# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      2e-45  155.8   8.9    3.7e-45  154.9   8.9    1.4  1  tr|I7M7M0|I7M7M0_TETTS  Eukaryotic initiation factor 3, gamma


Domain annotation for each sequence (and alignments):
>> tr|I7M7M0|I7M7M0_TETTS  Eukaryotic initiation factor 3, gamma subunit OS=Tetrahymena thermophila (strain SB210) OX=31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   8.9   1.4e-49   3.7e-45       1     262 [.      77     317 ..      77     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 1.4e-49
                  Gcd10p   1 lIkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeee 87 
                             +Ik n++vll  +++n kiv++k+n++ +  K+  +++++i+g++y++ +e+ +++   + +          + +++ + e++ eee
  tr|I7M7M0|I7M7M0_TETTS  77 VIKGNEYVLLIDNRDNRKIVNLKENKKTKWRKKM-ISMKDIVGKEYNVVYEYSNDQIVYDPY----------NFNQFYNYEENYEEE 152
                             6999******999********************9.******************999543333..........333333333344445 PP

                  Gcd10p  88 eeeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyll 174
                             ++e+rdnr+i +d++ QkL++eeIe +Kk+   + +eiI+k+ e++ +f+q+TaFS+eKYl+rKk+KY+ +ftvl+ ++ +++e+l+
  tr|I7M7M0|I7M7M0_TETTS 153 QSEQRDNRNIFNDNSVQKLSNEEIELMKKDPNISNSEIIKKIYENNDKFNQRTAFSKEKYLQRKKEKYFFYFTVLKTTPLNVVETLY 239
                             5569**************************6666***************************************************** PP

                  Gcd10p 175 ekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneq.pnlsllkyfnydaaepe 260
                             + ++++ +  +r +++++ +++an++ g+++ ++D+t+G +++  + R+++      +g+i  + e+    ++++  ++n     p+
  tr|I7M7M0|I7M7M0_TETTS 240 Q-ENPKLVNYMRGDAFSMFMHYANIREGSNIALFDNTKGAILGGAVIRLNG------KGKIHYMKEKMPfNQITCYSQMNV----PQ 315
                             *.7************************************************......888887777766566667777776....44 PP

                  Gcd10p 261 hp 262
                             h 
  tr|I7M7M0|I7M7M0_TETTS 316 HL 317
                             43 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        26971  (16912921 residues searched)
Passed MSV filter:                      7797  (0.289088); expected 539.4 (0.02)
Passed bias filter:                      262  (0.00971414); expected 539.4 (0.02)
Passed Vit filter:                        31  (0.00114938); expected 27.0 (0.001)
Passed Fwd filter:                         1  (3.70769e-05); expected 0.3 (1e-05)
Initial search space (Z):              26971  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.02s 00:00:00.55 Elapsed: 00:00:00.19
# Mc/sec: 26704.61
//
[ok]