# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    4.2e-39  134.5   0.0    1.2e-38  133.0   0.0    1.7  1  tr|H9G5U3|H9G5U3_ANOCA  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|H9G5U3|H9G5U3_ANOCA  Leucine carboxyl methyltransferase 1 OS=Anolis carolinensis OX=28377 GN=lcmt1 PE=3 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   6.5e-43   1.2e-38       1     188 []      23     214 ..      23     214 .. 0.95

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 6.5e-43
                             HHHHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT CS
                     LCM   1 algvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag 84 
                             a+++++ +a +++r a + g+++Dp++++++++ +                     e+kape++rg+++R+  +  l+ka+l +++ 
  tr|H9G5U3|H9G5U3_ANOCA  23 AVRSTCDDASQCKRyAvNMGYWKDPYIQHFARHPK---------------------ERKAPEISRGYYARVEGVTRLVKAFLqKTDR 88 
                             7899**********669***************993.....................3469**********************99999 PP

                             ESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH.................EECSE..EE--TTS.HHH CS
                     LCM  85 irqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk.................aelry..vpvDlrd.ddw 149
                              +q+++LGAG+Dt++++l++++    k+fE+D+p + ++K++t+k+   + +                 ++ ry  +++Dlr+ +++
  tr|H9G5U3|H9G5U3_ANOCA  89 NCQIINLGAGMDTLFWKLKDEDllPGKYFEIDFPTIATRKIHTIKQTRVLFPtldiipqdtasiyshslDSTRYaiIGADLRElHKL 175
                             **********************9999************************99***************997777777*********** PP

                             HHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHHH CS
                     LCM 150 peaLaaagfdpekptawvaeGvlvYLtpeasdalleaia 188
                             +ea++++g+dpe pt+++ae+vlvY+ pe+sdall+++a
  tr|H9G5U3|H9G5U3_ANOCA 176 EEAMKKCGLDPELPTLLMAECVLVYMAPENSDALLRWVA 214
                             ************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        18528  (9796552 residues searched)
Passed MSV filter:                       503  (0.0271481); expected 370.6 (0.02)
Passed bias filter:                      356  (0.0192142); expected 370.6 (0.02)
Passed Vit filter:                        26  (0.00140328); expected 18.5 (0.001)
Passed Fwd filter:                         1  (5.39724e-05); expected 0.2 (1e-05)
Initial search space (Z):              18528  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.07
# Mc/sec: 26310.74
//
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