# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/LCM.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: LCM [M=188]
Accession: PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-20 72.1 0.0 2.6e-19 68.2 0.0 2.3 1 tr|Q9I2N5|Q9I2N5_PSEAE Uncharacterized protein OS=Pseudomona
1.6e-16 59.1 0.0 2.6e-16 58.5 0.0 1.3 1 tr|Q9HX18|Q9HX18_PSEAE Uncharacterized protein OS=Pseudomona
Domain annotation for each sequence (and alignments):
>> tr|Q9I2N5|Q9I2N5_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 68.2 0.0 9.4e-23 2.6e-19 5 187 .. 19 175 .. 16 176 .. 0.84
Alignments for each domain:
== domain 1 score: 68.2 bits; conditional E-value: 9.4e-23
HHHHHHHHHHHHHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTTESEEEE CS
LCM 5 aaaralesrraadglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saagirqvVi 90
a+al sr + d +++D +ae v++ +++ + + + ++ r +a+R ++fd++ +++l + + qv +
tr|Q9I2N5|Q9I2N5_PSEAE 19 LYAKALDSRLD-DSILHDRFAEEAVRQIDFDF-S---------------RVALGKGNERALAMRSHYFDQACREFLgR-HPEGQVLN 87
56889999999.99********9999998875.2...............23346778899****************54.6678**** PP
ET-TT--HHHHHHHTTTEEEEEEE-HHHHHHHHHHHHHSHHHHHEECSEEE--TTSHHHHHHHHHHTT-TTSEEEEEEESSGGGS-H CS
LCM 91 LGAGlDtrayRlpwlaglkvfEvDqpevlefKretlkelgaepkaelryvpvDlrdddwpeaLaaagfdpekptawvaeGvlvYLtp 177
LG+GlD+r yR + +a+l +f++D+pev+++++++ + +a ++ v dd w +g +e+p++++aeG+++YL++
tr|Q9I2N5|Q9I2N5_PSEAE 88 LGCGLDSRIYRVDPPAELPWFDLDYPEVMDLRERLYPPRAGAYRALRHSVD----DDGWL-----QGVPRERPALVLAEGLMPYLRE 165
*********************************999777776666666443....45565.....477888**************** PP
HHHHHHHHHH CS
LCM 178 easdalleai 187
++++l+e++
tr|Q9I2N5|Q9I2N5_PSEAE 166 SQVRRLVERL 175
******9875 PP
>> tr|Q9HX18|Q9HX18_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 58.5 0.0 9.2e-20 2.6e-16 61 179 .. 60 180 .. 55 189 .. 0.92
Alignments for each domain:
== domain 1 score: 58.5 bits; conditional E-value: 9.2e-20
HHHHHHHHHHHHHHHHHHHHHCTTESEEEEET-TT--HHHHHHHTT.TEEEEEEE-HHHHHHHHHHHHHSHHHHHEECSEEE--TTS CS
LCM 61 lnrgiavRtrffddllkaalsaagirqvViLGAGlDtrayRlpwla.glkvfEvDqpevlefKretlkelgaepkaelryvpvDlrd 146
+ ++++ R ++d++l++a++++g+ qvV +++Gl +r R + +l++ E D p + ++K+++l+e+g + +++ + +vD+
tr|Q9HX18|Q9HX18_PSEAE 60 IEDFLLQRHLMIDARLTQAVEREGVVQVVEMACGLSPRGRRFRQRYpQLRYLEADLPPMAARKAALLREQGWLGPEH-AVAAVDILA 145
6788999*************98********************99999*************************99965.5699***** PP
HHHHHHHHHH..TT-TTSEEEEEEESSGGGS-HHH CS
LCM 147 ddwpeaLaaa..gfdpekptawvaeGvlvYLtpea 179
+d ++ Laa g+d+e+p +++ eG++ Y ++
tr|Q9HX18|Q9HX18_PSEAE 146 EDGERSLAALfaGLDRERPLVVITEGLVNYFQRPV 180
*******99677******************98765 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (188 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 217 (0.0390077); expected 111.3 (0.02)
Passed bias filter: 153 (0.0275031); expected 111.3 (0.02)
Passed Vit filter: 12 (0.00215711); expected 5.6 (0.001)
Passed Fwd filter: 2 (0.000359518); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.02
# Mc/sec: 17457.42
//
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