# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.7e-17   63.6   0.0    2.5e-17   63.1   0.0    1.3  1  tr|S4RS29|S4RS29_PETMA  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|S4RS29|S4RS29_PETMA  Leucine carboxyl methyltransferase 1 OS=Petromyzon marinus OX=7757 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.8e-21   2.5e-17     102     187 ..       8     116 ..       1     117 [. 0.89

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.8e-21
                             HHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSE..EE--TTS.HHHHHHHHHHTT-TTSEEE CS
                     LCM 102 lpwla..glkvfEvDqpevlefKretlkelgaepk..................aelry..vpvDlrd.ddwpeaLaaagfdpekpta 165
                             l++ +    k+fE+D+p++ ++K++++k++  ++k                  ++ r+   +vDlrd  +++++L++ g+dp+ pt+
  tr|S4RS29|S4RS29_PETMA   8 LKDANllPRKYFELDFPAITSRKIHIIKTKAPLSKavlethssdslaldganlNSDRFaiLGVDLRDlATVQQKLRDTGLDPQLPTV 94 
                             5555555779**********************999***************9994555455*************************** PP

                             EEEESSGGGS-HHHHHHHHHHH CS
                     LCM 166 wvaeGvlvYLtpeasdalleai 187
                             +vae+vlvY+t e+s++l+++ 
  tr|S4RS29|S4RS29_PETMA  95 LVAECVLVYMTLEHSSRLVRWA 116
                             *******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        13539  (5048892 residues searched)
Passed MSV filter:                       319  (0.0235616); expected 270.8 (0.02)
Passed bias filter:                      219  (0.0161755); expected 270.8 (0.02)
Passed Vit filter:                        15  (0.00110791); expected 13.5 (0.001)
Passed Fwd filter:                         1  (7.38607e-05); expected 0.1 (1e-05)
Initial search space (Z):              13539  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.05
# Mc/sec: 18983.83
//
[ok]