# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Macaca_mulatta.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.4e-41  142.8   0.0    3.6e-41  141.4   0.0    1.6  1  tr|F6RCY5|F6RCY5_MACMU  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|F6RCY5|F6RCY5_MACMU  Leucine carboxyl methyltransferase 1 OS=Macaca mulatta OX=9544 GN=LCMT1 PE=2 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.0   1.7e-45   3.6e-41       3     187 ..      27     216 ..      25     217 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 1.7e-45
                             HHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTTES CS
                     LCM   3 gvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saagir 86 
                             + ++ +a  ++r a + g+++Dp+++++v+ ++                     e+kape+nrg+++R++ + +l+ka+l ++++++
  tr|F6RCY5|F6RCY5_MACMU  27 RGTCEDASLCKRfAvSIGYWHDPYIQHFVRLSK---------------------ERKAPEINRGYFARVHGVSQLIKAFLrKTECHC 92 
                             678999******669***************993.....................3469***************************** PP

                             EEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSE..EE--TTS.HHHH CS
                     LCM  87 qvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelry..vpvDlrd.ddwp 150
                             q+++LGAG+Dt+++Rl++++   +k+fEvD+p+++++K + +k ++ +++                  ++ ry  +++Dlrd ++++
  tr|F6RCY5|F6RCY5_MACMU  93 QIINLGAGMDTTFWRLKDEDllPSKYFEVDFPMIVTRKLHSIKCKPPLSSpilelhsedtlqmdghilDSKRYavIGADLRDlSELE 179
                             **********************************************99999****************96667667************ PP

                             HHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
                     LCM 151 eaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                             e+L++++++++ pt+++ae+vlvY+tpe+s++ll++ 
  tr|F6RCY5|F6RCY5_MACMU 180 EKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWA 216
                             **********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        21211  (10888574 residues searched)
Passed MSV filter:                       608  (0.0286644); expected 424.2 (0.02)
Passed bias filter:                      458  (0.0215926); expected 424.2 (0.02)
Passed Vit filter:                        25  (0.00117863); expected 21.2 (0.001)
Passed Fwd filter:                         1  (4.71453e-05); expected 0.2 (1e-05)
Initial search space (Z):              21211  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.09
# Mc/sec: 22745.02
//
[ok]