# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Gcd10p.hmm.txt
# target sequence database: proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Gcd10p [M=300]
Accession: PF04189.12
Description: Gcd10p family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.7e-49 165.2 0.0 1.1e-48 164.8 0.0 1.1 1 tr|Q38A72|Q38A72_TRYB2 tRNA (adenine(58)-N(1))-methyltransfe
Domain annotation for each sequence (and alignments):
>> tr|Q38A72|Q38A72_TRYB2 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Trypanosoma brucei br
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 164.8 0.0 1.3e-52 1.1e-48 2 288 .. 31 299 .. 30 312 .. 0.81
Alignments for each domain:
== domain 1 score: 164.8 bits; conditional E-value: 1.3e-52
Gcd10p 2 IkpnqhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeksrlrv.vpaaeleaeslaeeeaeeeee 87
I+ +++v+++ + +iv+v+ +++++Lg gs++l+++ g ++g + +++ rv vp+++ ++++ e e+ e
tr|Q38A72|Q38A72_TRYB2 31 ITLGDYVMIT-GGGMKRIVHVQAGGKLRLGSSGSVQLDKLAGVRFGEVVYYDPRS--------RVfVPTNDYPDLDITTLE-EHIE- 106
8999******.66699******************************954433333........330555544444444443.3333. PP
Gcd10p 88 eeeardnreiiddgarQkLtkeeIeeLKke.gasagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyl 173
++rdnr+++d++++Q L++eeI+e+++e g+ + + ++l+e++++f+ KTa+SqeKYl++Kkk+Y +++++++++ ++e++
tr|Q38A72|Q38A72_TRYB2 107 --DGRDNRHLVDENKSQVLSNEEIAEMRREkGV---DVFLNTLVEKSATFHAKTAYSQEKYLRKKKKRYGVLYKIERVTPDGVAETY 188
..49**************************333...699************************************************ PP
Gcd10p 174 lekk.....daq.kilelreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgifessakegtitliheneq.pnlsllkyfn 253
l + +++ ++l+lr++tl+l+l++++vh+g+r++v+D+t+G l aal+ R+g +g i +i++ ++ pn+ ++++
tr|Q38A72|Q38A72_TRYB2 189 LPTInptdvEPEsRVLRLRADTLALILHHSDVHSGSRVIVYDKTNGHLEAALLTRLGS------DGIIFQIMDRTAqPNMFPSQTMG 269
9863345446778*********************************************......********97766********** PP
Gcd10p 254 ydaaepehplkkhlktlswlqllepeedetyeeep 288
+ + + +k + +l+ eed+++ee+
tr|Q38A72|Q38A72_TRYB2 270 IE--NVRELWKAVPRNAAFLR---GEEDTENEEKA 299
95..44566665544444443...44444444333 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (300 nodes)
Target sequences: 8561 (4332363 residues searched)
Passed MSV filter: 388 (0.0453218); expected 171.2 (0.02)
Passed bias filter: 175 (0.0204415); expected 171.2 (0.02)
Passed Vit filter: 15 (0.00175213); expected 8.6 (0.001)
Passed Fwd filter: 1 (0.000116809); expected 0.1 (1e-05)
Initial search space (Z): 8561 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.04
# Mc/sec: 32492.72
//
[ok]