# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/LCM.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: LCM [M=188]
Accession: PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-31 110.3 0.0 6.6e-31 108.4 0.0 1.8 1 tr|W4Y578|W4Y578_STRPU Leucine carboxyl methyltransferase 1
8e-30 104.8 0.0 1.2e-29 104.3 0.0 1.2 1 tr|W4YET6|W4YET6_STRPU Uncharacterized protein OS=Strongyloc
2.1e-29 103.5 0.0 3.2e-29 102.9 0.0 1.2 1 tr|W4XPM5|W4XPM5_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4Y578|W4Y578_STRPU Leucine carboxyl methyltransferase 1 OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 108.4 0.0 7e-35 6.6e-31 1 187 [. 5 196 .. 5 197 .. 0.92
Alignments for each domain:
== domain 1 score: 108.4 bits; conditional E-value: 7e-35
HHHHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT CS
LCM 1 algvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal.saag 84
a+++++ +a ++r a ++g+++Dp+++ lv++ ++ +ape+nrg+++Rt + +ll+++l +++
tr|W4Y578|W4Y578_STRPU 5 AVQSTNDDASMCKRfAvQQGYWKDPYIQLLVKSGQR----------------------RAPEINRGYYARTQGMHTLLAQFLqLNKK 69
7999**********66***************99944......................58**********************76788 PP
ESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSE..EE--TTS.HH CS
LCM 85 irqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelry..vpvDlrd.dd 148
++qv++LGAG+D++++Rl++++ ++EvD+ +v ++K ++++ + +++ ++ +y Dlr+ ++
tr|W4Y578|W4Y578_STRPU 70 ACQVINLGAGFDSLFWRLKDEDllPDLYIEVDFRAVTSRKCQNVRIRPKLTQgvqetcegqsvviedaelHSPKYhiLWGDLRNvEE 156
**********************98556*****************99999999***************8884455455999******* PP
HHHHHHHH.TT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
LCM 149 wpeaLaaa.gfdpekptawvaeGvlvYLtpeasdalleai 187
++++L + g+d +kpt+++ae+vlvYL++++sd ll++i
tr|W4Y578|W4Y578_STRPU 157 LEKKLSKVaGIDFSKPTFFMAECVLVYLHHDKSDPLLRWI 196
*****9877*****************************98 PP
>> tr|W4YET6|W4YET6_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 104.3 0.0 1.2e-33 1.2e-29 18 187 .. 16 211 .. 6 212 .. 0.89
Alignments for each domain:
== domain 1 score: 104.3 bits; conditional E-value: 1.2e-33
TSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHHHCTT..ESEEEEET-TT--HHHHH CS
LCM 18 glidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaalsaag..irqvViLGAGlDtrayRl 102
++++++ +s+vs+ ++++ ++++ ++++ k+++++p +nrg++vR+r++dd+lka+l++ g +q++ LGAG+D++ +Rl
tr|W4YET6|W4YET6_STRPU 16 IAVQGTNDSSIVSKCSVAM--MGYFQDAYLRHFVSKTSRRSPLINRGYFVRARAIDDILKAFLKKFGdsKNQIISLGAGFDSTYFRL 100
5567777778888887775..55555555656788999*************************65666899**************** PP
HHTT...TEEEEEEE-HHHHHHHHHHHHHSHHHHH......................EECSEEE--TTS.HHHHHHHHHHTT-TTSE CS
LCM 103 pwla...glkvfEvDqpevlefKretlkelgaepk......................aelryvpvDlrd.ddwpeaLaaagfdpekp 163
+ ++ ++EvD+p+++++K+++++++ +++ ++ ++v+vDl++ d +++ ++ g d +p
tr|W4YET6|W4YET6_STRPU 101 QASGsldHTAFYEVDFPQLVKRKAALIRKKTELSDlllnpvyhdeahedsfgvcissEKYHLVGVDLKQlDALQSVFKDIGVDLVVP 187
*999999**************************99******************998778888*******999999************ PP
EEEEEESSGGGS-HHHHHHHHHHH CS
LCM 164 tawvaeGvlvYLtpeasdalleai 187
t++++e+v+ Y++ ++sdal+++
tr|W4YET6|W4YET6_STRPU 188 TLLLSECVITYIDTDSSDALINWA 211
*********************996 PP
>> tr|W4XPM5|W4XPM5_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.9 0.0 3.3e-33 3.2e-29 19 187 .. 17 211 .. 6 212 .. 0.89
Alignments for each domain:
== domain 1 score: 102.9 bits; conditional E-value: 3.3e-33
SSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHHHCTT..ESEEEEET-TT--HHHHHH CS
LCM 19 lidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaalsaag..irqvViLGAGlDtrayRlp 103
++++++ +s+vs+ ++++ ++++ ++++ k+++++p +nrg++vR+r++dd+lka+l++ g +q++ LGAG+D++ +Rl+
tr|W4XPM5|W4XPM5_STRPU 17 AVQGTNDSSIVSKCSVAM--MGYFQDAYLRHFVSKTSRRSPLINRGYFVRARAIDDVLKAFLKKFGdsKNQIISLGAGFDSTYFRLQ 101
567777778888887775..55555555656788999*************************65666899***************** PP
HTT...TEEEEEEE-HHHHHHHHHHHHHSHHHHH......................EECSEEE--TTS.HHHHHHHHHHTT-TTSEE CS
LCM 104 wla...glkvfEvDqpevlefKretlkelgaepk......................aelryvpvDlrd.ddwpeaLaaagfdpekpt 164
++ ++EvD+p+++++K+++++++ +++ ++ ++v+vDl++ d +++ ++ g d +pt
tr|W4XPM5|W4XPM5_STRPU 102 ASGsleNTAFYEVDFPQLVKRKAALIRNKTELSDlllnpvyhddshqdsfgvcissEKYHLVGVDLKQlDALQSVFKDIGVDLVVPT 188
999999**************************99******************998778888*******999999************* PP
EEEEESSGGGS-HHHHHHHHHHH CS
LCM 165 awvaeGvlvYLtpeasdalleai 187
++++e+v+ Y++ ++sdal+++
tr|W4XPM5|W4XPM5_STRPU 189 LLLSECVITYIDTDSSDALINWA 211
********************996 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (188 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 862 (0.0301462); expected 571.9 (0.02)
Passed bias filter: 592 (0.0207036); expected 571.9 (0.02)
Passed Vit filter: 39 (0.00136392); expected 28.6 (0.001)
Passed Fwd filter: 3 (0.000104917); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.13
# Mc/sec: 20630.89
//
[ok]