# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-61 205.7 0.0 1.6e-60 204.9 0.0 1.4 1 tr|Q94416|Q94416_CAEEL Uncharacterized protein OS=Caenorhabd
Domain annotation for each sequence (and alignments):
>> tr|Q94416|Q94416_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_ZK858.7 PE=1 SV=3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 204.9 0.0 7.9e-65 1.6e-60 2 276 .. 13 288 .. 12 324 .. 0.90
Alignments for each domain:
== domain 1 score: 204.9 bits; conditional E-value: 7.9e-65
Gcd10p 2 IkpnqhvllkLpse.nlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeee 87
Ik++++++++ ++ + +iv+++p+++i ++K + f +++++g+p+gl fe+ +++ s r++++ +l++ s+a+++ + e +
tr|Q94416|Q94416_CAEEL 13 IKSGEYLIVQKIDGeQSRIVRFTPKQKILIEKLK-FVADSAFGKPHGL-FEVSNNQCL-PMSVDRLIEELQLQEASVATSSIDPEVT 96
999******988888*******************.************9.*****9965.66779*****************999988 PP
Gcd10p 88 eee..........ardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpl 164
e + a + ++ +++rQkL+++ + e+Kk+g+s g+e++akl+e +++f+++T+FSq+KY+krK+kK+ +r+ +l++
tr|Q94416|Q94416_CAEEL 97 EPSepsldprvviAPSALKLEPEQKRQKLEMDAVLEMKKQGVS-GQEMVAKLVEGSASFQTRTVFSQSKYIKRKAKKHSDRVLILRP 182
88799*******9889999999*********************.******************************************* PP
Gcd10p 165 dvsllleyllekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneq.pnlsllk 250
+++ll++ ++ kd++++ lr+++l+l+l++a h+g++++v+++t GL++ a++eR+g+ +g +++ih++ +++ +++
tr|Q94416|Q94416_CAEEL 183 TIRLLAKAYYL-KDPDRLAMLRADQLALILQMAGLHHGKNVVVFEQTLGLITSAVIERLGG------TGACIHIHRGAVaQSIPCVH 262
***********.9************************************************......**********9978999*** PP
Gcd10p 251 yfnydaaepehplkkhlktlswlqll 276
+nyd ++ +++l ++k++ + l
tr|Q94416|Q94416_CAEEL 263 SMNYDDNTLSTFLPVRIKCVLAGKHL 288
****9998778877777777655554 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 20008 (8229220 residues searched)
Passed MSV filter: 1339 (0.0669232); expected 400.2 (0.02)
Passed bias filter: 452 (0.022591); expected 400.2 (0.02)
Passed Vit filter: 32 (0.00159936); expected 20.0 (0.001)
Passed Fwd filter: 1 (4.998e-05); expected 0.2 (1e-05)
Initial search space (Z): 20008 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 30859.58
//
[ok]