# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      3e-25   88.3   0.0    8.8e-25   86.8   0.0    1.7  1  tr|A9V7T0|A9V7T0_MONBE  Predicted protein OS=Monosiga brevico
      7e-25   87.1   0.0    1.5e-24   86.0   0.0    1.5  1  tr|A9UPK8|A9UPK8_MONBE  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|A9V7T0|A9V7T0_MONBE  Predicted protein OS=Monosiga brevicollis OX=81824 GN=10965 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   1.9e-28   8.8e-25      50     186 ..      59     271 ..      20     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 1.9e-28
                             CHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT.ESEEEEET-TT--HHHHHHHTT....TEEEEEEE-HHHHHHHHHHHHHSH CS
                     LCM  50 eeekkekkapelnrgiavRtrffddllkaal.saag.irqvViLGAGlDtrayRlpwla....glkvfEvDqpevlefKretlkelg 130
                              +++  +++p +nrg+++R++++d+++ a+l ++a  + q+  LGAG+D++++Rl+       g+++fEvD+p ++++K+++++++ 
  tr|A9V7T0|A9V7T0_MONBE  59 MVQRVTRRSPIINRGYYIRAKAVDHIMSAFLqQHADaAPQILSLGAGFDATFFRLKAAGllppGSVYFEVDFPTLIQRKTALIHQSS 145
                             245667889**********************65444799******************99999***********************99 PP

                             HHHH.....................................................................EECSEEE--TTS.H CS
                     LCM 131 aepk.....................................................................aelryvpvDlrd.d 147
                              ++                                                                      ++ r v+vDl + +
  tr|A9V7T0|A9V7T0_MONBE 146 RLSAhlpeapitssdalsdlntpaaqealtqlreqhldraakkaaannaaqasdadsasepdlatllghallyEDYRAVGVDLCKvK 232
                             99999******************************************************************9999************ PP

                             HHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHH CS
                     LCM 148 dwpeaLaaagfdpekptawvaeGvlvYLtpeasdallea 186
                             +++ +L+aag+ p++pt++++e+vl Y  p+ + a++++
  tr|A9V7T0|A9V7T0_MONBE 233 QLRLRLQAAGLLPDRPTLVLSECVLTYVGPKPAFAVVKW 271
                             ****************************99988888776 PP

>> tr|A9UPK8|A9UPK8_MONBE  Leucine carboxyl methyltransferase 1 OS=Monosiga brevicollis OX=81824 GN=22106 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   3.4e-28   1.5e-24      53     187 ..      86     219 ..      61     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 3.4e-28
                             CCCT--HHHHHHHHHHHHHHHHHHHHHHHCTT.ESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHHEE CS
                     LCM  53 kkekkapelnrgiavRtrffddllkaalsaag.irqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepkae 136
                             k++  +p ++rg++vR+ +++  ++++++++g  +q+  LGAG+Dt+++Rl   +    +++EvD+p+v+e Kr++       +ka 
  tr|A9UPK8|A9UPK8_MONBE  86 KTHPCSPLIHRGYFVRVQAVERTVRSFIAQHGaQAQILSLGAGFDTLFFRLMNDNvtLRRYVEVDFPAVVEKKRQICS-----SKAP 167
                             34556899********************5577688*****************99997789**************9985.....6677 PP

                             CSEEE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
                     LCM 137 lryvpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                             lr v  Dl + +++++ L +  +dp  p ++++e+vlvY+ pea+++l++++
  tr|A9UPK8|A9UPK8_MONBE 168 LRSVLSDLASpSEVASLLDRGRLDPGLPLLVISECVLVYMAPEAVANLIQWT 219
                             899*******99*************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                         9188  (5511963 residues searched)
Passed MSV filter:                       448  (0.0487593); expected 183.8 (0.02)
Passed bias filter:                      209  (0.0227471); expected 183.8 (0.02)
Passed Vit filter:                        17  (0.00185024); expected 9.2 (0.001)
Passed Fwd filter:                         2  (0.000217675); expected 0.1 (1e-05)
Initial search space (Z):               9188  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.05
# Mc/sec: 20724.98
//
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