# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Ornithorhynchus_anatinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    6.3e-36  124.3   0.0    1.8e-35  122.9   0.0    1.7  1  tr|F7F200|F7F200_ORNAN  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|F7F200|F7F200_ORNAN  Leucine carboxyl methyltransferase 1 OS=Ornithorhynchus anatinus OX=9258 GN=LCMT1 PE=3 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   8.2e-40   1.8e-35      15     187 ..      24     200 ..      15     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 8.2e-40
                             H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTTESEEEEET-TT--HH CS
                     LCM  15 a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saagirqvViLGAGlDtra 99 
                             a + g+++Dp+++++v+ +                     ke+kape+nrg+++R++ + +l+ka+l +++g +q+ +LGAG+Dt++
  tr|F7F200|F7F200_ORNAN  24 AvSIGYWHDPYIQHFVRLT---------------------KERKAPEINRGYFARVHGVFQLIKAFLkKTEGNCQIMNLGAGMDTTF 89 
                             4677899999999999999.....................34579****************************************** PP

                             HHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSE..EE--TTS.HHHHHHHHHHTT-TTSE CS
                     LCM 100 yRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelry..vpvDlrd.ddwpeaLaaagfdpekp 163
                             ++l++++   +k+fEvD+p+++++K + +k+++ +++                  ++ r+  v++Dlrd   ++e+L++ +++++ p
  tr|F7F200|F7F200_ORNAN  90 WKLKEENllPVKYFEVDFPMIVTRKLNSIKAKPLLSNpimelhsaesllidghilDSSRFaiVGADLRDlVGLEEKLKKYNMNTQLP 176
                             ************************************9*****************97777667*******99**************** PP

                             EEEEEESSGGGS-HHHHHHHHHHH CS
                     LCM 164 tawvaeGvlvYLtpeasdalleai 187
                             t+++ae+vlvY+t+++s++l+++ 
  tr|F7F200|F7F200_ORNAN 177 TLLIAECVLVYMTADQSANLIKWA 200
                             *********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        21677  (8259262 residues searched)
Passed MSV filter:                       550  (0.0253725); expected 433.5 (0.02)
Passed bias filter:                      423  (0.0195138); expected 433.5 (0.02)
Passed Vit filter:                        26  (0.00119943); expected 21.7 (0.001)
Passed Fwd filter:                         1  (4.61318e-05); expected 0.2 (1e-05)
Initial search space (Z):              21677  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.05
# Mc/sec: 31054.83
//
[ok]