# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.2e-33  115.4   0.0    5.6e-33  114.1   0.0    1.6  1  tr|M9NF32|M9NF32_DROME  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|M9NF32|M9NF32_DROME  Leucine carboxyl methyltransferase 1 OS=Drosophila melanogaster OX=7227 GN=Dmel\CG3793 PE=1 S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   4.1e-37   5.6e-33       1     188 []      22     211 ..      22     211 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 4.1e-37
                             HHHHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT CS
                     LCM   1 algvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag 84 
                             a+++++ +a  ++r a + g+++D+++ ++v+++++                      kape+nrg+++R++ ++  ++++l +++g
  tr|M9NF32|M9NF32_DROME  22 AVIATNDDASDCKRcAvRLGYWKDDYIGYFVRNQER----------------------KAPEINRGYFARVKGVEMCVEKFLkKTSG 86 
                             6889999******9769999************9955......................48*************************** PP

                             ESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSEEE--TTS.HHHH CS
                     LCM  85 irqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelryvpvDlrd.ddwp 150
                              +q+++LG+G+Dt+ +Rl ++a    +++E+D+p v ++K  t+k+ +a+                     + ++++vDlr+ d++ 
  tr|M9NF32|M9NF32_DROME  87 NCQIINLGCGFDTLYFRLRDTAhqVKNFIELDFPTVTARKCYTIKRNKALLArihdedgevrlsptdlhgPSYHLMGVDLRNlDEVD 173
                             **********************9667799**********************9*************9987667888************ PP

                             HHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHHH CS
                     LCM 151 eaLaaagfdpekptawvaeGvlvYLtpeasdalleaia 188
                             ++L++a  d + pt+++ae+vlvY++++++++ll++ia
  tr|M9NF32|M9NF32_DROME 174 SKLQQAEVDYSLPTIFLAECVLVYIEAQNCRNLLKWIA 211
                             ************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        13786  (7394964 residues searched)
Passed MSV filter:                       537  (0.0389526); expected 275.7 (0.02)
Passed bias filter:                      317  (0.0229943); expected 275.7 (0.02)
Passed Vit filter:                        16  (0.0011606); expected 13.8 (0.001)
Passed Fwd filter:                         1  (7.25374e-05); expected 0.1 (1e-05)
Initial search space (Z):              13786  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.05
# Mc/sec: 27805.06
//
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