# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    6.5e-25   88.1   0.0    9.8e-25   87.5   0.0    1.2  1  tr|F6X2Y1|F6X2Y1_CIOIN  tRNA wybutosine-synthesizing protein 


Domain annotation for each sequence (and alignments):
>> tr|F6X2Y1|F6X2Y1_CIOIN  tRNA wybutosine-synthesizing protein 4 isoform X2 OS=Ciona intestinalis OX=7719 GN=LOC1001819
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   5.9e-29   9.8e-25      24     187 ..      15     200 ..       5     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 5.9e-29
                             CCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT...ESEEEEET-TT--HHHHHHHTT CS
                     LCM  24 laeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag...irqvViLGAGlDtrayRlpwla 106
                             + +s+vs+ ++++++ + d+ l+++  ++k ++++  +nrg+++R ++++++l+ +l s+     ++qvV LGAG+Dtr +   + a
  tr|F6X2Y1|F6X2Y1_CIOIN  15 NDSSIVSKLSMATCNYIDDQYLKYF--VKKPQRRSALINRGYYLRCKAIEHVLELFLsSN-LecnVKQVVSLGAGFDTRYFWARKYA 98 
                             5566777777776666666666665..6788899***********************543.2479***************9888888 PP

                             .....TEEEEEEE-HHHHHHHHHHHHHSHHHHH..............EECSEEE--TTS..HHHHHHHHHHTT-TTSEEEEEEESSG CS
                     LCM 107 .....glkvfEvDqpevlefKretlkelgaepk..............aelryvpvDlrd..ddwpeaLaaagfdpekptawvaeGvl 172
                                  +l+++E+D+pev+++K+++  e g  ++              ++   ++ Dlr+   ++ +aL + g + ++pt++++e+vl
  tr|F6X2Y1|F6X2Y1_CIOIN  99 qklkkELVYVEIDFPEVMKRKISLGTEFGLYQSdfsneqsqniilrtENYAAIGHDLRNmgPQLHSALSEVGVNFSQPTLFISEVVL 185
                             88999******************99999998889*****9999997555666******988899999999***************** PP

                             GGS-HHHHHHHHHHH CS
                     LCM 173 vYLtpeasdalleai 187
                             +YLt  +s++++++i
  tr|F6X2Y1|F6X2Y1_CIOIN 186 AYLTGSQSSKVISWI 200
                             *************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        16678  (5370518 residues searched)
Passed MSV filter:                       427  (0.0256026); expected 333.6 (0.02)
Passed bias filter:                      307  (0.0184075); expected 333.6 (0.02)
Passed Vit filter:                        25  (0.00149898); expected 16.7 (0.001)
Passed Fwd filter:                         1  (5.99592e-05); expected 0.2 (1e-05)
Initial search space (Z):              16678  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.09
# Mc/sec: 11218.42
//
[ok]