# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Gcd10p.hmm.txt
# target sequence database:        proteomes/Trichoplax_adhaerens.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Gcd10p  [M=300]
Accession:   PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      7e-40  136.4   5.3    4.1e-23   81.3   1.6    2.5  2  tr|B3S6F9|B3S6F9_TRIAD  Uncharacterized protein OS=Trichoplax


Domain annotation for each sequence (and alignments):
>> tr|B3S6F9|B3S6F9_TRIAD  Uncharacterized protein OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_59791 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   1.6   3.6e-27   4.1e-23       2     157 ..       7     145 ..       6     146 .. 0.91
   2 !   59.3   0.1   1.9e-20   2.1e-16     184     289 ..     143     238 ..     142     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 3.6e-27
                  Gcd10p   2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrvvpaaeleaeslaeeeaeeeeee 88 
                             I  ++ v+++   +++k ++++++ +  +++   f+l++++g  y++tf++ +++              +l+ e++++++++   + 
  tr|B3S6F9|B3S6F9_TRIAD   7 IDYGDKVIIE-KGDKFKYITIRKGRKACIDRLN-FYLDNAVGCYYNTTFDVRNDHLY------------KLHYEEISSSTSKP--AV 77 
                             788999****.777*******************.******************99943............56777777776554..34 PP

                  Gcd10p  89 eeardnreiiddgarQkLtkeeIeeLKkegasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlk 157
                              e+ dn  + dd ++QkL++++Ie+ Kk+g+  g ++++kl++++++fd KT+FS+ KY+k+K k +l+
  tr|B3S6F9|B3S6F9_TRIAD  78 IEGIDNSTLADDPSSQKLSRSQIEDYKKSGVI-GMDLVEKLVKNSATFDAKTEFSKVKYIKKKLKNHLR 145
                             469*****************************.********************************9987 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 1.9e-20
                  Gcd10p 184 elreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneqpnls.llkyfnydaaepehplkkhlkt 269
                             +lr +tl++ll++a+v+a+++ ++ ++++GL++aa++eRmg+      eg i+++h+++ p +   + + n+    p+ +++ +++ 
  tr|B3S6F9|B3S6F9_TRIAD 143 HLRYDTLAQLLTMADVKAKSKLVIAESCQGLVTAAVMERMGG------EGVIIQVHAGDVPTVGySITNCNF----PQAYMD-MILY 218
                             79****************************************......************999846899999....776666.7888 PP

                  Gcd10p 270 lswlqllepeedetyeeepe 289
                             ls+ ++ ++e+d+ +  + +
  tr|B3S6F9|B3S6F9_TRIAD 219 LSLRKVNSQESDNMTGLSSK 238
                             88888887777765543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (300 nodes)
Target sequences:                        11518  (5222075 residues searched)
Passed MSV filter:                       875  (0.0759681); expected 230.4 (0.02)
Passed bias filter:                      239  (0.0207501); expected 230.4 (0.02)
Passed Vit filter:                        23  (0.00199687); expected 11.5 (0.001)
Passed Fwd filter:                         1  (8.68206e-05); expected 0.1 (1e-05)
Initial search space (Z):              11518  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.06
# Mc/sec: 26110.38
//
[ok]