# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/LCM.hmm.txt
# target sequence database:        proteomes/Tetrahymena_thermophila.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       LCM  [M=188]
Accession:   PF04072.14
Description: Leucine carboxyl methyltransferase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.7e-23   83.5   0.0    1.8e-22   80.8   0.0    2.1  1  tr|W7WZC8|W7WZC8_TETTS  Leucine carboxyl methyltransferase 1 


Domain annotation for each sequence (and alignments):
>> tr|W7WZC8|W7WZC8_TETTS  Leucine carboxyl methyltransferase 1 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=T
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   6.8e-27   1.8e-22       4     188 .]       9     197 ..       6     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 6.8e-27
                             HHHHHHHHHHHH..HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHHHHHHHHHHHHHHHHHH..HCTTES CS
                     LCM   4 vaaaralesrra..adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrgiavRtrffddllkaal..saagir 86 
                              ++a a++s+ +  ++g+++D++ae +v+ +g++                         ++rg++ R+  f  l++++l  s++  +
  tr|W7WZC8|W7WZC8_TETTS   9 DTNAEAMASKLSavHKGYFQDNFAEEFVHTQGRK----------------------DIIIHRGYWSRVNIFTLLIERFLlnSKNEKK 73 
                             4666777777744777777777777777777554......................6799******************98555669* PP

                             EEEEET-TT--HHHHHHHTT.....TEEEEEEE-HHHHHHHHHHHHHSHHHHH................EECSEEE--TTS.HHHHH CS
                     LCM  87 qvViLGAGlDtrayRlpwla.....glkvfEvDqpevlefKretlkelgaepk................aelryvpvDlrd.ddwpe 151
                             q++ LG+G+Dt  y l + +     + +++E+D  +v++ K++++++++  ++                ++  + p D+++ d+++e
  tr|W7WZC8|W7WZC8_TETTS  74 QIISLGCGYDTHYYILRESKqfkdlDFHYVEIDLINVVKNKIKRIQNSNKIKQvigeftlddaksslhaKNYSLYPSDITKiDEFKE 160
                             *****************99999*999*******************99998877**********99986556667************* PP

                             HHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHHH CS
                     LCM 152 aLaaagfdpekptawvaeGvlvYLtpeasdalleaia 188
                             +L ++g+d ++pt++ ae+v+ Y++ + sd+ll+ ia
  tr|W7WZC8|W7WZC8_TETTS 161 NLVKCGIDFSVPTFIFAECVMTYIESKFSDELLKSIA 197
                             *********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (188 nodes)
Target sequences:                        26971  (16912921 residues searched)
Passed MSV filter:                      1492  (0.0553187); expected 539.4 (0.02)
Passed bias filter:                      853  (0.0316266); expected 539.4 (0.02)
Passed Vit filter:                        52  (0.001928); expected 27.0 (0.001)
Passed Fwd filter:                         1  (3.70769e-05); expected 0.3 (1e-05)
Initial search space (Z):              26971  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.01s 00:00:00.32 Elapsed: 00:00:00.13
# Mc/sec: 24458.69
//
[ok]