# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/LCM.hmm.txt
# target sequence database: proteomes/Nematostella_vectensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: LCM [M=188]
Accession: PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-33 115.8 0.0 9e-33 114.2 0.0 1.7 1 tr|A7SU99|A7SU99_NEMVE Leucine carboxyl methyltransferase 1
2.7e-23 83.3 0.0 4.1e-23 82.7 0.0 1.2 1 tr|A7S1F7|A7S1F7_NEMVE Predicted protein (Fragment) OS=Nemat
Domain annotation for each sequence (and alignments):
>> tr|A7SU99|A7SU99_NEMVE Leucine carboxyl methyltransferase 1 OS=Nematostella vectensis OX=45351 GN=v1g131993 PE=3 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 114.2 0.0 7.4e-37 9e-33 1 187 [. 8 195 .. 8 196 .. 0.95
Alignments for each domain:
== domain 1 score: 114.2 bits; conditional E-value: 7.4e-37
HHHHHHHHHHHHHHH..HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT CS
LCM 1 algvaaaralesrra..adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag 84
a+++++ +a +++r+ ++g+++D++++++v++a++ ++pe+nrg+++R++ + +l+++++ ++
tr|A7SU99|A7SU99_NEMVE 8 AVIATNDDASSCKRSavQKGYWEDNFIQYFVKQAER----------------------RTPEINRGYYARVKGMHTLVEQFVeLTDR 72
7899**********66******************55......................48**********************87888 PP
ESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH.................EECSEEE--TTS.HHHHH CS
LCM 85 irqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk.................aelryvpvDlrd.ddwpe 151
+q++ LGAG+Dt++++l++ +++EvD+++v ++K + +k + +++ ++ +++++Dlrd + + +
tr|A7SU99|A7SU99_NEMVE 73 SCQIISLGAGFDTLFWQLKHKGkdPAVFVEVDFSSVTSRKCHSIKMRKQLKEvftaednltidpnevhsKSYHLIAADLRDlSALDT 159
99******************999999*******************9998888************9987777778************* PP
HHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
LCM 152 aLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
+ ++ g+d++ pt++++e+v vY++pe+s+al++++
tr|A7SU99|A7SU99_NEMVE 160 KFTEIGLDRDLPTLFLVECVFVYMKPEHSAALIDWT 195
*********************************996 PP
>> tr|A7S1F7|A7S1F7_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g100718 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 82.7 0.0 3.4e-27 4.1e-23 50 186 .. 29 186 .. 5 188 .. 0.88
Alignments for each domain:
== domain 1 score: 82.7 bits; conditional E-value: 3.4e-27
CHCCCCT--HHHHHHHHHHHHHHHHHHHHHH..HCTT...ESEEEEET-TT--HHHHHHHTT...TEEEEEEE-HHHHHHHHHHHHH CS
LCM 50 eeekkekkapelnrgiavRtrffddllkaal..saag...irqvViLGAGlDtrayRlpwla...glkvfEvDqpevlefKretlke 128
+++k++k++p +nrg+++R +++ ++l +l s+++ q+ LGAG+Dt ++R +++ ++++fEvD+pev++ K++ +k+
tr|A7S1F7|A7S1F7_NEMVE 29 FVTKDAKRSPLINRGYYIRIKAVSQVLSLFLesSFKCyshYLQILSLGAGFDTSFFRFASEGrltNTRFFEVDFPEVVKHKIKFIKQ 115
47788999***********************64444588867******************99999*********************9 PP
SHHHHH............EECSEEE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHH CS
LCM 129 lgaepk............aelryvpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdallea 186
+ + ++ + ++Dl++ + ++++L +g+d++ pt++++e+vl YL+p +s+a++ +
tr|A7S1F7|A7S1F7_NEMVE 116 NNLFNIphenelpsgfhsEDYSLLGCDLKNlQGLEQKLLGCGIDTSCPTLLLSEVVLSYLDPISSSAVICW 186
98766679999999997666667*****************************************9999876 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (188 nodes)
Target sequences: 24428 (8257945 residues searched)
Passed MSV filter: 617 (0.0252579); expected 488.6 (0.02)
Passed bias filter: 450 (0.0184215); expected 488.6 (0.02)
Passed Vit filter: 24 (0.000982479); expected 24.4 (0.001)
Passed Fwd filter: 2 (8.18733e-05); expected 0.2 (1e-05)
Initial search space (Z): 24428 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.07
# Mc/sec: 22178.48
//
[ok]