# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-45 155.8 8.9 3.7e-45 154.9 8.9 1.4 1 tr|I7M7M0|I7M7M0_TETTS Eukaryotic initiation factor 3, gamma
Domain annotation for each sequence (and alignments):
>> tr|I7M7M0|I7M7M0_TETTS Eukaryotic initiation factor 3, gamma subunit OS=Tetrahymena thermophila (strain SB210) OX=31
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 154.9 8.9 1.4e-49 3.7e-45 1 262 [. 77 317 .. 77 352 .. 0.86
Alignments for each domain:
== domain 1 score: 154.9 bits; conditional E-value: 1.4e-49
Gcd10p 1 lIkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeee 87
+Ik n++vll +++n kiv++k+n++ + K+ +++++i+g++y++ +e+ +++ + + + +++ + e++ eee
tr|I7M7M0|I7M7M0_TETTS 77 VIKGNEYVLLIDNRDNRKIVNLKENKKTKWRKKM-ISMKDIVGKEYNVVYEYSNDQIVYDPY----------NFNQFYNYEENYEEE 152
6999******999********************9.******************999543333..........333333333344445 PP
Gcd10p 88 eeeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyll 174
++e+rdnr+i +d++ QkL++eeIe +Kk+ + +eiI+k+ e++ +f+q+TaFS+eKYl+rKk+KY+ +ftvl+ ++ +++e+l+
tr|I7M7M0|I7M7M0_TETTS 153 QSEQRDNRNIFNDNSVQKLSNEEIELMKKDPNISNSEIIKKIYENNDKFNQRTAFSKEKYLQRKKEKYFFYFTVLKTTPLNVVETLY 239
5569**************************6666***************************************************** PP
Gcd10p 175 ekkdaqkilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneq.pnlsllkyfnydaaepe 260
+ ++++ + +r +++++ +++an++ g+++ ++D+t+G +++ + R+++ +g+i + e+ ++++ ++n p+
tr|I7M7M0|I7M7M0_TETTS 240 Q-ENPKLVNYMRGDAFSMFMHYANIREGSNIALFDNTKGAILGGAVIRLNG------KGKIHYMKEKMPfNQITCYSQMNV----PQ 315
*.7************************************************......888887777766566667777776....44 PP
Gcd10p 261 hp 262
h
tr|I7M7M0|I7M7M0_TETTS 316 HL 317
43 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 26971 (16912921 residues searched)
Passed MSV filter: 7797 (0.289088); expected 539.4 (0.02)
Passed bias filter: 262 (0.00971414); expected 539.4 (0.02)
Passed Vit filter: 31 (0.00114938); expected 27.0 (0.001)
Passed Fwd filter: 1 (3.70769e-05); expected 0.3 (1e-05)
Initial search space (Z): 26971 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.53u 0.02s 00:00:00.55 Elapsed: 00:00:00.19
# Mc/sec: 26704.61
//
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