# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Macaca_mulatta.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-72 244.9 1.0 1.6e-72 244.4 0.5 1.5 1 tr|F6RWA5|F6RWA5_MACMU tRNA (adenine(58)-N(1))-methyltr
------ inclusion threshold ------
0.24 10.7 1.0 0.34 10.2 1.0 1.2 1 tr|A0A1D5QQR7|A0A1D5QQR7_MACMU Sodium/potassium-transporting AT
Domain annotation for each sequence (and alignments):
>> tr|F6RWA5|F6RWA5_MACMU tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Macaca mulatta OX=954
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 244.4 0.5 1.6e-76 1.6e-72 2 266 .. 20 254 .. 19 322 .. 0.85
Alignments for each domain:
== domain 1 score: 244.4 bits; conditional E-value: 1.6e-76
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88
I+ +++v+lk ++++k vqv++ ++++++K++ f+l+++ig+ yg+tfe+ + + + k+ +++e +ae++
tr|F6RWA5|F6RWA5_MACMU 20 IRDGDFVVLK-REDVFKAVQVQRRKKVTFEKQW-FYLDNVIGHSYGTTFEVTSGGSLQPKK---------KREEPTAETK------- 88
999*******.777*******************.********************9654433.........3333333332....... PP
Gcd10p 89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleylle 175
e+++dnr+i+ddg++QkLt+++I++LK++g++ g+ei+++l+e++t+f++KT+F+q+KY+k+KkkKY +tv +++++ l ++++
tr|F6RWA5|F6RWA5_MACMU 89 EAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK-GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYA 174
2389****************************.****************************************************** PP
Gcd10p 176 kkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaaepehp 262
++++ki ++r +tl+++l+l+n++ag++++v+++++GL+++a++eRmg+ g+i++++++ p ++ +f++ p+++
tr|F6RWA5|F6RWA5_MACMU 175 -REPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGG------FGSIIQLYPGGGPVRAATACFGF----PKSF 250
.9************************************************......***********************....7777 PP
Gcd10p 263 lkkh 266
l+
tr|F6RWA5|F6RWA5_MACMU 251 LNGL 254
6643 PP
>> tr|A0A1D5QQR7|A0A1D5QQR7_MACMU Sodium/potassium-transporting ATPase subunit beta OS=Macaca mulatta OX=9544 GN=ATP1B4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 1.0 3.2e-05 0.34 50 90 .. 31 71 .. 5 105 .. 0.69
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 3.2e-05
Gcd10p 50 feildkreeeeksrlrvvpaaeleaeslaeeeaeeeeeeee 90
+ +++e ee+ r+ vvp++e+e+e+ ++ee+eeee+eee
tr|A0A1D5QQR7|A0A1D5QQR7_MACMU 31 YLADEEEEAEEEARVTVVPKSEEEEEEEEKEEEEEEEKEEE 71
3344455555555*******999999999888887777655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 21211 (10888574 residues searched)
Passed MSV filter: 1260 (0.0594031); expected 424.2 (0.02)
Passed bias filter: 433 (0.0204139); expected 424.2 (0.02)
Passed Vit filter: 35 (0.00165009); expected 21.2 (0.001)
Passed Fwd filter: 2 (9.42907e-05); expected 0.2 (1e-05)
Initial search space (Z): 21211 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.09
# Mc/sec: 36295.25
//
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