepehplkkhlktlswlqlle 277
+++it ih+++ +nls l+y+++ +++ +h+ + + l +l+++
tr|C3YQF7|C3YQF7_BRAFL 142 RNQITYIHHDTFANLSRLQYLDLGHNQITHIHSGVFANLPLLKFFY 187
6899999999999999999999987778888777777777777765 PP
== domain 3 score: 7.0 bits; conditional E-value: 0.0003
Gcd10p 232 egtitliheneqpnlsllkyfnydaae 258
+++it+ih++ +nl llk+f +++++
tr|C3YQF7|C3YQF7_BRAFL 166 HNQITHIHSGVFANLPLLKFFYLQSNK 192
69*******************996554 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 1571 (0.0550417); expected 570.8 (0.02)
Passed bias filter: 648 (0.0227034); expected 570.8 (0.02)
Passed Vit filter: 57 (0.00199706); expected 28.5 (0.001)
Passed Fwd filter: 2 (7.00722e-05); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.34u 0.01s 00:00:00.35 Elapsed: 00:00:00.13
# Mc/sec: 30572.51
//
[ok]