# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.3e-62 208.6 0.1 1.2e-61 208.0 0.1 1.2 1 tr|Q8MS69|Q8MS69_DROME tRNA (adenine(58)-N(1))-methyltransfe
Domain annotation for each sequence (and alignments):
>> tr|Q8MS69|Q8MS69_DROME tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Drosophila melanogast
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 208.0 0.1 9e-66 1.2e-61 2 289 .. 10 303 .. 9 318 .. 0.82
Alignments for each domain:
== domain 1 score: 208.0 bits; conditional E-value: 9e-66
Gcd10p 2 IkpnqhvllkLpsenlkivqvkp.nttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeee 87
I+ +++++++ ++ +k++++ +tt +LgK+ ++l++++++pyg+tf+++ k+++ k+ a+ +++ +l +e++ ++
tr|Q8MS69|Q8MS69_DROME 10 IQLGDYIVIQ-RQKYTKLQKFGSlDTTATLGKET-LELKSLLDQPYGSTFKMCVKETKPGKRG-----AQRQHTLELCSETE--LRS 87
999*******.777*******887**********.********************98766663.....23333333333332..233 PP
Gcd10p 88 eee.......ardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvs 167
++e ++dnr+i ddg++Q+L+ e+I++L++e+ + +++iI+kl+e++++f+++T++SqeKYl++K+kKY++ +++++++++
tr|Q8MS69|Q8MS69_DROME 88 TREvlgisssGADNRDIRDDGEAQTLKPEDIAQLREECND-SSKIIEKLVENSKTFHNRTEYSQEKYLLKKEKKYFEFVQIRQPTIR 173
33345666669**************************999.9********************************************* PP
Gcd10p 168 llleyllekkdaqkilelreetlglllslanvhaggryLvvDd.tgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfn 253
l+l+++++ +d +k++ +r +tl++++s++ v+ g yL++++ t+GLl aa+++ +g +egt++++h+++ p+ ++l +++
tr|Q8MS69|Q8MS69_DROME 174 LMLDIFYR-QDSEKVMGIRVDTLSQIISYSGVCGFGSYLLYESgTNGLLPAAMLNSIGA----GTEGTLVHMHPGNVPQKQALSALK 255
********.8*************************************************....9*********************** PP
Gcd10p 254 ydaaepehplkkh..lktlswlqlle..............peedetyeeepe 289
+ p ++++++ ++ +s+l+ + p+e+e +e++ e
tr|Q8MS69|Q8MS69_DROME 256 L----PLEQQQRCvsVNLYSVLREFYqggdakatdipvvePSENEPQETQLE 303
*....66666665446777777433334444444444433444444444444 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 13786 (7394964 residues searched)
Passed MSV filter: 1142 (0.0828377); expected 275.7 (0.02)
Passed bias filter: 326 (0.0236472); expected 275.7 (0.02)
Passed Vit filter: 22 (0.00159582); expected 13.8 (0.001)
Passed Fwd filter: 1 (7.25374e-05); expected 0.1 (1e-05)
Initial search space (Z): 13786 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.07
# Mc/sec: 31692.70
//
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