# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Saccharomyces_cerevisiae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-102 340.2 4.2 3.7e-102 339.9 4.2 1.1 1 sp|P41814|TRM6_YEAST tRNA (adenine(58)-N(1))-methyltransfer
0.0024 15.5 0.1 0.007 14.0 0.0 1.7 2 sp|P46959|TRM61_YEAST tRNA (adenine(58)-N(1))-methyltransfer
Domain annotation for each sequence (and alignments):
>> sp|P41814|TRM6_YEAST tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Saccharomyces cerevisia
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 339.9 4.2 1.2e-105 3.7e-102 1 300 [] 6 329 .. 6 329 .. 0.92
Alignments for each domain:
== domain 1 score: 339.9 bits; conditional E-value: 1.2e-105
Gcd10p 1 lIkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeks..............rlrvvpaaeleae 75
+I nqhv+++Lps+n+kiv++kpnt++sLgKfg+f++n+iig+p+gltfei+++ ee ++ ++r++++ + ++
sp|P41814|TRM6_YEAST 6 TIDFNQHVIVRLPSKNYKIVELKPNTSVSLGKFGAFEVNDIIGYPFGLTFEIYYDGEEVSSDenrdskpknkipigKVRLLSQ--EIKD 92
6999***************************************************9887777899999999888888888833..2222 PP
Gcd10p 76 slaeeeaeeeeeeee...................ardnreiiddga.rQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSq 144
+ +++++ ++ e +++n+++++ g+ +Q+Lt eeIe++K+e+ s +keiI+k+++sh++f++KT++Sq
sp|P41814|TRM6_YEAST 93 VNNDKDDGQS----EpplsikeksvslelssidsSATNQNLVNMGSkAQELTVEEIEKMKQESLS-SKEIIDKIIKSHKSFHNKTVYSQ 176
2222222222....12345678899******************8888******************.*********************** PP
Gcd10p 145 eKYlkrKkkKYlkrftvlpldvsllleyllekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgif.essake 232
eKY++rKk+K++k+ftv++l++s+ll++l++k d+q++l++++e++g+ll+lan++++g+yL++D+tgGLlv++l+eRm++ ++s+++
sp|P41814|TRM6_YEAST 177 EKYVNRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLERMFGGdNESKSK 265
***************************************************************************************** PP
Gcd10p 233 gtitliheneqpnlsllkyfnydaaepehplkkhlktlswlqllepeedetyeeepeevseeelaelk 300
g++++ihene++nl+llk+ ny +e+++k+h++t+s+l+++ep + ++ +++++++++ee ++lk
sp|P41814|TRM6_YEAST 266 GKVIVIHENEHANLDLLKFANY----SEKFIKEHVHTISLLDFFEPPTLQEIQSRFTPLPKEEARALK 329
**********************....9***********************************998876 PP
>> sp|P46959|TRM61_YEAST tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Saccharomyces cerevisiae
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.0 2.3e-06 0.007 2 66 .. 13 75 .. 12 95 .. 0.84
2 ? -1.4 0.1 0.11 3.3e+02 30 76 .. 243 290 .. 235 340 .. 0.69
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 2.3e-06
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrv 66
Ik+++ l+ + ++n+k v++ ++ + ++gsfp ++iig+pyg++ i k ++ ++ ++v
sp|P46959|TRM61_YEAST 13 IKEGDLTLIWVSRDNIKPVRMHSEE-VFNTRYGSFPHKDIIGKPYGSQIAIRTKGSN-KFAFVHV 75
899999999999********99888.5568*****************9999988854.4554554 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.11
Gcd10p 30 LgKfg..sfplnliigrpygltfeildkreeeeksrlrvvpaaeleaes 76
L+K+g +++ +i gr+y++ +++++ ++ +rlr ++ ++l+ +
sp|P46959|TRM61_YEAST 243 LEKYGwtDVEMVEIQGRQYESRRQMVRSLNDA-LERLRDIKRHKLQGVE 290
66666223556688899999999998888664.4568888776655433 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 6049 (2936363 residues searched)
Passed MSV filter: 591 (0.0977021); expected 121.0 (0.02)
Passed bias filter: 109 (0.0180195); expected 121.0 (0.02)
Passed Vit filter: 6 (0.000991899); expected 6.0 (0.001)
Passed Fwd filter: 2 (0.000330633); expected 0.1 (1e-05)
Initial search space (Z): 6049 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.03
# Mc/sec: 29363.63
//
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