# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.8e-62 209.1 0.1 1.7e-61 207.4 0.1 1.8 1 tr|H2YBX2|H2YBX2_CIOSA Uncharacterized protein OS=Ciona savi
0.0037 15.8 0.0 0.0053 15.3 0.0 1.2 1 tr|H2Z0U5|H2Z0U5_CIOSA tRNA (adenine(58)-N(1))-methyltransfe
Domain annotation for each sequence (and alignments):
>> tr|H2YBX2|H2YBX2_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 207.4 0.1 2.9e-65 1.7e-61 2 289 .. 9 265 .. 8 283 .. 0.89
Alignments for each domain:
== domain 1 score: 207.4 bits; conditional E-value: 2.9e-65
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88
I+ n++v+l+ ++ lk v++ pn+ i ++K + f+ +++ g+++g++f+ + + ++ +sl+++++++
tr|H2YBX2|H2YBX2_CIOSA 9 ISLNKTVILD-KNGILKAVKLIPNKMIVFEKLR-FKPDKAEGMNFGTIFKGGYIT---------------TDVDSLDTHADDA---- 74
889*******.888*******************.***************976666...............4567777776554.... PP
Gcd10p 89 eeardnr.eiid.dgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyl 173
+++dnr ++id +g++Q++++e+I e+K+eg++ g+ei+++l+e++++f +KTaFSq+KYlk+KkkKYl++++v++++++l+++ +
tr|H2YBX2|H2YBX2_CIOSA 75 -QGKDNRlSLIDtHGKSQSIKRENIIEMKDEGFT-GEEIVQRLVENSASFADKTAFSQNKYLKKKKKKYLSYVRVHKPNARLITQLY 159
.378999789997788******************.**************************************************** PP
Gcd10p 174 lekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneq.pnlsllkyfnydaaep 259
e ++++ki+++r +t++++l+ an+++g ++ vv++++G++++a++eR+g+ +g+++ +h++e+ pnl ++ +fn+ p
tr|H2YBX2|H2YBX2_CIOSA 160 QE-REPAKICNIRIDTISQILTAANIRHGANVAVVETCSGVVLGAVLERLGG------NGCVVNLHNGEApPNLFAVSHFNF----P 235
**.9************************************************......************9***********....9 PP
Gcd10p 260 ehplkkhlktlswlqllepeedetyeeepe 289
+++++++l+++ + +l ++++ e+e++
tr|H2YBX2|H2YBX2_CIOSA 236 DSYWDDNLHSVPLHKLGPLLAKRSFEDEFP 265
*******99998877655444444444444 PP
>> tr|H2Z0U5|H2Z0U5_CIOSA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Ciona savignyi OX=5151
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.3 0.0 9.2e-07 0.0053 2 53 .. 10 60 .. 9 64 .. 0.92
Alignments for each domain:
== domain 1 score: 15.3 bits; conditional E-value: 9.2e-07
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeil 53
++++++v++ + ++++ ++vk+++ is Kfg+++ +++ig++yg+ f
tr|H2Z0U5|H2Z0U5_CIOSA 10 VEAGDVVIIFMGHDSMFPINVKKGE-ISQTKFGAIKHDQVIGHEYGTKFTCS 60
78999***************99877.9**********************865 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 694 (0.0598689); expected 231.8 (0.02)
Passed bias filter: 214 (0.018461); expected 231.8 (0.02)
Passed Vit filter: 16 (0.00138026); expected 11.6 (0.001)
Passed Fwd filter: 2 (0.000172533); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.03
# Mc/sec: 42313.97
//
[ok]