# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    9.3e-61  205.7   0.0    1.6e-60  204.9   0.0    1.4  1  tr|Q94416|Q94416_CAEEL  Uncharacterized protein OS=Caenorhabd


Domain annotation for each sequence (and alignments):
>> tr|Q94416|Q94416_CAEEL  Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_ZK858.7 PE=1 SV=3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.0   7.9e-65   1.6e-60       2     276 ..      13     288 ..      12     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 7.9e-65
                  Gcd10p   2 IkpnqhvllkLpse.nlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeee 87 
                             Ik++++++++  ++ + +iv+++p+++i ++K + f +++++g+p+gl fe+ +++     s  r++++ +l++ s+a+++ + e +
  tr|Q94416|Q94416_CAEEL  13 IKSGEYLIVQKIDGeQSRIVRFTPKQKILIEKLK-FVADSAFGKPHGL-FEVSNNQCL-PMSVDRLIEELQLQEASVATSSIDPEVT 96 
                             999******988888*******************.************9.*****9965.66779*****************999988 PP

                  Gcd10p  88 eee..........ardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpl 164
                             e +          a +  ++  +++rQkL+++ + e+Kk+g+s g+e++akl+e +++f+++T+FSq+KY+krK+kK+ +r+ +l++
  tr|Q94416|Q94416_CAEEL  97 EPSepsldprvviAPSALKLEPEQKRQKLEMDAVLEMKKQGVS-GQEMVAKLVEGSASFQTRTVFSQSKYIKRKAKKHSDRVLILRP 182
                             88799*******9889999999*********************.******************************************* PP

                  Gcd10p 165 dvsllleyllekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneq.pnlsllk 250
                             +++ll++ ++  kd++++  lr+++l+l+l++a  h+g++++v+++t GL++ a++eR+g+      +g +++ih++   +++ +++
  tr|Q94416|Q94416_CAEEL 183 TIRLLAKAYYL-KDPDRLAMLRADQLALILQMAGLHHGKNVVVFEQTLGLITSAVIERLGG------TGACIHIHRGAVaQSIPCVH 262
                             ***********.9************************************************......**********9978999*** PP

                  Gcd10p 251 yfnydaaepehplkkhlktlswlqll 276
                              +nyd ++ +++l  ++k++   + l
  tr|Q94416|Q94416_CAEEL 263 SMNYDDNTLSTFLPVRIKCVLAGKHL 288
                             ****9998778877777777655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        20008  (8229220 residues searched)
Passed MSV filter:                      1339  (0.0669232); expected 400.2 (0.02)
Passed bias filter:                      452  (0.022591); expected 400.2 (0.02)
Passed Vit filter:                        32  (0.00159936); expected 20.0 (0.001)
Passed Fwd filter:                         1  (4.998e-05); expected 0.2 (1e-05)
Initial search space (Z):              20008  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 30859.58
//
[ok]