# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-69 234.2 1.3 2.9e-69 234.2 1.3 1.6 2 tr|W4YE41|W4YE41_STRPU Uncharacterized protein OS=Strongyloc
------ inclusion threshold ------
0.018 14.8 5.6 1.3 8.8 0.3 2.3 2 tr|W4Y7R9|W4Y7R9_STRPU Uncharacterized protein OS=Strongyloc
2.9 7.6 5.1 2.2 8.0 0.7 2.6 3 tr|W4XNP3|W4XNP3_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4YE41|W4YE41_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 234.2 1.3 3e-73 2.9e-69 2 291 .. 7 271 .. 6 283 .. 0.85
2 ? -2.9 0.3 0.46 4.4e+03 271 289 .. 378 396 .. 348 412 .. 0.57
Alignments for each domain:
== domain 1 score: 234.2 bits; conditional E-value: 3e-73
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88
+++++ v+lk + lk+++v ++ ++ L+K f+l i+g+pyg+t+e+++ + ++v+ +++ +++lae+ +
tr|W4YE41|W4YE41_STRPU 7 VAEGDNVILK-KGKLLKVYKVIKKAKVFLEKRH-FSLAPIVGHPYGSTWELQSGS------LVQVL--ENTVSQDLAEQID------ 77
7899******.555*******************.*******************99......34555..4444444554443...... PP
Gcd10p 89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleylle 175
+ ++dnr i d +++QkL++++I +L+++g s g+ei+++l+e++++f+++T++S++KYlk+K++KY+ rf vl++ ++l++e++++
tr|W4YE41|W4YE41_STRPU 78 KGGADNRGIFDGDTTQKLDNDDIMNLREQGKS-GQEIVDQLVENSSTFNERTVYSKAKYLKKKRNKYIVRFVVLRPCIRLMCEMYFN 163
3499****************************.****************************************************** PP
Gcd10p 176 kkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnlsllkyfnydaaepehp 262
k ++k++++r +t+++lls anv++g++++v+++++GLlvaa++eR+g+ +gt++++h+++qp s l++fn++++ ++++
tr|W4YE41|W4YE41_STRPU 164 -KAPSKVIQIRIDTMAQLLSAANVQSGSKVMVLENCQGLLVAAIMERLGG------NGTVVHFHTEDQPMNSSLQAFNFSQK-SKEM 242
.9************************************************......***********************544.4555 PP
Gcd10p 263 lkkh.lktlswlqllepeedetyeeepeev 291
l++ lk + +l+ ++ et +eep++
tr|W4YE41|W4YE41_STRPU 243 LRTFnLKDVY-DNLILKKPVETINEEPSQS 271
5544233333.2333344444444455544 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.46
Gcd10p 271 swlqllepeedetyeeepe 289
+++++le++ d ++ +e++
tr|W4YE41|W4YE41_STRPU 378 QFVKFLESDMDYNKRKEKK 396
3333333333333333333 PP
>> tr|W4Y7R9|W4Y7R9_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 8.8 0.3 0.00013 1.3 141 165 .. 599 623 .. 588 637 .. 0.90
2 ? 8.0 0.8 0.00022 2.1 141 165 .. 1308 1332 .. 1301 1342 .. 0.91
Alignments for each domain:
== domain 1 score: 8.8 bits; conditional E-value: 0.00013
Gcd10p 141 aFSqeKYlkrKkkKYlkrftvlpld 165
++S KYl K+kKY+ r+++ +ld
tr|W4Y7R9|W4Y7R9_STRPU 599 EHSAGKYLAAKTKKYMLRLKISKLD 623
68999*****************998 PP
== domain 2 score: 8.0 bits; conditional E-value: 0.00022
Gcd10p 141 aFSqeKYlkrKkkKYlkrftvlpld 165
++S KYl K+kKY+ r+++ +ld
tr|W4Y7R9|W4Y7R9_STRPU 1308 EHSAGKYLAAKTKKYMLRLKISKLD 1332
68999****************9998 PP
>> tr|W4XNP3|W4XNP3_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 0.18 1.7e+03 234 284 .. 62 116 .. 46 124 .. 0.69
2 ? -0.3 0.0 0.075 7.1e+02 234 289 .. 194 253 .. 177 266 .. 0.67
3 ? 8.0 0.7 0.00023 2.2 141 165 .. 776 800 .. 769 812 .. 0.91
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.18
Gcd10p 234 tit.liheneqpnlsllkyfnydaae...pehplkkhlktlswlqllepeedety 284
i+ ++++ +++ ++ll +ny++++ + ++l+++l+ l +++l e +++
tr|W4XNP3|W4XNP3_STRPU 62 HIVkHLNNVNEALVELLIKWNYNQRDgteTRSILASKLRELRLVELGERLSEDIF 116
333033344448899*******999988888888888998888888776666555 PP
== domain 2 score: -0.3 bits; conditional E-value: 0.075
Gcd10p 234 tit.liheneqpnlsllkyfnydaae...pehplkkhlktlswlqllepeedetyeeepe 289
i+ ++++ +++ ++ll +ny++++ + ++l+++l+ l +++l e ++ +y +++
tr|W4XNP3|W4XNP3_STRPU 194 HIVkHLNNVNEALVELLIKWNYNQRDgteTRSILASKLRELRLVELGERLSEGKYIPNQQ 253
333033344448999*******99999888888999999999998888666555543333 PP
== domain 3 score: 8.0 bits; conditional E-value: 0.00023
Gcd10p 141 aFSqeKYlkrKkkKYlkrftvlpld 165
++S KYl K+kKY+ r+++ +ld
tr|W4XNP3|W4XNP3_STRPU 776 EHSAGKYLAAKTKKYMLRLKISKLD 800
68999****************9998 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 1969 (0.0688606); expected 571.9 (0.02)
Passed bias filter: 619 (0.0216479); expected 571.9 (0.02)
Passed Vit filter: 58 (0.0020284); expected 28.6 (0.001)
Passed Fwd filter: 3 (0.000104917); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.36u 0.01s 00:00:00.37 Elapsed: 00:00:00.13
# Mc/sec: 32921.64
//
[ok]