# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/LCM.hmm.txt
# target sequence database: proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: LCM [M=188]
Accession: PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.2e-40 137.6 0.0 8.7e-40 136.8 0.0 1.4 1 sp|P46554|LCMT1_CAEEL Leucine carboxyl methyltransferase 1 O
Domain annotation for each sequence (and alignments):
>> sp|P46554|LCMT1_CAEEL Leucine carboxyl methyltransferase 1 OS=Caenorhabditis elegans OX=6239 GN=lcmt-1 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 136.8 0.0 4.4e-44 8.7e-40 2 187 .. 31 226 .. 30 227 .. 0.93
Alignments for each domain:
== domain 1 score: 136.8 bits; conditional E-value: 4.4e-44
HHHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTTES CS
LCM 2 lgvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saagir 86
++ ++ +a ++++ a ++g+++D+++++++++++ ++++++pe++ g+++Rt++++++++++l +++g +
sp|P46554|LCMT1_CAEEL 31 VQRTNDDATQCKYfAtQKGYWKDEFISRFANSSSNV-----------------SEARRFPEISMGYWARTAAIEKYVRDFLnEFDGNA 101
7899*********659*****************442.................35678****************************** PP
EEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH.....................EECSEEE--TTS.HHHH CS
LCM 87 qvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk.....................aelryvpvDlrd.ddwp 150
qvV LG+G+Dt+++Rl + +k++EvD+++v + K++++ + ++++ + +++++Dlr+ +++
sp|P46554|LCMT1_CAEEL 102 QVVSLGCGFDTLFWRLVSSGakLVKYVEVDFSSVTSKKIRHILKPIGPNSvdlkksfesdavvshhadlhaGNYHLIGADLRQaNELD 189
*****************999989******************9988888889***************8887557778************ PP
HHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
LCM 151 eaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
++La+++++++ pt+++ae+vlvY+++++s+all++i
sp|P46554|LCMT1_CAEEL 190 QKLATCQLSHDIPTIFIAECVLVYMSADSSTALLKQI 226
***********************************98 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (188 nodes)
Target sequences: 20008 (8229220 residues searched)
Passed MSV filter: 603 (0.0301379); expected 400.2 (0.02)
Passed bias filter: 432 (0.0215914); expected 400.2 (0.02)
Passed Vit filter: 42 (0.00209916); expected 20.0 (0.001)
Passed Fwd filter: 1 (4.998e-05); expected 0.2 (1e-05)
Initial search space (Z): 20008 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.14
# Mc/sec: 11050.67
//
[ok]