# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/LCM.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LCM [M=188] Accession: PF04072.14 Description: Leucine carboxyl methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-39 135.7 0.0 5e-39 134.6 0.0 1.5 1 tr|F6WLS5|F6WLS5_XENTR Leucine carboxyl methyltransfera 2.9e-17 63.7 0.0 3.5e-17 63.4 0.0 1.1 1 tr|A0A1B8Y0D0|A0A1B8Y0D0_XENTR Uncharacterized protein (Fragmen 0.00023 21.6 0.0 0.00033 21.1 0.0 1.2 1 tr|F7C674|F7C674_XENTR Leucine carboxyl methyltransfera Domain annotation for each sequence (and alignments): >> tr|F6WLS5|F6WLS5_XENTR Leucine carboxyl methyltransferase 1 OS=Xenopus tropicalis OX=8364 GN=lcmt1 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 134.6 0.0 6.2e-43 5e-39 1 187 [. 17 209 .. 17 210 .. 0.95 Alignments for each domain: == domain 1 score: 134.6 bits; conditional E-value: 6.2e-43 HHHHHHHHHHHHHH.H.HHTSSHTCCCCCCCHHHHHHHHCHCCCHCHHCHGCHCCCCT--HHHHHH.HHHHHHHHHHHHHHHH.HCT CS LCM 1 algvaaaralesrr.a.adglidDplaeslvsaaglellerkadkelekekeeekkekkapelnrg.iavRtrffddllkaal.saa 83 a++ ++ +a ++r a + g+++Dp+++++v++a+ e+kape+nrg +++R+ + llka+l +++ tr|F6WLS5|F6WLS5_XENTR 17 AVRGTCDDASICKRfAvSAGYWKDPYIQYFVRQAK---------------------ERKAPEINRGeYYARVQGVHLLLKAFLrKTE 82 78899*********669*****************3.....................34699***999******************** PP TESEEEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSE..EE--TTS.H CS LCM 84 girqvViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelry..vpvDlrd.d 147 + +q+++LGAGlDt+++Rl++++ k+fEvD+p+++++K ++k ++ ++k ++ ry +++Dlr+ + tr|F6WLS5|F6WLS5_XENTR 83 CNCQIINLGAGLDTTFWRLKDENllPKKYFEVDFPAIVARKLYNIKSKPPLSKpimethsgesllldahslDSARYsiIGADLRNpK 169 ***************************************************99****************996777667********* PP HHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS LCM 148 dwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187 d++e+L++ +dp+ pt++v e+vlvY+tpe+s++ll++ tr|F6WLS5|F6WLS5_XENTR 170 DMEEKLKKMSLDPQLPTLLVTECVLVYMTPEQSASLLQWA 209 *************************************986 PP >> tr|A0A1B8Y0D0|A0A1B8Y0D0_XENTR Uncharacterized protein (Fragment) OS=Xenopus tropicalis OX=8364 GN=XENTR_v900284115m # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.4 0.0 4.3e-21 3.5e-17 88 187 .. 1 121 [. 1 122 [. 0.95 Alignments for each domain: == domain 1 score: 63.4 bits; conditional E-value: 4.3e-21 EEEET-TT--HHHHHHHTT..TEEEEEEE-HHHHHHHHHHHHHSHHHHH..................EECSEEE--TTS CS LCM 88 vViLGAGlDtrayRlpwla..glkvfEvDqpevlefKretlkelgaepk..................aelryvpvDlrd 146 vV LG+G+D++++Rl + l v EvD+p+v+++K +++++g ++ + ++ +vDl++ tr|A0A1B8Y0D0|A0A1B8Y0D0_XENTR 1 VVSLGCGFDSLFFRLRMQSesPLCVWEVDFPSVVKRKCLLIEQSGDLRDllgsyvtpddngplvllsQGYKLLGVDLTE 79 8*************999888899*************************9**************998767778******* PP .HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS LCM 147 .ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187 +++ +aL ag++ + pt+++ e+ l+Y++p +s+al+ + tr|A0A1B8Y0D0|A0A1B8Y0D0_XENTR 80 vSSLDAALNLAGLSWDCPTLVLGEVALCYMDPARSTALIGWA 121 **************************************9885 PP >> tr|F7C674|F7C674_XENTR Leucine carboxyl methyltransferase 1 OS=Xenopus tropicalis OX=8364 GN=lcmt2 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 4.1e-08 0.00033 139 187 .. 7 56 .. 2 57 .. 0.93 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 4.1e-08 EEE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS LCM 139 yvpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187 + +vDl++ +++ +aL ag++ + pt+++ e+ l+Y++p +s+al+ + tr|F7C674|F7C674_XENTR 7 LLGVDLTEvSSLDAALNLAGLSWDCPTLVLGEVALCYMDPARSTALIGWA 56 578*******************************************9885 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (188 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 569 (0.0235299); expected 483.6 (0.02) Passed bias filter: 409 (0.0169134); expected 483.6 (0.02) Passed Vit filter: 42 (0.00173683); expected 24.2 (0.001) Passed Fwd filter: 3 (0.000124059); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.18u 0.01s 00:00:00.19 Elapsed: 00:00:00.08 # Mc/sec: 27687.90 // [ok]