# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Nematostella_vectensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    8.4e-61  206.1   0.3    1.2e-57  195.8   0.3    2.2  1  tr|A7SIP3|A7SIP3_NEMVE  Predicted protein (Fragment) OS=Nemat
  ------ inclusion threshold ------
      0.073   12.6   0.1       0.13   11.8   0.0    1.4  2  tr|A7RHG9|A7RHG9_NEMVE  tRNA (adenine(58)-N(1))-methyltransfe


Domain annotation for each sequence (and alignments):
>> tr|A7SIP3|A7SIP3_NEMVE  Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g119805 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.3   9.5e-62   1.2e-57       2     288 ..      16     268 ..      15     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 9.5e-62
                  Gcd10p   2 IkpnqhvllkLpse.nlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeee 87 
                             I+++++v+lk  s+ nl+ivqv ++ +i +++   f l+++ig +yg+tfe+ +++       +r+           +         
  tr|A7SIP3|A7SIP3_NEMVE  16 ITEGKYVILK--SGnNLRIVQVLKDRKIAFERLH-FFLDDAIGCHYGTTFEVDRDK-------VRPC---------WD--------- 74 
                             99********..776*******************.****************99888.......5555.........22......... PP

                  Gcd10p  88 eeeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlk...rftvlpldvsllle 171
                                +++ + i  dg +QkL+ke+I++LK +g s gk+i+++l++++++ +++T+FS++KY krK kKY++   rft++++++ ll+e
  tr|A7SIP3|A7SIP3_NEMVE  75 ---TESSQPIKCDGDSQKLSKEDIQSLKAQGLS-GKDIVDQLVQNSETYKDRTEFSKAKYRKRKSKKYVQhiiRFTIHKPNTCLLAE 157
                             ...3456778889********************.**********************************876668************* PP

                  Gcd10p 172 yllekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaae 258
                             ++++ k +qki++lr ++l+++l+lan++a++r+Lv+++++G++v+++++Rmg+       g+i++ h+++ p   +++y+n+    
  tr|A7SIP3|A7SIP3_NEMVE 158 TYYS-KMPQKICDLRPDALSQILTLANIRANSRVLVMEQCQGMIVGSILDRMGG------YGSIVQAHNGDFPTRIAMDYYNF---- 233
                             ****.9************************************************......***********************.... PP

                  Gcd10p 259 pehplkkh..lktlswlqlle...peedetyeeep 288
                             ++++l+    +  +++ +l+e   p+e+ + ++e 
  tr|A7SIP3|A7SIP3_NEMVE 234 SSEFLSIVhgFPLIKLNTLTEktaPDEEIKGKNED 268
                             77777743332233333333332233333333333 PP

>> tr|A7RHG9|A7RHG9_NEMVE  tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Nematostella vectensis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05      0.13       1      48 [.       9      55 ..       9      60 .. 0.93
   2 ?   -3.7   0.0      0.57     7e+03      49      66 ..     130     145 ..     122     170 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
                  Gcd10p  1 lIkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygl 48
                            +I ++++v+l L ++n+  + v+ ++ ++  Kfg+fp ++++g+++g+
  tr|A7RHG9|A7RHG9_NEMVE  9 TICEGDTVILYLGHNNMHSIVVTAGK-VHQTKFGAFPHSDMVGKQFGS 55
                            6999****************998876.999****************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.57
                  Gcd10p  49 tfeildkreeeeksrlrv 66 
                             t+e +++r++++++  + 
  tr|A7RHG9|A7RHG9_NEMVE 130 TYEFHEERSKQARK--EF 145
                             66666666555444..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        24428  (8257945 residues searched)
Passed MSV filter:                      1183  (0.048428); expected 488.6 (0.02)
Passed bias filter:                      426  (0.017439); expected 488.6 (0.02)
Passed Vit filter:                        33  (0.00135091); expected 24.4 (0.001)
Passed Fwd filter:                         2  (8.18733e-05); expected 0.2 (1e-05)
Initial search space (Z):              24428  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.07
# Mc/sec: 35391.19
//
[ok]