# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                       -----------
    3.8e-42  144.7   0.0    9.8e-42  143.4   0.0    1.6  1  tr|A0A2I3T334|A0A2I3T334_PANTR  Leucine carboxyl methyltransfera


Domain annotation for each sequence (and alignments):
>> tr|A0A2I3T334|A0A2I3T334_PANTR  Leucine carboxyl methyltransferase 1 OS=Pan troglodytes OX=9598 GN=LCMT1 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   4.3e-46   9.8e-42       3     187 ..      33     222 ..      31     223 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 4.3e-46
                                     HHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHH CS
                             LCM   3 gvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaa 79 
                                     + ++ +a  ++r a + g+++Dp+++++v+ ++                     e+kape+nrg+++R++ + +l+ka+
  tr|A0A2I3T334|A0A2I3T334_PANTR  33 RGTCEDASLCKRfAvSIGYWHDPYIQHFVRLSK---------------------ERKAPEINRGYFARVHGVSQLIKAF 90 
                                     678999******669***************993.....................3469********************* PP

                                     H.HCTTESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EEC CS
                             LCM  80 l.saagirqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................ael 137
                                     l ++++++q+V+LGAG+Dt+++Rl++++   +k+fEvD+p+++++K + +k ++ +++                  ++ 
  tr|A0A2I3T334|A0A2I3T334_PANTR  91 LrKTECHCQIVNLGAGMDTTFWRLKDEDllPSKYFEVDFPMIVTRKLHSIKCKPPLSSpilelhsedtlqmdghilDSK 169
                                     ******************************************************99999****************9666 PP

                                     SE..EE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
                             LCM 138 ry..vpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                                     ry  +++Dlrd ++++e+L++++++++ pt+++ae+vlvY+tpe+s++ll++ 
  tr|A0A2I3T334|A0A2I3T334_PANTR 170 RYavIGADLRDlSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWA 222
                                     7667**********************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        23008  (11942255 residues searched)
Passed MSV filter:                       674  (0.0292942); expected 460.2 (0.02)
Passed bias filter:                      513  (0.0222966); expected 460.2 (0.02)
Passed Vit filter:                        36  (0.00156467); expected 23.0 (0.001)
Passed Fwd filter:                         1  (4.34631e-05); expected 0.2 (1e-05)
Initial search space (Z):              23008  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.08
# Mc/sec: 28064.30
//
[ok]