# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                       -----------
    2.7e-71  240.5   0.9    4.7e-71  239.7   0.5    1.6  1  tr|H2QJX7|H2QJX7_PANTR          tRNA (adenine(58)-N(1))-methyltr
  ------ inclusion threshold ------
       0.24   10.8   1.0       0.34   10.3   1.0    1.2  1  tr|A0A2I3RP28|A0A2I3RP28_PANTR  Sodium/potassium-transporting AT


Domain annotation for each sequence (and alignments):
>> tr|H2QJX7|H2QJX7_PANTR  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Pan troglodytes OX=95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.7   0.5   4.1e-75   4.7e-71       2     266 ..      20     254 ..      19     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: 239.7 bits;  conditional E-value: 4.1e-75
                  Gcd10p   2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88 
                             I+ +++v+lk  ++++k vqv++ ++++++K++ f+l+++ig+ yg+ fe+ +  + + k+         +++e +ae++       
  tr|H2QJX7|H2QJX7_PANTR  20 IRDGDFVVLK-REDVFKAVQVQRRKKVTFEKQW-FYLDNVIGHSYGTAFEVTSGGSLQPKK---------KREEPTAETK------- 88 
                             999*******.777*******************.********************9654433.........3333333332....... PP

                  Gcd10p  89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleylle 175
                             e+++dnr+i+ddg++QkLt+++I++LK++g++ g+ei+++l+e++t+f++KT+F+q+KY+k+KkkKY   +tv +++++ l  ++++
  tr|H2QJX7|H2QJX7_PANTR  89 EAGTDNRNIVDDGKSQKLTQDDIKALKDKGIK-GEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYA 174
                             2389****************************.****************************************************** PP

                  Gcd10p 176 kkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaaepehp 262
                              ++++ki ++r +tl+++l+l+n++ag++++v+++++GL+++a++eRmg+       g+i++++++  p  ++  +f++    p+++
  tr|H2QJX7|H2QJX7_PANTR 175 -REPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAVMERMGG------FGSIIQLYPGGGPVRAATACFGF----PKSF 250
                             .9************************************************......***********************....6666 PP

                  Gcd10p 263 lkkh 266
                             l+  
  tr|H2QJX7|H2QJX7_PANTR 251 LSGL 254
                             5543 PP

>> tr|A0A2I3RP28|A0A2I3RP28_PANTR  Sodium/potassium-transporting ATPase subunit beta OS=Pan troglodytes OX=9598 GN=ATP1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0     3e-05      0.34      46      90 ..      15      71 ..       4     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3e-05
                          Gcd10p 46 ygltfeildkreeeeks............rlrvvpaaeleaeslaeeeaeeeeeeee 90
                                    y   +++ d +e ++++            r+ vvp++e+e+e+ ++ee+eeee+eee
  tr|A0A2I3RP28|A0A2I3RP28_PANTR 15 YSYRYRLDDPDEANQNYladeeeeaeeeaRVTVVPKSEEEEEEEEKEEEEEEEKEEE 71
                                    55555555555444444555555555556*******999999999888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        23008  (11942255 residues searched)
Passed MSV filter:                      1363  (0.0592403); expected 460.2 (0.02)
Passed bias filter:                      470  (0.0204277); expected 460.2 (0.02)
Passed Vit filter:                        40  (0.00173853); expected 23.0 (0.001)
Passed Fwd filter:                         2  (8.69263e-05); expected 0.2 (1e-05)
Initial search space (Z):              23008  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.01s 00:00:00.30 Elapsed: 00:00:00.10
# Mc/sec: 35826.76
//
[ok]