# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      2e-41  142.2   0.0    6.2e-41  140.6   0.0    1.8  1  tr|F7ATD3|F7ATD3_MONDO  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|F7ATD3|F7ATD3_MONDO  Leucine carboxyl methyltransferase 1 OS=Monodelphis domestica OX=13616 GN=LCMT1 PE=3 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   2.9e-45   6.2e-41       3     187 ..      24     213 ..      22     214 .. 0.95

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 2.9e-45
                             HHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTTES CS
                     LCM   3 gvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saagir 86 
                             + ++ +a  ++r a + g+++Dp+++++v+ ++                     e+kape+nrg+++R++ +++llka+l ++++ +
  tr|F7ATD3|F7ATD3_MONDO  24 RGTCDDASLCKRfAvSVGYWHDPYIQHFVRLSK---------------------ERKAPEINRGYFARVHGVNQLLKAFLkKTECNC 89 
                             678999******669***************993.....................3469***********************9***** PP

                             EEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSE..EE--TTS.HHHH CS
                     LCM  87 qvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelry..vpvDlrd.ddwp 150
                             qv++LGAG+Dt++++l++++    k+fE+D+p+++++K  ++k++  ++k                  ++ r+  v++Dlrd ++++
  tr|F7ATD3|F7ATD3_MONDO  90 QVINLGAGMDTTFWKLKDENllPKKYFEIDFPMIVTRKLYNIKAKSSLSKpiqevhseesfqldghvlDSKRFaiVGADLRDlNKME 176
                             **********************************************9999****************996667667************ PP

                             HHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
                     LCM 151 eaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                             e+L++++++++ pt++vae+vlvY+tpe+s++l+++ 
  tr|F7ATD3|F7ATD3_MONDO 177 EKLKKCNMNTQLPTLLVAECVLVYMTPEQSANLIKWA 213
                             **********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        21272  (11266248 residues searched)
Passed MSV filter:                       612  (0.0287702); expected 425.4 (0.02)
Passed bias filter:                      465  (0.0218597); expected 425.4 (0.02)
Passed Vit filter:                        30  (0.0014103); expected 21.3 (0.001)
Passed Fwd filter:                         1  (4.70102e-05); expected 0.2 (1e-05)
Initial search space (Z):              21272  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.08
# Mc/sec: 26475.68
//
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