# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Dictyostelium_discoideum.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
      1e-63  214.7  11.8      1e-63  214.7  11.8    1.8  2  sp|Q54UB1|TRM6_DICDI  tRNA (adenine(58)-N(1))-methyltransfera


Domain annotation for each sequence (and alignments):
>> sp|Q54UB1|TRM6_DICDI  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7  11.8   8.2e-68     1e-63       1     285 [.      34     320 ..      34     336 .. 0.81
   2 ?   -2.6   0.2      0.12   1.6e+03     106     106 ..     479     479 ..     403     519 .. 0.58

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 8.2e-68
                Gcd10p   1 lIkpnqhvllkLpse.nlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88 
                           +Ik+++hv+l+++++ ++ +++vk ++++++gK++ + +n+iig  y++ f++ +++++     l+ + ++e      +++ ++  e +
  sp|Q54UB1|TRM6_DICDI  34 IIKEGDHVILDINNGeKFSVIKVKLGSKVKIGKKQ-ILINSIIGESYYSSFQVSNEKNT-----LERITQKEI-----DDRLNNLVELN 111
                           59************99*******************.******************99954.....444533333.....33333333334 PP

                Gcd10p  89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyllekk 177
                           ++ +dnr++  ++++QkLt+e+I+e+K++g++ ++ iI++++e++++f++KT+FSq KYlk+K kKY + +++ +++ ++l+e +++ k
  sp|Q54UB1|TRM6_DICDI 112 QNDADNRNLDQNNTAQKLTQEDINEMKQKGTD-SNTIIKTIVENSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYK-K 198
                           4579****************************.******************************************************.9 PP

                Gcd10p 178 daqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaaepehplkkh 266
                           d  ki+ lr +++g+ll+l+n++a++++Lvv++++GL+++++aeRm++      +gti   + ++ p+ls++++f+++++  +++   +
  sp|Q54UB1|TRM6_DICDI 199 DSRKICGLRFDSFGQLLTLGNIRANSQVLVVETCMGLVTGSIAERMNG------QGTILSAYIGKGPSLSIVNNFGFNTDVLNTIYPFN 281
                           ************************************************......***********************443333333334 PP

                Gcd10p 267 lktlswlqlle....................peedetye 285
                           l++ s+l+  e                    +e++++++
  sp|Q54UB1|TRM6_DICDI 282 LNITSVLNKGEdisklpptassgiydkqvkeKEKEKEKD 320
                           777777733334555555444443333221133333333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.12
                Gcd10p 106 L 106
                           L
  sp|Q54UB1|TRM6_DICDI 479 L 479
                           0 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        12739  (6856946 residues searched)
Passed MSV filter:                      4129  (0.324123); expected 254.8 (0.02)
Passed bias filter:                      249  (0.0195463); expected 254.8 (0.02)
Passed Vit filter:                        38  (0.00298297); expected 12.7 (0.001)
Passed Fwd filter:                         1  (7.84991e-05); expected 0.1 (1e-05)
Initial search space (Z):              12739  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.01s 00:00:00.31 Elapsed: 00:00:00.09
# Mc/sec: 22856.49
//
[ok]