# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.1e-41  142.0   0.0    1.5e-41  141.6   0.0    1.3  1  tr|A9UTS9|A9UTS9_MONBE  Predicted protein OS=Monosiga brevico


Domain annotation for each sequence (and alignments):
>> tr|A9UTS9|A9UTS9_MONBE  Predicted protein OS=Monosiga brevicollis OX=81824 GN=23559 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   1.6e-45   1.5e-41      26     236 ..      24     210 ..      18     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 1.6e-45
                  Gcd10p  26 ttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeeeeeardnreiiddgarQkLtkeeIe 112
                              ++++gK + f+++++ig  yg  +++ ++r       +  vp+++++ e+ a            + dnr ii  +a+Q L+ + I+
  tr|A9UTS9|A9UTS9_MONBE  24 RHVRMGKIR-FNSKHLIGTAYGEFYRVDRDR------LIPYVPEEDNDDEDAAV-----------EGDNRGIIATKANQGLDDQAIQ 92 
                             6899*****.****************99998......34556554444444433...........469******************* PP

                  Gcd10p 113 eLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyllekkdaqkilelreetlglllslanv 199
                             +LK eg++ g++++++l+e++++f+qK aF +eKY+krKk+ +++ +++l++++++l + +++ + ++ki  +r +tl+ ll  anv
  tr|A9UTS9|A9UTS9_MONBE  93 NLKSEGVT-GEALVQTLVENSKTFKQKHAFTREKYIKRKKEIHVNAVQILRPTIRNLHDAFYQ-HFPDKIASIRVDTLASLLMRANV 177
                             ********.******************************************************.8********************** PP

                  Gcd10p 200 haggryLvvDdtgGLlvaalaeRmgifessakegtit 236
                             ++++r++v+++++GL++aa+a ++g     +++ ti+
  tr|A9UTS9|A9UTS9_MONBE 178 QPHSRVVVFETCSGLMTAAVARQLGA----ESKATIV 210
                             *************************9....5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                         9188  (5511963 residues searched)
Passed MSV filter:                       542  (0.05899); expected 183.8 (0.02)
Passed bias filter:                      241  (0.0262299); expected 183.8 (0.02)
Passed Vit filter:                        24  (0.0026121); expected 9.2 (0.001)
Passed Fwd filter:                         1  (0.000108838); expected 0.1 (1e-05)
Initial search space (Z):               9188  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.05
# Mc/sec: 33071.78
//
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