# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Danio_rerio.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                       -----------
    1.3e-72  245.0   0.1    1.9e-72  244.4   0.1    1.3  1  tr|F1QFE5|F1QFE5_DANRE          tRNA (adenine(58)-N(1))-methyltr
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.25   10.9   0.0    1.3  1  tr|A0A0R4IR49|A0A0R4IR49_DANRE  Si:ch211-165e15.1 OS=Danio rerio


Domain annotation for each sequence (and alignments):
>> tr|F1QFE5|F1QFE5_DANRE  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Danio rerio OX=7955 G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.4   0.1   1.5e-76   1.9e-72       2     292 ..      14     284 ..      13     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 244.4 bits;  conditional E-value: 1.5e-76
                  Gcd10p   2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88 
                             I+ +++v+lk   e++k vqv++++++ ++K++ f +++++g+ yg++fei+   + ++    ++v   ++  +sl+++ea      
  tr|F1QFE5|F1QFE5_DANRE  14 IAYGDYVVLK-RGEVFKSVQVENKKKVIFEKQW-FFMDNAVGQLYGTMFEIVAGGSLKH----KPV---KRAGDSLDSKEA------ 85 
                             899*******.677*******************.*********************6644....345...777888887765...... PP

                  Gcd10p  89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleylle 175
                               ++dnr+i+ddg++QkLt+++Ie+LK++g + g+ei+++l++++t+f++KT+F+qeKY+k+KkkKY + +tvl+++++ll+ +++ 
  tr|F1QFE5|F1QFE5_DANRE  86 --GQDNRHIVDDGRSQKLTRDDIETLKEQGLK-GQEIVQQLIDNSTTFKDKTEFAQEKYIKKKKKKYESDITVLKPSTRLLAMMYHG 169
                             ..89****************************.****************************************************** PP

                  Gcd10p 176 kkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaaepehp 262
                              ++++ki++lr +tl+++l+l+n+hag++++v+++++GL++++++eRmg+       g++++++++  p  + ++ f++    p+h+
  tr|F1QFE5|F1QFE5_DANRE 170 -REPGKICHLRYDTLAQMLTLGNIHAGSKIIVFETCAGLVLGSVMERMGG------FGSVIQMFPGGGPTRAGMESFGF----PSHF 245
                             .9************************************************......***********************....8888 PP

                  Gcd10p 263 lkkh....lktlswl.......qllepeedetyeeepeevs 292
                              ++     l  +          +l e++++++ +ee++  +
  tr|F1QFE5|F1QFE5_DANRE 246 HQTLhefpLCKV--NavlagklDLSEKDTENSRSEETAAEK 284
                             886422222222..222343334444444444444444333 PP

>> tr|A0A0R4IR49|A0A0R4IR49_DANRE  Si:ch211-165e15.1 OS=Danio rerio OX=7955 GN=si:ch211-165e15.1 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.9e-05      0.25     165     215 ..     500     552 ..     493     611 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
                          Gcd10p 165 dvslll..eyllekkdaqkilelreetlglllslanvhaggryLvvDdtgGLl 215
                                     d+++ll  +++l+++ +q++ +lr++ l+l    + v ++gr L  ++t+ ++
  tr|A0A0R4IR49|A0A0R4IR49_DANRE 500 DIQQLLdgKFYLADQLVQRVSKLRDDLLSLRSECSSVYSKGRTLTSEQTKMMI 552
                                     55555422699999*********************************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        25687  (13798380 residues searched)
Passed MSV filter:                      1796  (0.0699186); expected 513.7 (0.02)
Passed bias filter:                      541  (0.0210612); expected 513.7 (0.02)
Passed Vit filter:                        50  (0.00194651); expected 25.7 (0.001)
Passed Fwd filter:                         2  (7.78604e-05); expected 0.3 (1e-05)
Initial search space (Z):              25687  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.01s 00:00:00.33 Elapsed: 00:00:00.11
# Mc/sec: 37631.95
//
[ok]