# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.5e-25   89.7   0.1    7.2e-13   49.6   0.0    2.7  2  tr|C3Y913|C3Y913_BRAFL  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|C3Y913|C3Y913_BRAFL  Leucine carboxyl methyltransferase 1 OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_68152 PE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   2.5e-17   7.2e-13       1     106 [.      10      96 ..      10     102 .. 0.92
   2 !   37.4   0.0   1.3e-13   3.8e-09     138     187 ..     105     155 ..      94     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 2.5e-17
                             HHHHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT CS
                     LCM   1 algvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag 84 
                             a+++++ +a++++r a ++g+++Dp++++lv++ +++                      ape+nrg+++Rt  + +ll+++l  +++
  tr|C3Y913|C3Y913_BRAFL  10 AVIATNDDAASCKRfAvQQGYWKDPYIQHLVRPGERK----------------------APEINRGYYARTQGVGQLLDQFLqLTNC 74 
                             7899**********66******************554......................8**********************88999 PP

                             ESEEEEET-TT--HHHHHHHTT CS
                     LCM  85 irqvViLGAGlDtrayRlpwla 106
                              +qvV LGAG+ t+ +Rl+ + 
  tr|C3Y913|C3Y913_BRAFL  75 QCQVVSLGAGFETTYWRLKVEG 96 
                             ******************8765 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 1.3e-13
                             SEEE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
                     LCM 138 ryvpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                             +  + Dlr+ +++++ L++ag+d++ pt++v e+vlvYLtp++s++l+++ 
  tr|C3Y913|C3Y913_BRAFL 105 HILSGDLRNtEELNASLTTAGIDKSLPTLFVTECVLVYLTPDQSSKLVRWA 155
                             557789**99**************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        28542  (13248087 residues searched)
Passed MSV filter:                       736  (0.0257866); expected 570.8 (0.02)
Passed bias filter:                      519  (0.0181837); expected 570.8 (0.02)
Passed Vit filter:                        29  (0.00101605); expected 28.5 (0.001)
Passed Fwd filter:                         1  (3.50361e-05); expected 0.3 (1e-05)
Initial search space (Z):              28542  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 31133.00
//
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