# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/LCM.hmm.txt
# target sequence database: proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: LCM [M=188]
Accession: PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-42 144.7 0.0 9.8e-42 143.4 0.0 1.6 1 tr|A0A2I3T334|A0A2I3T334_PANTR Leucine carboxyl methyltransfera
Domain annotation for each sequence (and alignments):
>> tr|A0A2I3T334|A0A2I3T334_PANTR Leucine carboxyl methyltransferase 1 OS=Pan troglodytes OX=9598 GN=LCMT1 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 143.4 0.0 4.3e-46 9.8e-42 3 187 .. 33 222 .. 31 223 .. 0.95
Alignments for each domain:
== domain 1 score: 143.4 bits; conditional E-value: 4.3e-46
HHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHH CS
LCM 3 gvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaa 79
+ ++ +a ++r a + g+++Dp+++++v+ ++ e+kape+nrg+++R++ + +l+ka+
tr|A0A2I3T334|A0A2I3T334_PANTR 33 RGTCEDASLCKRfAvSIGYWHDPYIQHFVRLSK---------------------ERKAPEINRGYFARVHGVSQLIKAF 90
678999******669***************993.....................3469********************* PP
H.HCTTESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EEC CS
LCM 80 l.saagirqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................ael 137
l ++++++q+V+LGAG+Dt+++Rl++++ +k+fEvD+p+++++K + +k ++ +++ ++
tr|A0A2I3T334|A0A2I3T334_PANTR 91 LrKTECHCQIVNLGAGMDTTFWRLKDEDllPSKYFEVDFPMIVTRKLHSIKCKPPLSSpilelhsedtlqmdghilDSK 169
******************************************************99999****************9666 PP
SE..EE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
LCM 138 ry..vpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
ry +++Dlrd ++++e+L++++++++ pt+++ae+vlvY+tpe+s++ll++
tr|A0A2I3T334|A0A2I3T334_PANTR 170 RYavIGADLRDlSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWA 222
7667**********************************************996 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (188 nodes)
Target sequences: 23008 (11942255 residues searched)
Passed MSV filter: 674 (0.0292942); expected 460.2 (0.02)
Passed bias filter: 513 (0.0222966); expected 460.2 (0.02)
Passed Vit filter: 36 (0.00156467); expected 23.0 (0.001)
Passed Fwd filter: 1 (4.34631e-05); expected 0.2 (1e-05)
Initial search space (Z): 23008 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.08
# Mc/sec: 28064.30
//
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